Glyma.04g250300

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Report for Sequence Feature Glyma.04g250300

Feature Type:	gene_model
Chromosome:	Gm04
Start:	51681851
stop:	51684811
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.04g250300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G21880.1	AT	lysm domain GPI-anchored protein 1 precursor	JGI	N/A	IEA
AT1G21880.2	AT	lysm domain GPI-anchored protein 1 precursor	JGI	N/A	IEA
GO:0016998	GO-bp	cell wall macromolecule catabolic process	JGI	N/A	IEA
PTHR23354	Panther	NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED	JGI	N/A	IEA
PTHR23354:SF38	Panther		JGI	N/A	IEA
PF01476	PFAM	LysM domain	JGI	N/A	IEA

Expression Patterns of Glyma.04g250300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g250300 not represented in the dataset	Glyma.04g250300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.04g250300

Paralog	Evidence	Comments
Glyma.06g112500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g250300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma04g42930	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.04g250300

Limit To All Plant Sequences

>Glyma.04g250300.2 sequence-type=transcript locus=Glyma.04g250300 ID=Glyma.04g250300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAGATGTCCAGCGAAGCAAGTAAAAGGTTGAAATCTCTATGATCGAAGTAGAACTAGTGAGGAAACAGTGTCCTTCCTTGCGGCTCTATTCGTGAAATGCAAAACACCTGTCTCCTACTCTAAACTCCTCTTTCGTTCGCTTTTCCCCTCCCCcaacacaacacaacacaacacaacaTTCTTTCGTGAAACTCAGAAAACCCTAAACCCCTCTCAAACCTTGTAGATTCCGACATCCTAGAATTAGTTACTGGTTTAGTAGCTTAGCTTCACTCACTTTCTATTTCTTCCAGAATGCCAAATCCAAAGCACATTATTCTGCAGAGCTTTGTCTTCCTCTGCCTGCTTCTTCAGGCATCGTCAAAATCCACGATCGAGCCATGCTCGAACTCCGACTCATGCAACGCGCTTCTGGGCTACACCCTCTACACGGACCTCAAAGTCTCCGAGGTGGCGTCGCTGTTCCAAATCGACCCCATCTCGCTCCTCACCGCGAACGCCATCGACATCTCCTACCCCGACGTCGAGCACCACATCCTCCCCTCCAAGCTCTTCCTGAAAATTCCCATCTCCTGCTCTTGCGTCGACGGCATTCGCAAATCCGTCGCTACTCACTACAAGACCCGCCCCTCCGACACCCTCTCCTCCATCGCCGACGCCGTCTACGCCGGCCTCGTCTCCTCCGACCAGCTCCGCGAGGCCAATTCCATCTCCGACCCTTCGGTTCTCGATGTCGGACAGAACCTCGTCGTTCCTCTTCCTTGCACGTGCTTCAACGGCTCCGATAACTCTCTCCCCGCGATTTACCTCTCTTATGTTGTTCGCCCCGTTGATACCCTCGCTGCCATTGCTGCTAGGTACTTCACCACCCTCACTGATTTGATGAATGTTAATGCCATGGGAAGCACTGCTATTAACGATGGCGATATCCTCGCTGTTCCAATTCCCGCTTGTGCTTCGAATTTTCCGAAATCCGCCTCTGATTTTGGCTTGCTTGTCCCTAATGGAAGCTATGCCATTACCGCGGGGCACTGTGTGCAATGTAGCTGTGGACCCAAAAACCTTGATTTGTACTGTATGCCGGCTTCTCTGGCTGTTTCTTGCTCCAGCATGCAATGTAGAGGCAGCAACCTTATGCTTGGGAATGTTACAGTGCAGCAGACTAGTGGTGGTTGCAATGTTACGTCTTGCAATTATGATGGCATTGTTAATGGCAGCATTGTAACAACGTATGTTTATCCTCTGTCTGCATACCTGCTGCATTTTCTGATTTACATATTCTAGTAATGTCTATTTTGCTTAACTGGTCTTTGAATTGAAGCTTGTTTAACATTTCTTGACACCCTG

Coding sequences of Glyma.04g250300

Limit To All Plant Sequences

>Glyma.04g250300.1 sequence-type=CDS polypeptide=Glyma.04g250300.1.p locus=Glyma.04g250300 ID=Glyma.04g250300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCAAATCCAAAGCACATTATTCTGCAGAGCTTTGTCTTCCTCTGCCTGCTTCTTCAGGCATCGTCAAAATCCACGATCGAGCCATGCTCGAACTCCGACTCATGCAACGCGCTTCTGGGCTACACCCTCTACACGGACCTCAAAGTCTCCGAGGTGGCGTCGCTGTTCCAAATCGACCCCATCTCGCTCCTCACCGCGAACGCCATCGACATCTCCTACCCCGACGTCGAGCACCACATCCTCCCCTCCAAGCTCTTCCTGAAAATTCCCATCTCCTGCTCTTGCGTCGACGGCATTCGCAAATCCGTCGCTACTCACTACAAGACCCGCCCCTCCGACACCCTCTCCTCCATCGCCGACGCCGTCTACGCCGGCCTCGTCTCCTCCGACCAGCTCCGCGAGGCCAATTCCATCTCCGACCCTTCGGTTCTCGATGTCGGACAGAACCTCGTCGTTCCTCTTCCTTGCACGTGCTTCAACGGCTCCGATAACTCTCTCCCCGCGATTTACCTCTCTTATGTTGTTCGCCCCGTTGATACCCTCGCTGCCATTGCTGCTAGGTACTTCACCACCCTCACTGATTTGATGAATGTTAATGCCATGGGAAGCACTGCTATTAACGATGGCGATATCCTCGCTGTTCCAATTCCCGCTTGTGCTTCGAATTTTCCGAAATCCGCCTCTGATTTTGGCTTGCTTGTCCCTAATGGAAGCTATGCCATTACCGCGGGGCACTGTGTGCAATGTAGCTGTGGACCCAAAAACCTTGATTTGTACTGTATGCCGGCTTCTCTGGCTGTTTCTTGCTCCAGCATGCAATGTAGAGGCAGCAACCTTATGCTTGGGAATGTTACAGTGCAGCAGACTAGTGGTGGTTGCAATGTTACGTCTTGCAATTATGATGGCATTGTTAATGGCAGCATTGTAACAACGTTGTCCCCCTCTCTTCAGCCTCGATGTCCAGGGCTGCAGGAATTCCCTCCCCTTGTTGCTCCACCTACAACCGTTGCAAGGGACACAGTGTTTGCACCAGCACCAGCACCACTGTTCGATGGAGCTGGTCCAGCATCACCCAAATCCTCGCTGGTGCCTTCAGCGGGGCTTCCAGGAGGATTCTCTCCTGCAAATGGCCCTATTAGCGGCATTTCTTCCGGGGCTTCTGTTGCATGCTCCTTGGTGAAACCATTGCCCACTTTGACGAATGCACTTGTGTTATTGCTTGTCAAGTTGATGATACCTGTGGCATTGTAA

>Glyma.04g250300.2 sequence-type=CDS polypeptide=Glyma.04g250300.2.p locus=Glyma.04g250300 ID=Glyma.04g250300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCAAATCCAAAGCACATTATTCTGCAGAGCTTTGTCTTCCTCTGCCTGCTTCTTCAGGCATCGTCAAAATCCACGATCGAGCCATGCTCGAACTCCGACTCATGCAACGCGCTTCTGGGCTACACCCTCTACACGGACCTCAAAGTCTCCGAGGTGGCGTCGCTGTTCCAAATCGACCCCATCTCGCTCCTCACCGCGAACGCCATCGACATCTCCTACCCCGACGTCGAGCACCACATCCTCCCCTCCAAGCTCTTCCTGAAAATTCCCATCTCCTGCTCTTGCGTCGACGGCATTCGCAAATCCGTCGCTACTCACTACAAGACCCGCCCCTCCGACACCCTCTCCTCCATCGCCGACGCCGTCTACGCCGGCCTCGTCTCCTCCGACCAGCTCCGCGAGGCCAATTCCATCTCCGACCCTTCGGTTCTCGATGTCGGACAGAACCTCGTCGTTCCTCTTCCTTGCACGTGCTTCAACGGCTCCGATAACTCTCTCCCCGCGATTTACCTCTCTTATGTTGTTCGCCCCGTTGATACCCTCGCTGCCATTGCTGCTAGGTACTTCACCACCCTCACTGATTTGATGAATGTTAATGCCATGGGAAGCACTGCTATTAACGATGGCGATATCCTCGCTGTTCCAATTCCCGCTTGTGCTTCGAATTTTCCGAAATCCGCCTCTGATTTTGGCTTGCTTGTCCCTAATGGAAGCTATGCCATTACCGCGGGGCACTGTGTGCAATGTAGCTGTGGACCCAAAAACCTTGATTTGTACTGTATGCCGGCTTCTCTGGCTGTTTCTTGCTCCAGCATGCAATGTAGAGGCAGCAACCTTATGCTTGGGAATGTTACAGTGCAGCAGACTAGTGGTGGTTGCAATGTTACGTCTTGCAATTATGATGGCATTGTTAATGGCAGCATTGTAACAACGTATGTTTATCCTCTGTCTGCATACCTGCTGCATTTTCTGATTTACATATTCTAG

Predicted protein sequences of Glyma.04g250300

Limit To All Plant Sequences

>Glyma.04g250300.1.p sequence-type=predicted peptide transcript=Glyma.04g250300.1 locus=Glyma.04g250300 ID=Glyma.04g250300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPNPKHIILQSFVFLCLLLQASSKSTIEPCSNSDSCNALLGYTLYTDLKVSEVASLFQIDPISLLTANAIDISYPDVEHHILPSKLFLKIPISCSCVDGIRKSVATHYKTRPSDTLSSIADAVYAGLVSSDQLREANSISDPSVLDVGQNLVVPLPCTCFNGSDNSLPAIYLSYVVRPVDTLAAIAARYFTTLTDLMNVNAMGSTAINDGDILAVPIPACASNFPKSASDFGLLVPNGSYAITAGHCVQCSCGPKNLDLYCMPASLAVSCSSMQCRGSNLMLGNVTVQQTSGGCNVTSCNYDGIVNGSIVTTLSPSLQPRCPGLQEFPPLVAPPTTVARDTVFAPAPAPLFDGAGPASPKSSLVPSAGLPGGFSPANGPISGISSGASVACSLVKPLPTLTNALVLLLVKLMIPVAL*

>Glyma.04g250300.2.p sequence-type=predicted peptide transcript=Glyma.04g250300.2 locus=Glyma.04g250300 ID=Glyma.04g250300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPNPKHIILQSFVFLCLLLQASSKSTIEPCSNSDSCNALLGYTLYTDLKVSEVASLFQIDPISLLTANAIDISYPDVEHHILPSKLFLKIPISCSCVDGIRKSVATHYKTRPSDTLSSIADAVYAGLVSSDQLREANSISDPSVLDVGQNLVVPLPCTCFNGSDNSLPAIYLSYVVRPVDTLAAIAARYFTTLTDLMNVNAMGSTAINDGDILAVPIPACASNFPKSASDFGLLVPNGSYAITAGHCVQCSCGPKNLDLYCMPASLAVSCSSMQCRGSNLMLGNVTVQQTSGGCNVTSCNYDGIVNGSIVTTYVYPLSAYLLHFLIYIF*

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