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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G69740.1 | AT | Aldolase superfamily protein | JGI | N/A | IEA |
| GO:0006779 | GO-bp | porphyrin-containing compound biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0006782 | GO-bp | protoporphyrinogen IX biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0006783 | GO-bp | heme biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0015995 | GO-bp | chlorophyll biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0033014 | GO-bp | tetrapyrrole biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0033014 | GO-bp | tetrapyrrole biosynthetic process | JGI | N/A | IEA |
| GO:0005829 | GO-cc | cytosol | EnsemblGenomes | N/A | IEA |
| GO:0009507 | GO-cc | chloroplast | EnsemblGenomes | N/A | IEA |
| GO:0009536 | GO-cc | plastid | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0004655 | GO-mf | porphobilinogen synthase activity | EnsemblGenomes | N/A | IEA |
| GO:0004655 | GO-mf | porphobilinogen synthase activity | JGI | N/A | IEA |
| GO:0008270 | GO-mf | zinc ion binding | EnsemblGenomes | N/A | IEA |
| GO:0016829 | GO-mf | lyase activity | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | JGI | N/A | IEA |
| KOG2794 | KOG | Delta-aminolevulinic acid dehydratase | JGI | N/A | IEA |
| PTHR11458 | Panther | PORPHOBILINOGEN SYNTHASE | JGI | N/A | IEA |
| PF00490 | PFAM | Delta-aminolevulinic acid dehydratase | JGI | N/A | IEA |
| PWY-5188 | SoyCyc9 | tetrapyrrole biosynthesis I (from glutamate) | Plant Metabolic Network | ISS | |
| PWY-5918 | SoyCyc9 | superpathay of heme b biosynthesis from glutamate | Plant Metabolic Network | ISS | |
| GN7V-53430 | SoyCyc9-rxn | porphobilinogen synthase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| ALAD | delta-aminolevulinic acid dehydratase, chloroplastic | |
| HEMB | aminolevulinate, delta-, dehydratase |
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Glyma.04g247700 not represented in the dataset |
Glyma.04g247700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.06g115000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma04g42670 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.04g247700.1 sequence-type=CDS polypeptide=Glyma.04g247700.1.p locus=Glyma.04g247700 ID=Glyma.04g247700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCAATGGCTTCTTCAATCCCTAATGCGCCTTCTGCGTTCAATTCTCAGAGCTACGTTGGTCTCAGAGCGCCACTGAGGACCTTCAACTTTTCTTCTCCTCAAGCTGCCAAAATTCCTCGCTCCCAACGCCTTTTCGTCGTCAGAGCCTCCGATTCGGAGTTCGAAGCCGCCGTTGTCGCCGGTAAGGTTCCGCCGGCGCCTCCCGTGCCGCCCAGACCGGCGGCTCCGGTTGGAACACCGGTGGTTCCTTCACTTCCACTTCACCGGCGTCCTCGTCGGAACCGGAAGTCGCCGGCGCTTCGGTCGGCTTTTCAGGAAACGAGCATTTCGCCGGCGAATTTCGTGTATCCGCTTTTCATTCACGAAGGTGAAGAGGATACTCCAATTGGGGCTATGCCTGGATGCTACAGGCTTGGGTGGAGGCATGGACTTGTAGAAGAGGTTGCAAAAGCACGGGATGTTGGTGTTAATAGTGTTGTGCTCTTCCCCAAAATTCCAGATGCTTTGAAGTCTCCCACAGGAGATGAAGCATACAATGAAAATGGTTTAGTGCCTCGAACAATACGTTTGCTCAAGGATAAGTACCCAGACCTTGTTATCTATACAGATGTTGCATTAGATCCTTATTCATCAGATGGGCATGATGGCATAGTTAGAGAAGATGGAGTTATTATGAATGATGAGACAGTTCATCAGCTATGTAAACAAGCTGTAGCCCAGGCCCAAGCTGGAGCAGATGTTGTCAGTCCTAGTGATATGATGGATGGTCGGGTAGGAGCACTGCGTGCAGCTCTGGATGCTGAAGGCTTTCAGCATGTTTCTATAATGTCCTATACAGCAAAGTATGCAAGTTCTTTTTATGGTCCATTTAGAGAGGCACTAGACTCAAACCCCCGGTTTGGAGACAAGAAAACTTATCAGATGAACCCAGCTAATTACAGAGAGGCTCTGACTGAGATGCGGGAGGATGAATCTGAAGGAGCTGACATTCTCTTGGTGAAGCCTGGTCTTCCTTACTTGGATATCATAAGGCTGCTCAGGGATAATTCTCCTTTGCCAATTGCAGCATACCAGGTTTCTGGTGAATATGCAATGATAAAGGCTGCCGGTGCTCTCAAAATGATAGACGAAGAAAAGGTTATGATGGAGTCACTGATGTGCCTCCGAAGGGCCGGTGCTGATATCATCCTCACATATTCTGCTCTGCAAGCTGCCAGATGTTTGTGTGGAGAGAAGAGGTGA
>Glyma.04g247700.1.p sequence-type=predicted peptide transcript=Glyma.04g247700.1 locus=Glyma.04g247700 ID=Glyma.04g247700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAMASSIPNAPSAFNSQSYVGLRAPLRTFNFSSPQAAKIPRSQRLFVVRASDSEFEAAVVAGKVPPAPPVPPRPAAPVGTPVVPSLPLHRRPRRNRKSPALRSAFQETSISPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVEEVAKARDVGVNSVVLFPKIPDALKSPTGDEAYNENGLVPRTIRLLKDKYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVAQAQAGADVVSPSDMMDGRVGALRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALTEMREDESEGADILLVKPGLPYLDIIRLLRDNSPLPIAAYQVSGEYAMIKAAGALKMIDEEKVMMESLMCLRRAGADIILTYSALQAARCLCGEKR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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