Glyma.04g252900

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Report for Sequence Feature Glyma.04g252900

Feature Type:	gene_model
Chromosome:	Gm04
Start:	51946270
stop:	51951849
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.04g252900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G25710.1	AT	holocarboxylase synthase 1	JGI	N/A	IEA
GO:0006464	GO-bp	cellular protein modification process	EnsemblGenomes	N/A	IEA
GO:0006464	GO-bp	cellular protein modification process	JGI	N/A	IEA
GO:0003824	GO-mf	catalytic activity	JGI	N/A	IEA
GO:0004077	GO-mf	biotin-[acetyl-CoA-carboxylase] ligase activity	EnsemblGenomes	N/A	IEA
PTHR12835	Panther	BIOTIN PROTEIN LIGASE	JGI	N/A	IEA
PF02237	PFAM	Biotin protein ligase C terminal domain	JGI	N/A	IEA
PF03099	PFAM	Biotin/lipoate A/B protein ligase family	JGI	N/A	IEA
PWY0-1264	SoyCyc9	biotin-carboxyl carrier protein assembly	Plant Metabolic Network		ISS
GN7V-51814	SoyCyc9-rxn	biotin-[acetyl-CoA-carboxylase] ligase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.04g252900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g252900 not represented in the dataset	Glyma.04g252900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.04g252900

Paralog	Evidence	Comments
Glyma.06g109600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g252900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma04g43210	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.04g252900

Limit To All Plant Sequences

>Glyma.04g252900.2 sequence-type=transcript locus=Glyma.04g252900 ID=Glyma.04g252900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTTGCAAAAAAACAAAAAGCTATAATAATTAATAACCGGTCATAGAATGGAACCACCTTGTTTTTCCCGACCTAGGTAGCGCTTTTTTGAAGTCGGAGAAGAAACGTTGATGCTGTTGCGTAACCCTGCGTTGACAGCGTCGCTGCTATCAGCCACCACAAAGAAGCTCTACAACCACCGTTATTCTACACCTGCTGCATTCATGGCGTCTTCAGGTGTCGCGTGCAGTTTGCTGGTTTTGTGTGGCAAATCACTGGCAGAGAATGAAACTGCTAAAGCTATAAAGACCAATAACACACTGAAGCTCCCTGAGGATGAAAAACTCTCACTCGTTTTGCATTCGGAGATGGATAAATCAGTTATGCAAGGGTTTTTCCAAGTTCATTCCTATATGGATTCTCTTTCCACCAATCAATTTGGCAGGCTTCTCGTTTGGTCTCCAGACTTAACTTCAACACACGATGTCGTTTCGCACAACTTTTGTGAGCTCCCCATTGGTACAGTTTGCATTGCTGATGTTCAGACCAAGGGACGAGGTCGGTCGAAGAATGTCTGGGAGTCTCCATTAGGTTGCCTCATGTTTTCTTTTACTATGCAAATGGAGGATGGACGAGTCGTTCCTTTGGTTCAGTATGTGGTTTCCCTTGCTATGACAGAGGCAATCAAGGATATCTGTGACAAAAATGGGTTACCCAGCATAGATGTTAAAATCAAGTGGCCAAATGATCTTTACTTAAATGGCTCTAAAGTTGGAGGCATTCTTTGTACCTCAACATATAAATCAAAGAAGTTCAATGTAAGTGCAGGAATAGGCTTGAATGTCAATAATAAGAAGCCAACGACATCCTTAAATACAATTCTAAAAGGGTTCTATTCAGGAGCTTACCAATTTCAAAGAGAAGAAGTTCTAGCAGCCTTTTTTAACAAATTTGAGATATTTTATGATTTATTTCTGAATCAAGGTACTGTCCTATTCAACTCATTAGTTTGATAATGCTTGTTGGTATCATCTCTGACATCATACCTCAATTCTTCTGGTTATCGTGTTTGTGTAAGCATTTTGTACCTGTGTTCATTCCTTTATCTCTCTTTCTCTGAAAAAACTCATGGATGGATAAATTTTTTTAACAATTTGAATCAACTTCTTGAATGTATACTTCTCACACCCTTGCGTATCAATCACATTGGAAGACACTTATAAACCTATTCTTTTACATTTAAAACCCATCGAGCTAAGCATCATATATAGAGATGGAAATTGTGGAAATTTTGTATTTTGGGGAACTGGAGAAACTTGCAAGGGA

Coding sequences of Glyma.04g252900

Limit To All Plant Sequences

>Glyma.04g252900.1 sequence-type=CDS polypeptide=Glyma.04g252900.1.p locus=Glyma.04g252900 ID=Glyma.04g252900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTGTTGCGTAACCCTGCGTTGACAGCGTCGCTGCTATCAGCCACCACAAAGAAGCTCTACAACCACCGTTATTCTACACCTGCTGCATTCATGGCGTCTTCAGGTGTCGCGTGCAGTTTGCTGGTTTTGTGTGGCAAATCACTGGCAGAGAATGAAACTGCTAAAGCTATAAAGACCAATAACACACTGAAGCTCCCTGAGGATGAAAAACTCTCACTCGTTTTGCATTCGGAGATGGATAAATCAGTTATGCAAGGGTTTTTCCAAGTTCATTCCTATATGGATTCTCTTTCCACCAATCAATTTGGCAGGCTTCTCGTTTGGTCTCCAGACTTAACTTCAACACACGATGTCGTTTCGCACAACTTTTGTGAGCTCCCCATTGGTACAGTTTGCATTGCTGATGTTCAGACCAAGGGACGAGGTCGGTCGAAGAATGTCTGGGAGTCTCCATTAGGTTGCCTCATGTTTTCTTTTACTATGCAAATGGAGGATGGACGAGTCGTTCCTTTGGTTCAGTATGTGGTTTCCCTTGCTATGACAGAGGCAATCAAGGATATCTGTGACAAAAATGGGTTACCCAGCATAGATGTTAAAATCAAGTGGCCAAATGATCTTTACTTAAATGGCTCTAAAGTTGGAGGCATTCTTTGTACCTCAACATATAAATCAAAGAAGTTCAATGTAAGTGCAGGAATAGGCTTGAATGTCAATAATAAGAAGCCAACGACATCCTTAAATACAATTCTAAAAGGGTTCTATTCAGGAGCTTACCAATTTCAAAGAGAAGAAGTTCTAGCAGCCTTTTTTAACAAATTTGAGATATTTTATGATTTATTTCTGAATCAAGGATTTCAAACCCTAGAGGAGCTATATATCAAGACATGGTTGCACAGTGGACAGAGAGTTGTTGTACAGGAAAAGAATGAGGACAAAGTGATCGAACATGTGGTAACTATTCAGGGTTTGACATCCTCGGGATATTTGTTGGCTGTCGGTGATGACCATCAAATGTGTGAGCTCCACCCTGATGGTAATAGCTTTGACTTTTTCAAAGGACTGGTCAGGAGGAAACTCGAGTGA

>Glyma.04g252900.2 sequence-type=CDS polypeptide=Glyma.04g252900.2.p locus=Glyma.04g252900 ID=Glyma.04g252900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTGTTGCGTAACCCTGCGTTGACAGCGTCGCTGCTATCAGCCACCACAAAGAAGCTCTACAACCACCGTTATTCTACACCTGCTGCATTCATGGCGTCTTCAGGTGTCGCGTGCAGTTTGCTGGTTTTGTGTGGCAAATCACTGGCAGAGAATGAAACTGCTAAAGCTATAAAGACCAATAACACACTGAAGCTCCCTGAGGATGAAAAACTCTCACTCGTTTTGCATTCGGAGATGGATAAATCAGTTATGCAAGGGTTTTTCCAAGTTCATTCCTATATGGATTCTCTTTCCACCAATCAATTTGGCAGGCTTCTCGTTTGGTCTCCAGACTTAACTTCAACACACGATGTCGTTTCGCACAACTTTTGTGAGCTCCCCATTGGTACAGTTTGCATTGCTGATGTTCAGACCAAGGGACGAGGTCGGTCGAAGAATGTCTGGGAGTCTCCATTAGGTTGCCTCATGTTTTCTTTTACTATGCAAATGGAGGATGGACGAGTCGTTCCTTTGGTTCAGTATGTGGTTTCCCTTGCTATGACAGAGGCAATCAAGGATATCTGTGACAAAAATGGGTTACCCAGCATAGATGTTAAAATCAAGTGGCCAAATGATCTTTACTTAAATGGCTCTAAAGTTGGAGGCATTCTTTGTACCTCAACATATAAATCAAAGAAGTTCAATGTAAGTGCAGGAATAGGCTTGAATGTCAATAATAAGAAGCCAACGACATCCTTAAATACAATTCTAAAAGGGTTCTATTCAGGAGCTTACCAATTTCAAAGAGAAGAAGTTCTAGCAGCCTTTTTTAACAAATTTGAGATATTTTATGATTTATTTCTGAATCAAGGTACTGTCCTATTCAACTCATTAGTTTGA

Predicted protein sequences of Glyma.04g252900

Limit To All Plant Sequences

>Glyma.04g252900.1.p sequence-type=predicted peptide transcript=Glyma.04g252900.1 locus=Glyma.04g252900 ID=Glyma.04g252900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLLRNPALTASLLSATTKKLYNHRYSTPAAFMASSGVACSLLVLCGKSLAENETAKAIKTNNTLKLPEDEKLSLVLHSEMDKSVMQGFFQVHSYMDSLSTNQFGRLLVWSPDLTSTHDVVSHNFCELPIGTVCIADVQTKGRGRSKNVWESPLGCLMFSFTMQMEDGRVVPLVQYVVSLAMTEAIKDICDKNGLPSIDVKIKWPNDLYLNGSKVGGILCTSTYKSKKFNVSAGIGLNVNNKKPTTSLNTILKGFYSGAYQFQREEVLAAFFNKFEIFYDLFLNQGFQTLEELYIKTWLHSGQRVVVQEKNEDKVIEHVVTIQGLTSSGYLLAVGDDHQMCELHPDGNSFDFFKGLVRRKLE*

>Glyma.04g252900.2.p sequence-type=predicted peptide transcript=Glyma.04g252900.2 locus=Glyma.04g252900 ID=Glyma.04g252900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLLRNPALTASLLSATTKKLYNHRYSTPAAFMASSGVACSLLVLCGKSLAENETAKAIKTNNTLKLPEDEKLSLVLHSEMDKSVMQGFFQVHSYMDSLSTNQFGRLLVWSPDLTSTHDVVSHNFCELPIGTVCIADVQTKGRGRSKNVWESPLGCLMFSFTMQMEDGRVVPLVQYVVSLAMTEAIKDICDKNGLPSIDVKIKWPNDLYLNGSKVGGILCTSTYKSKKFNVSAGIGLNVNNKKPTTSLNTILKGFYSGAYQFQREEVLAAFFNKFEIFYDLFLNQGTVLFNSLV*

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