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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G21690.1 | AT | ATPase family associated with various cellular activities (AAA) | JGI | N/A | IEA |
| GO:0006119 | GO-bp | oxidative phosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0006260 | GO-bp | DNA replication | EnsemblGenomes | N/A | IEA |
| GO:0009060 | GO-bp | aerobic respiration | EnsemblGenomes | N/A | IEA |
| GO:0009060 | GO-bp | aerobic respiration | JGI | N/A | IEA |
| GO:0022900 | GO-bp | electron transport chain | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:1902600 | GO-bp | proton transmembrane transport | EnsemblGenomes | N/A | IEA |
| GO:0005739 | GO-cc | mitochondrion | EnsemblGenomes | N/A | IEA |
| GO:0005743 | GO-cc | mitochondrial inner membrane | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | JGI | N/A | IEA |
| GO:0070469 | GO-cc | respiratory chain | EnsemblGenomes | N/A | IEA |
| GO:0003677 | GO-mf | DNA binding | EnsemblGenomes | N/A | IEA |
| GO:0004129 | GO-mf | cytochrome-c oxidase activity | EnsemblGenomes | N/A | IEA |
| GO:0004129 | GO-mf | cytochrome-c oxidase activity | JGI | N/A | IEA |
| GO:0005506 | GO-mf | iron ion binding | EnsemblGenomes | N/A | IEA |
| GO:0005506 | GO-mf | iron ion binding | JGI | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| GO:0009055 | GO-mf | electron transfer activity | EnsemblGenomes | N/A | IEA |
| GO:0009055 | GO-mf | electron carrier activity | JGI | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0020037 | GO-mf | heme binding | EnsemblGenomes | N/A | IEA |
| GO:0020037 | GO-mf | heme binding | JGI | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| KOG0989 | KOG | Replication factor C, subunit RFC4 | JGI | N/A | IEA |
| PTHR11669 | Panther | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | JGI | N/A | IEA |
| PF00004 | PFAM | ATPase family associated with various cellular activities (AAA) | JGI | N/A | IEA |
| PF00115 | PFAM | Cytochrome C and Quinol oxidase polypeptide I | JGI | N/A | IEA |
| PF08542 | PFAM | Replication factor C C-terminal domain | JGI | N/A | IEA |
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Glyma.04g246800 not represented in the dataset |
Glyma.04g246800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.06g116000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma04g42550 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.04g246800.1 sequence-type=CDS polypeptide=Glyma.04g246800.1.p locus=Glyma.04g246800 ID=Glyma.04g246800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGCCAATCCTGCAGAGCACTCAGCCATGGGTCGAGAAATACCGGCCAAAGCAAGTGAAAGATGTTGCCCACCAAGATGAAGTTGTTCGATGTCCCCACATGCTCTTCTATGGTCCTCCCGGCACAGGAAAAACAACGACTGCCCTTGCAATTGCCCATCAGCTTTTTGGACCTGAGCTCTATAAGTCTAGGGTGCTGGAGCTGAATGCAAGTGATGATAGAGGGATTAATGTTGTTCGAACAAAGATAAAAGATTTTGCTGCTGTTGCTGTTGGTACTAATCAGCGTAAAAGTGGTTATCCTTGTCCACCATTTAAGATTATTGTTCTAGACGAGGCAGATTCAATGACTGAAGATGCTCAGTTTTATGATTTCACACCATCTACAACTGCTGTACAGAATGCCCTGAGGCGTACAATGGAAACTTACTCTAAAGTTACAAGGTTCTTTTTTATATGCAACTATGTTAGCAGGATTATAGAACCACTTGCTTCAAGGTGTGCAAAATTCAGGTTCAAACCATTATCAGAAGAAATCATGAGCAGCCGGATATTATACATCTCCCAAGAAGAGGGACTCTGTCTTGATGCTGAGGCTCTTTCAACCCTGAGTTCTATTTCTCATGGAGATCTTCGTCGGGCAATCACATACTTGCAGTCTGCAGCTCGCTTATTTGGATCTTCAATTTCTTCAGAGAATCTGATTTCTGTGTCTGGGGTTGTTCCGGCAAAGGTTGTGGAGGAACTTCTTAAAGCTTGCAAAAGTGGTAATTTTGATTTGGCAAACAAGGAAGTCAACAATTTCATTGCAGAGGGATATCCAGCTTCTCAGATGCTTACTCAGTTATTTGAGTCCATTGTTGAAGACAATGACTTATCTGATGAGCAAAAAGCAAGAATATCCAAGAAGCTGGGTGAAGCTGATAAGTGCTTAGTTGACGGTGCTGATGAATACTTACAACTTCTTGATGTGGTCAGCAATACAATGAAAGCTTTTAGCAACATGCCAGAAACATTTGCTTACAAATTCAGTGTAGGTGTTCTTGGATTTCTTGTTTGGGCTCATCATATGTTTACTGTGGGCTTAGACGTGGATACCAGTGCCTACTTCACTGCAGCTACCATGATCATAGCTGTCCCAACTGGAATTAAAATCTTTAGTTGGTTCGACAAAATCAGATTTGGTGTACGTTTTTAG
>Glyma.04g246800.1.p sequence-type=predicted peptide transcript=Glyma.04g246800.1 locus=Glyma.04g246800 ID=Glyma.04g246800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAPILQSTQPWVEKYRPKQVKDVAHQDEVVRCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQRKSGYPCPPFKIIVLDEADSMTEDAQFYDFTPSTTAVQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRILYISQEEGLCLDAEALSTLSSISHGDLRRAITYLQSAARLFGSSISSENLISVSGVVPAKVVEELLKACKSGNFDLANKEVNNFIAEGYPASQMLTQLFESIVEDNDLSDEQKARISKKLGEADKCLVDGADEYLQLLDVVSNTMKAFSNMPETFAYKFSVGVLGFLVWAHHMFTVGLDVDTSAYFTAATMIIAVPTGIKIFSWFDKIRFGVRF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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