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Report for Sequence Feature Glyma.04g252300

Feature Type:gene_model
Chromosome:Gm04
Start:51906741
stop:51909803
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g252300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G77690.1AT like AUX1 3 JGI N/AIEA
GO:0003333GO-bp amino acid transmembrane transport EnsemblGenomesN/AIEA
GO:0005886GO-cc plasma membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0015171GO-mf amino acid transmembrane transporter activity EnsemblGenomesN/AIEA
KOG1303 KOG Amino acid transporters JGI N/AIEA
PTHR22950Panther AMINO ACID TRANSPORTER JGI N/AIEA
PTHR22950:SF3Panther AUXIN TRANSPORTER-LIKE PROTEIN 2-RELATED JGI N/AIEA
PF01490PFAM Transmembrane amino acid transporter protein JGI N/AIEA

Proteins Associated with Glyma.04g252300
LocusGene SymbolProtein Name
LAX6 auxin transporter-like protein 6

Expression Patterns of Glyma.04g252300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g252300
ParalogEvidenceComments
Glyma.06g110200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g252300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g43150 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g252300
>Glyma.04g252300.2 sequence-type=transcript locus=Glyma.04g252300 ID=Glyma.04g252300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AACTAAGCAAGGTCCCCACCACCAAGGCCATTCACATTCAGTACTTTGCTGTCAAAAAAGTTTATATAAGGAAATTAGGGAAGCTACACAAGAATGTATGTGAAAGGGTGAATTAAAAGCAAGCACTTCTTCTCTCCTATCTATATCTTTTCTCACTTAGTCTTGTGTTGTCTTCCCCCACAACACACTTGAAGGGAGAGATAACAATGGCTTCTGAGAAGGTTGAGACTGTTGTTGCAGGGAATTACTTAGAAATGGAGAGGGAAGAGGAAGGTTCTAAGTCCACCAGTGGCAAATTGTCTAGGCTCTTTTGGCATGGTGGCTCTGTCTATGATGCATGGTTTAGCTGTGCTTCTAATCAGGTTGCACAAGTGTTACTGACACTACCATATTCCTTTTCACAACTGGGGATGTTATCTGGGATCATATTTCAGCTTTTTTATGGACTGATGGGAAGCTGGACTGCTTACCTTATCAGTGTCCTTTATGTTGAGTACAGAACCAGAAAGGAGAGAGAAAAAGTTGATTTCAGAAACCATGTTATTCAGTGGTTTGAAGTGCTTGATGGACTTTTGGGCAAACACTGGAGAAATCTTGGTCTTTTTTTCAACTGTACTTTCCTTCTGTTTGGATCAGTAATTCAACTAATTGCTTGTGCAAGTAACATATACTACATAAATGACAATCTGGACAAAAGAACTTGGACTTACATCTTTGGCGCATGCTGTGCAACAACAGTCTTCATCCCTTCTTTCCACAATTACAGAATGTGGTCATTCTTAGGCCTCGTGATGACCACTTACACTGCATGGTATATGACCATAGCTTCCCTTACCCATGGCCAGGCTGAGGGGGTGACGCACACAGGGCCAGCCAAATTGGTTCTCTACTTCACTGGGGCTACCAACATTCTCTATACTTTTGGTGGACATGCTGTTACAGTGGAAATTATGCATGCAATGTGGAAGCCACAGAAGTTTAAGATGATATATCTGATCGCAACCCTATATGTGCTGACCCTAACTTTGCCATCGGCATCTGCAGTTTATTGGGCATTTGGGGACCAGCTTCTCACCCATTCCAATGCCCTCTCATTGCTCCCAAGGTCTGGCTTCAGAGATACCGCCGTCATCCTCATGCTCATTCATCAGTTCATAACTTTTGGATTTGCTTGCACTCCTTTATACTTCGTGTGGGAGAAATTCATTGGGGTGCATGAGACCAAGAGTTTGTTCAAAAGAGCTTTGGCTAGACTTCCTGTTGTGATTCCAATATGGTTCCTGGCAATCATATTCCCTTTCTTTGGTCCCATTAACTCAACTGTTGGATCTCTCCTTGTCAGCTTCACTGTTTACATCATTCCTGCTTTGGCTCACATGGTTACCTTTGCTTCAGCACCGGCTAGAGAGGTAATTAGATCATGCACCTAGCTACAACTGATTATTTTTTAAATTCATATACACATATGCTGCACCATCCAATGCTTCACTTGGTGCTTATTATTTAATTACCAGCACATGCATACATTCAATTGCCGCCACTTCAtttttcttttatttctcttttttttttATCATATCATATAACTTATTACGACTATTTTTCTTTCTCTCTCTTTGTATAGATTAGCATAATGTCTCCATGAACAATttttcttttcttttttgttcatttttattttgtttcttAACAGAATGCTGTGGAGAGACCACCATCAAAGTTAGGAGGTTGGGTAGGATTGTACTCCATGAACgtgtttgtggtggtatgggttttggtggtaggatttgggttggGAGGATGGGCAAGCATGATCAATTTCATACACCAAATTGACACATTTGGGCTATTTGCAAAGTGCTATCAATGTCCCCCTCACAAGGCTTAAGTATAAGTAGCTTCCTTTAGTTTCTTGTGATACTTTGAGATCATACATGCGTGTAAAGAGATTGGCTTTTAATATGTACCTTTTTATTTTTCTTCCATTTATCCCGCTTTATTTTATTTTTTCACTGTAAGAAGCCAAGTCTTTTGATTGGGTCAGCTAAAGGTGCGATGGCACATCACGGCCAGCCCCTATACGAACTTACAGTTAGAATTTCCTGTGCTGATTAATCATTTCTTGTTGTGCAACTACCTTGCCATATGCTAAACTAGTTGGTTTATG
Coding sequences of Glyma.04g252300
>Glyma.04g252300.1 sequence-type=CDS polypeptide=Glyma.04g252300.1.p locus=Glyma.04g252300 ID=Glyma.04g252300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCTGAGAAGGTTGAGACTGTTGTTGCAGGGAATTACTTAGAAATGGAGAGGGAAGAGGAAGGTTCTAAGTCCACCAGTGGCAAATTGTCTAGGCTCTTTTGGCATGGTGGCTCTGTCTATGATGCATGGTTTAGCTGTGCTTCTAATCAGGTTGCACAAGTGTTACTGACACTACCATATTCCTTTTCACAACTGGGGATGTTATCTGGGATCATATTTCAGCTTTTTTATGGACTGATGGGAAGCTGGACTGCTTACCTTATCAGTGTCCTTTATGTTGAGTACAGAACCAGAAAGGAGAGAGAAAAAGTTGATTTCAGAAACCATGTTATTCAGTGGTTTGAAGTGCTTGATGGACTTTTGGGCAAACACTGGAGAAATCTTGGTCTTTTTTTCAACTGTACTTTCCTTCTGTTTGGATCAGTAATTCAACTAATTGCTTGTGCAAGTAACATATACTACATAAATGACAATCTGGACAAAAGAACTTGGACTTACATCTTTGGCGCATGCTGTGCAACAACAGTCTTCATCCCTTCTTTCCACAATTACAGAATGTGGTCATTCTTAGGCCTCGTGATGACCACTTACACTGCATGGTATATGACCATAGCTTCCCTTACCCATGGCCAGGCTGAGGGGGTGACGCACACAGGGCCAGCCAAATTGGTTCTCTACTTCACTGGGGCTACCAACATTCTCTATACTTTTGGTGGACATGCTGTTACAGTGGAAATTATGCATGCAATGTGGAAGCCACAGAAGTTTAAGATGATATATCTGATCGCAACCCTATATGTGCTGACCCTAACTTTGCCATCGGCATCTGCAGTTTATTGGGCATTTGGGGACCAGCTTCTCACCCATTCCAATGCCCTCTCATTGCTCCCAAGGTCTGGCTTCAGAGATACCGCCGTCATCCTCATGCTCATTCATCAGTTCATAACTTTTGGATTTGCTTGCACTCCTTTATACTTCGTGTGGGAGAAATTCATTGGGGTGCATGAGACCAAGAGTTTGTTCAAAAGAGCTTTGGCTAGACTTCCTGTTGTGATTCCAATATGGTTCCTGGCAATCATATTCCCTTTCTTTGGTCCCATTAACTCAACTGTTGGATCTCTCCTTGTCAGCTTCACTGTTTACATCATTCCTGCTTTGGCTCACATGGTTACCTTTGCTTCAGCACCGGCTAGAGAGAATGCTGTGGAGAGACCACCATCAAAGTTAGGAGGTTGGGTAGGATTGTACTCCATGAACGTGTTTGTGGTGGTATGGGTTTTGGTGGTAGGATTTGGGTTGGGAGGATGGGCAAGCATGATCAATTTCATACACCAAATTGACACATTTGGGCTATTTGCAAAGTGCTATCAATGTCCCCCTCACAAGGCTTAA

>Glyma.04g252300.2 sequence-type=CDS polypeptide=Glyma.04g252300.2.p locus=Glyma.04g252300 ID=Glyma.04g252300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCTGAGAAGGTTGAGACTGTTGTTGCAGGGAATTACTTAGAAATGGAGAGGGAAGAGGAAGGTTCTAAGTCCACCAGTGGCAAATTGTCTAGGCTCTTTTGGCATGGTGGCTCTGTCTATGATGCATGGTTTAGCTGTGCTTCTAATCAGGTTGCACAAGTGTTACTGACACTACCATATTCCTTTTCACAACTGGGGATGTTATCTGGGATCATATTTCAGCTTTTTTATGGACTGATGGGAAGCTGGACTGCTTACCTTATCAGTGTCCTTTATGTTGAGTACAGAACCAGAAAGGAGAGAGAAAAAGTTGATTTCAGAAACCATGTTATTCAGTGGTTTGAAGTGCTTGATGGACTTTTGGGCAAACACTGGAGAAATCTTGGTCTTTTTTTCAACTGTACTTTCCTTCTGTTTGGATCAGTAATTCAACTAATTGCTTGTGCAAGTAACATATACTACATAAATGACAATCTGGACAAAAGAACTTGGACTTACATCTTTGGCGCATGCTGTGCAACAACAGTCTTCATCCCTTCTTTCCACAATTACAGAATGTGGTCATTCTTAGGCCTCGTGATGACCACTTACACTGCATGGTATATGACCATAGCTTCCCTTACCCATGGCCAGGCTGAGGGGGTGACGCACACAGGGCCAGCCAAATTGGTTCTCTACTTCACTGGGGCTACCAACATTCTCTATACTTTTGGTGGACATGCTGTTACAGTGGAAATTATGCATGCAATGTGGAAGCCACAGAAGTTTAAGATGATATATCTGATCGCAACCCTATATGTGCTGACCCTAACTTTGCCATCGGCATCTGCAGTTTATTGGGCATTTGGGGACCAGCTTCTCACCCATTCCAATGCCCTCTCATTGCTCCCAAGGTCTGGCTTCAGAGATACCGCCGTCATCCTCATGCTCATTCATCAGTTCATAACTTTTGGATTTGCTTGCACTCCTTTATACTTCGTGTGGGAGAAATTCATTGGGGTGCATGAGACCAAGAGTTTGTTCAAAAGAGCTTTGGCTAGACTTCCTGTTGTGATTCCAATATGGTTCCTGGCAATCATATTCCCTTTCTTTGGTCCCATTAACTCAACTGTTGGATCTCTCCTTGTCAGCTTCACTGTTTACATCATTCCTGCTTTGGCTCACATGGTTACCTTTGCTTCAGCACCGGCTAGAGAGGTAATTAGATCATGCACCTAG
Predicted protein sequences of Glyma.04g252300
>Glyma.04g252300.1.p sequence-type=predicted peptide transcript=Glyma.04g252300.1 locus=Glyma.04g252300 ID=Glyma.04g252300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASEKVETVVAGNYLEMEREEEGSKSTSGKLSRLFWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGIIFQLFYGLMGSWTAYLISVLYVEYRTRKEREKVDFRNHVIQWFEVLDGLLGKHWRNLGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRMWSFLGLVMTTYTAWYMTIASLTHGQAEGVTHTGPAKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKMIYLIATLYVLTLTLPSASAVYWAFGDQLLTHSNALSLLPRSGFRDTAVILMLIHQFITFGFACTPLYFVWEKFIGVHETKSLFKRALARLPVVIPIWFLAIIFPFFGPINSTVGSLLVSFTVYIIPALAHMVTFASAPARENAVERPPSKLGGWVGLYSMNVFVVVWVLVVGFGLGGWASMINFIHQIDTFGLFAKCYQCPPHKA*

>Glyma.04g252300.2.p sequence-type=predicted peptide transcript=Glyma.04g252300.2 locus=Glyma.04g252300 ID=Glyma.04g252300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASEKVETVVAGNYLEMEREEEGSKSTSGKLSRLFWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGIIFQLFYGLMGSWTAYLISVLYVEYRTRKEREKVDFRNHVIQWFEVLDGLLGKHWRNLGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRMWSFLGLVMTTYTAWYMTIASLTHGQAEGVTHTGPAKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKMIYLIATLYVLTLTLPSASAVYWAFGDQLLTHSNALSLLPRSGFRDTAVILMLIHQFITFGFACTPLYFVWEKFIGVHETKSLFKRALARLPVVIPIWFLAIIFPFFGPINSTVGSLLVSFTVYIIPALAHMVTFASAPAREVIRSCT*






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