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Report for Sequence Feature Glyma.04g248900

Feature Type:gene_model
Chromosome:Gm04
Start:51579236
stop:51586066
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g248900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G77470.1AT replication factor C subunit 3 JGI N/AIEA
GO:0006260GO-bp DNA replication EnsemblGenomesN/AIEA
GO:0006261GO-bp DNA-dependent DNA replication EnsemblGenomesN/AIEA
GO:0006281GO-bp DNA repair EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005663GO-cc DNA replication factor C complex EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003689GO-mf DNA clamp loader activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
KOG0990 KOG Replication factor C, subunit RFC5 JGI N/AIEA
PTHR11669Panther REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT JGI N/AIEA
PF00004PFAM ATPase family associated with various cellular activities (AAA) JGI N/AIEA
PF08542PFAM Replication factor C C-terminal domain JGI N/AIEA

Expression Patterns of Glyma.04g248900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g248900
ParalogEvidenceComments
Glyma.06g114100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g248900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g42790 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g248900
>Glyma.04g248900.2 sequence-type=transcript locus=Glyma.04g248900 ID=Glyma.04g248900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACTGCACCAGGTCTTTAATCCGCTAGAACTAGAATATGTGTTTGGCGCCACTAGCCTCTGCTGTCACTTGTGAGCGGTGAATGCAAATTTCAGTTCTCAACAACGCACTGAAAGAAGAGAGTGCGTATTAGCACCGTGACCTAACAATGGCGGAGACGAACCATCATATGGACATCGACAGCGACGACCACACTTACACCGCGAGGCCCGACAAGGCTAAAAGTGTCGTCGTCGCCAGCAACCCTGCCGCCGCCGGCAAGGCCATTCCGTGGGTCGAAAAATATCGCCCTCTGTCCCTCGACGACGTCGCCGCTCATCGTGACATTGTCGATACCATTGATAGGCTGACCACTGAGAACAGATTGCCCCATCTTCTGTTGTATGGCCCTCCTGGCACGGGCAAAACATCAACGATTCTCGCTGTGGCACGCAAACTATATGGTTCACAGTACCAAAATATGATTTTGGAGCTCAATGCATCAGATGATAGAGGAATTGATGTCGTGCGACAGCAGATTCAAGATTTTGCTAGCACTCAGAGCTTATCATTTGGTGTCAAGTCCTCTGTAAAACTTGTATTGTTGGATGAAGCAGATGCCATGACAAAGGATGCCCAATTTGCATTACGTAGAGTGATTGAGAAATATACAAAAAGCACTAGGTTTGCACTTATCTGTAATCATGTAAACAAGATTATTCCCGCACTTCAATCAAGATGCACTCGGTTTCGGTTTGCCCCTCTTGATGCCGTCCATGTCACTGAAAGACTGAAACATGTTATCAAGGCTGAAGGGCTTGATGTTGAAGACAGTGGCTTAGCAGCTCTTGTTCGGCTTAGCAATGGTGATATGAGAAAGGCTTTGAATATTCTTCAGTCAACACATATGGCTTCTCAGCAGATAACAGAAGAAACTGTTTACCTGTGCACTGGAAATCCATTGCCCAAAGACATTGAGCAAATATCTTACTGGCTTCTAAATGAACAATTTGCAGATAGCTTTAAAAGTATTGAGTGACCTGTCACCCTTTATTTGTG
Coding sequences of Glyma.04g248900
>Glyma.04g248900.1 sequence-type=CDS polypeptide=Glyma.04g248900.1.p locus=Glyma.04g248900 ID=Glyma.04g248900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGAGACGAACCATCATATGGACATCGACAGCGACGACCACACTTACACCGCGAGGCCCGACAAGGCTAAAAGTGTCGTCGTCGCCAGCAACCCTGCCGCCGCCGGCAAGGCCATTCCGTGGGTCGAAAAATATCGCCCTCTGTCCCTCGACGACGTCGCCGCTCATCGTGACATTGTCGATACCATTGATAGGCTGACCACTGAGAACAGATTGCCCCATCTTCTGTTGTATGGCCCTCCTGGCACGGGCAAAACATCAACGATTCTCGCTGTGGCACGCAAACTATATGGTTCACAGTACCAAAATATGATTTTGGAGCTCAATGCATCAGATGATAGAGGAATTGATGTCGTGCGACAGCAGATTCAAGATTTTGCTAGCACTCAGAGCTTATCATTTGGTGTCAAGTCCTCTGTAAAACTTGTATTGTTGGATGAAGCAGATGCCATGACAAAGGATGCCCAATTTGCATTACGTAGAGTGATTGAGAAATATACAAAAAGCACTAGGTTTGCACTTATCTGTAATCATGTAAACAAGATTATTCCCGCACTTCAATCAAGATGCACTCGGTTTCGGTTTGCCCCTCTTGATGCCGTCCATGTCACTGAAAGACTGAAACATGTTATCAAGGCTGAAGGGCTTGATGTTGAAGACAGTGGCTTAGCAGCTCTTGTTCGGCTTAGCAATGGTGATATGAGAAAGGCTTTGAATATTCTTCAGTCAACACATATGGCTTCTCAGCAGATAACAGAAGAAACTGTTTACCTGTGCACTGGAAATCCATTGCCCAAAGACATTGAGCAAATATCTTACTGGCTTCTAAATGAACAATTTGCAGATAGCTTTAAAAGAATAGATGAAATGAAGACAAGGAAAGGGTTGGCCCTGGTTGATATTGTCAGAGAAGTGACATTGTTTGTTTTTAAGATTAAGATGCCTTCAGCTGTTCGAGTACAGTTGATGAATGATTTAGCGGATATAGAGTACAGATTAAGTTTTGGGTGCAACGATAAGCTTCAGCTCGGATCGGTTATTGCTTCTTTTTCACGTGCTAGATCTGCACTGGTTGCGGCTGCTACGTAG

>Glyma.04g248900.2 sequence-type=CDS polypeptide=Glyma.04g248900.2.p locus=Glyma.04g248900 ID=Glyma.04g248900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGAGACGAACCATCATATGGACATCGACAGCGACGACCACACTTACACCGCGAGGCCCGACAAGGCTAAAAGTGTCGTCGTCGCCAGCAACCCTGCCGCCGCCGGCAAGGCCATTCCGTGGGTCGAAAAATATCGCCCTCTGTCCCTCGACGACGTCGCCGCTCATCGTGACATTGTCGATACCATTGATAGGCTGACCACTGAGAACAGATTGCCCCATCTTCTGTTGTATGGCCCTCCTGGCACGGGCAAAACATCAACGATTCTCGCTGTGGCACGCAAACTATATGGTTCACAGTACCAAAATATGATTTTGGAGCTCAATGCATCAGATGATAGAGGAATTGATGTCGTGCGACAGCAGATTCAAGATTTTGCTAGCACTCAGAGCTTATCATTTGGTGTCAAGTCCTCTGTAAAACTTGTATTGTTGGATGAAGCAGATGCCATGACAAAGGATGCCCAATTTGCATTACGTAGAGTGATTGAGAAATATACAAAAAGCACTAGGTTTGCACTTATCTGTAATCATGTAAACAAGATTATTCCCGCACTTCAATCAAGATGCACTCGGTTTCGGTTTGCCCCTCTTGATGCCGTCCATGTCACTGAAAGACTGAAACATGTTATCAAGGCTGAAGGGCTTGATGTTGAAGACAGTGGCTTAGCAGCTCTTGTTCGGCTTAGCAATGGTGATATGAGAAAGGCTTTGAATATTCTTCAGTCAACACATATGGCTTCTCAGCAGATAACAGAAGAAACTGTTTACCTGTGCACTGGAAATCCATTGCCCAAAGACATTGAGCAAATATCTTACTGGCTTCTAAATGAACAATTTGCAGATAGCTTTAAAAGTATTGAGTGA
Predicted protein sequences of Glyma.04g248900
>Glyma.04g248900.1.p sequence-type=predicted peptide transcript=Glyma.04g248900.1 locus=Glyma.04g248900 ID=Glyma.04g248900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAETNHHMDIDSDDHTYTARPDKAKSVVVASNPAAAGKAIPWVEKYRPLSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGSQYQNMILELNASDDRGIDVVRQQIQDFASTQSLSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVIKAEGLDVEDSGLAALVRLSNGDMRKALNILQSTHMASQQITEETVYLCTGNPLPKDIEQISYWLLNEQFADSFKRIDEMKTRKGLALVDIVREVTLFVFKIKMPSAVRVQLMNDLADIEYRLSFGCNDKLQLGSVIASFSRARSALVAAAT*

>Glyma.04g248900.2.p sequence-type=predicted peptide transcript=Glyma.04g248900.2 locus=Glyma.04g248900 ID=Glyma.04g248900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAETNHHMDIDSDDHTYTARPDKAKSVVVASNPAAAGKAIPWVEKYRPLSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGSQYQNMILELNASDDRGIDVVRQQIQDFASTQSLSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVIKAEGLDVEDSGLAALVRLSNGDMRKALNILQSTHMASQQITEETVYLCTGNPLPKDIEQISYWLLNEQFADSFKSIE*






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