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Report for Sequence Feature Glyma.04g245100

Feature Type:gene_model
Chromosome:Gm04
Start:51257284
stop:51265241
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g245100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G52560.1AT UDP-sugar pyrophosphorylase JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0009226GO-bp nucleotide-sugar biosynthetic process EnsemblGenomesN/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016779GO-mf nucleotidyltransferase activity EnsemblGenomesN/AIEA
GO:0016779GO-mf nucleotidyltransferase activity JGI N/AIEA
GO:0051748GO-mf UTP-monosaccharide-1-phosphate uridylyltransferase activity EnsemblGenomesN/AIEA
GO:0070569GO-mf uridylyltransferase activity EnsemblGenomesN/AIEA
KOG2388 KOG UDP-N-acetylglucosamine pyrophosphorylase JGI N/AIEA
PTHR11952Panther UDP- GLUCOSE PYROPHOSPHORYLASE JGI N/AIEA
PTHR11952:SF2Panther LD24639P JGI N/AIEA
PF01704PFAM UTP--glucose-1-phosphate uridylyltransferase JGI N/AIEA
PWY-3801SoyCyc9 sucrose degradation II (sucrose synthase) Plant Metabolic Network ISS
PWY-3821SoyCyc9 D-galactose detoxification Plant Metabolic Network ISS
PWY-4841SoyCyc9 UDP-α-D-glucuronate biosynthesis (from myo-inositol) Plant Metabolic Network ISS
PWY-6527SoyCyc9 stachyose degradation Plant Metabolic Network ISS
PWY-7238SoyCyc9 sucrose biosynthesis II Plant Metabolic Network ISS
PWY-7343SoyCyc9 UDP-α-D-glucose biosynthesis I Plant Metabolic Network ISS
PWY-7345SoyCyc9 superpathway of anaerobic sucrose degradation Plant Metabolic Network ISS
PWY-82SoyCyc9 UDP-β-L-arabinose biosynthesis II (from β-L-arabinose) Plant Metabolic Network ISS
PWYQT-4466SoyCyc9 superpathway of sucrose and starch metabolism I (non-photosynthetic tissue) Plant Metabolic Network ISS
SUCSYN-PWYSoyCyc9 sucrose biosynthesis I (from photosynthesis) Plant Metabolic Network ISS
UDPNACETYLGALSYN-PWYSoyCyc9 UDP-N-acetyl-D-glucosamine biosynthesis II Plant Metabolic Network ISS
GN7V-58655SoyCyc9-rxn aldose-1-phosphate nucleotidyltransferase Plant Metabolic Network ISS

Proteins Associated with Glyma.04g245100
LocusGene SymbolProtein Name
USP1 UDP-sugar pyrophosphorylase

Expression Patterns of Glyma.04g245100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g245100
ParalogEvidenceComments
Glyma.06g118100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g245100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g42370 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g245100
>Glyma.04g245100.1 sequence-type=CDS polypeptide=Glyma.04g245100.1.p locus=Glyma.04g245100 ID=Glyma.04g245100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACAAACAAAAGAATTTGCATTTATTTTCATGTTAGTTCTTCCGTCTTCTCACCACCACCTTCCACTTCCACTCTCTTCTCCATCGATCCCATTTCCATGGCTTCCTCCCTCGGCGACAACTTCAACCTTCTCTCGCCTCAACAGCAAGAGCTGGTGAAGATGCTATTGGATAACGGCCAAGAGCACCTGTTTCGCGATTGGCCTGCTCCCGGCGTTGACGACGACCACAAAAATGCGTTCTTCGACCAGCTGACTCGACTAGATTCGAGTTACCCTGGCGGTCTGGAAGCATACATCACAAATGCTAAACGGCTCTTGGCTGATTCTAAGGCTGGCAGAAACCCTTTCGATGGCTTCACACCTTCCGTTCCAACGGGTGAGACTTTGGCGTTTGGTGATGAGAACTACATCAAATTTGAGGAAGCAGGTGTACTTGAAGCTCGGAAAGCTGCGTTTGTTCTTGTTGCCGGTGGTCTTGGCGAGCGTTTAGGATACAGTGGGATTAAGCTTGCGCTTCCTGCAGAAACCACTACCAGAACATGTTTCGTACAGAATTACATTGAATCTATATTGGCTCTTCAAGAAGCCAGCTCGCAAGGTGAATCCCAGACACAGATTCCTCTTGTTATTATGACTTCTGATGATACCCATGGACGTACTTTAGAGCTATTAGAATCAAATTCTTATTTTGGTATGCAACCCACGCAAGTAACACTTTTAAAGCAGGAAAAAGTTGCATGCTTAGAAGATAATGATGCCAGGCTTGCATTGGAACCACAAAACAAGTACAAAATTCAGACAAAACCTCATGGACATGGTGATGTGCATGCGCTTCTTTATTCAAGTGGCATTCTGAAAGTATGGTATGAAGCTGGGTTGAAATGGGTTCTATTTTTTCAAGATACAAATGGGCTTCTCTTCAAGGCAATTCCATCAGCACTGGGCGTCAGTGCTGCCAAACAGTACCATGTTAACTCTCTTGCAGTACCTCGAAAAGCAAAAGAAGCTATTGGTGGAATTACCAGACTCACTCACTCTGATGGGAGGTCTATGGTGATAAATGTGGAATACAATCAGCTAGATCCTCTTCTTAGAGCAAGTGGATACCCTGACGGCGACGTAGATTGTGAGACTGGCTACTCCCCATTTCCAGGAAATATTAACCAATTGATTTTAGAACTTGGTCATTACATTGAAGAGCTCTCAAAAACAGGAGGTGCCATTCAGGAGTTTGTTAACCCAAAATATAAAGATGCCAGCAAAACTTCATTTAAGTCCTCAACTCGACTTGAATGTATGATGCAAGACTATCCAAAAACATTGCCCCCATCTGCCAGGGTTGGATTCACGGTGATGGAAACGTGGCTTGCTTATGCACCTGTGAAGAATAATGCCGAGGATGCTGCCAAGGTGCCGAAAGGAAATCCATACCATAGTGCAACTTCTGGAGAAATGGCCATCTATCGTGCAAATAGCATTATTCTCAGAAAGGCTGGTGTCCAAGTAGCAGATCCAGTAGTGCAGGTCTTCAATGGGCAAGAGGTTGAAGTTTGGCCTCGTATCACATGGAAGCCAAAATGGGGTCTGACTTTTAATCGAATCAAGAGCAAAGTCAGTGGAAATTGCTCCATTTCCCTAAGGTCAACTCTGGCCATTAAGGGTCCAAATATTTTTATTGAAAATCTGTCCGTAGATGGGGCTCTAATCATTGATGCTGTGGATGATGCAGAGGTAAATGTGAGTGGTTCAGTTCAAAACAATGGTTGGGTCCTTGAGACCGTTGACTACAAAGATGCCTCGGAGCCTGAGGTATTGAGAATCCGGGGTTTTAAATTTAACAAAATTGAGCAGCTGGAAACGAAATACTCTGAGCCTGGCAAATTTCACTTGAAGGCTTGA
Predicted protein sequences of Glyma.04g245100
>Glyma.04g245100.1.p sequence-type=predicted peptide transcript=Glyma.04g245100.1 locus=Glyma.04g245100 ID=Glyma.04g245100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTNKRICIYFHVSSSVFSPPPSTSTLFSIDPISMASSLGDNFNLLSPQQQELVKMLLDNGQEHLFRDWPAPGVDDDHKNAFFDQLTRLDSSYPGGLEAYITNAKRLLADSKAGRNPFDGFTPSVPTGETLAFGDENYIKFEEAGVLEARKAAFVLVAGGLGERLGYSGIKLALPAETTTRTCFVQNYIESILALQEASSQGESQTQIPLVIMTSDDTHGRTLELLESNSYFGMQPTQVTLLKQEKVACLEDNDARLALEPQNKYKIQTKPHGHGDVHALLYSSGILKVWYEAGLKWVLFFQDTNGLLFKAIPSALGVSAAKQYHVNSLAVPRKAKEAIGGITRLTHSDGRSMVINVEYNQLDPLLRASGYPDGDVDCETGYSPFPGNINQLILELGHYIEELSKTGGAIQEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSARVGFTVMETWLAYAPVKNNAEDAAKVPKGNPYHSATSGEMAIYRANSIILRKAGVQVADPVVQVFNGQEVEVWPRITWKPKWGLTFNRIKSKVSGNCSISLRSTLAIKGPNIFIENLSVDGALIIDAVDDAEVNVSGSVQNNGWVLETVDYKDASEPEVLRIRGFKFNKIEQLETKYSEPGKFHLKA*






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