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Report for Sequence Feature Glyma.04g243600

Feature Type:gene_model
Chromosome:Gm04
Start:51151387
stop:51158847
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g243600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G21380.1AT Target of Myb protein 1 JGI N/AIEA
GO:0006886GO-bp intracellular protein transport EnsemblGenomesN/AIEA
GO:0006886GO-bp intracellular protein transport JGI N/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
KOG1087 KOG Cytosolic sorting protein GGA2/TOM1 JGI N/AIEA
PTHR13856Panther VHS DOMAIN CONTAINING PROTEIN FAMILY JGI N/AIEA
PTHR13856:SF3Panther JGI N/AIEA
PF00790PFAM VHS domain JGI N/AIEA
PF03127PFAM GAT domain JGI N/AIEA

Expression Patterns of Glyma.04g243600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g243600 not represented in the dataset
Glyma.04g243600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g243600
ParalogEvidenceComments
Glyma.06g119700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g243600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g42246 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g243600
>Glyma.04g243600.1 sequence-type=CDS polypeptide=Glyma.04g243600.1.p locus=Glyma.04g243600 ID=Glyma.04g243600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTAACAACGCAGCTGCTTGTGCTGAGAGAGCAACTAGTGACATGCTCATTGGTCCTGACTGGGCAATCAACATAGAGTTGTGTGATATCATTAATATGGACCCTGGGCAAGCAAAGGATGCTTTGAAGATACTCAAGAAGCGTTTGGCCAGTAAAAATCCAAAAATACAGCTTCTGGCTCTTTTTGTATTGGAGACTCTTAGTAAGAATTGTGGTGAAAGTGTATTTCAGCAGATCATTGAGCGGGATATCTTACATGAAATGGTTAAGATAGTGAAGAAGAAGCCGGATTTAAATGTGAGGGAAAAGATACTGATTTTAATTGATACATGGCAAGAAGCTTTTGGGGGGCCAACTGGAGTTTATCCTCAATACTATGCAGCATATAATGAATTGAAGTCTGCTGGAGTTGAATTTCCACCACGAGATGAGAATAGTGTACCATTCTTCACTCCCGCTCAAACTCAGCCAATTATTCATTCTGCTGCAGAATATGATGATGCTACTATTCAGGCTTCTCTTCAGTCAGATGCATCTGACCTTAGTTTGCTAGAGATTCAAAATGCTCAAGGACTAGCTGATGTATTGATGGAAATGCTTAGCGCCTTGAGTCCTAAAGACCGTGAGGGTGTGAAGGAGGAAGTGATTGTTGATCTTGTTGACCAGTGCCGTTCATACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTACGGATGAGCAACTTTTAGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCGAGTACTCTGTCGACATGATGACATTGTGAAAGGAACTGCTGATTCTGGTGCCAGAGAAGCAGAAACTTCAGTTCTACCACTTGTAAATGTAAACCACGAAGATGATGAATCAGAGGATGATTTTGCTCAACTAGCCCATAGGTCATCACGTGATACTCAGGCACAGAATCAAAAACCAGCCTATGACAAGGCAGAACCAGGGAGGATAAACCCACTCATTCCACCACCACCAGCATCAAAGAAGCCGGTCTACTCTGGCACCGGCATGGTTGACTATCTCAGTGGTGATACATACAAGACAGAAGGATCTCCTGAAAACTCAGAACCCACTTCATTTACAGCTCCCCTTCATTCTAGCCCTAATCCAACCTCGTCAACTATTCCATCTCTGTCTTCCTCTCATCCTCATGCTGTGAGTACTACCTCATCACCAATTTTTAGCAGCGAGCCTGTGTATGATGAACAACCATCTTCTGAGGACAAATCTTCGGAGTGTCTGCCTGCAGCTCCCTGGGATGCTCAATCTCCTGGCATCATTCCGCCCCCACCTTCAAAGTATAATCAAAGACAACAGTTTTTTGAGCAACAAGGTGTATCTCATTCAAGTAGTGGATCCAGTTCCTCTTATGACAGCTTGGTGGGACAAACTCAAAATCTCTCCCTGAATTCATCCACCCCAACCAAACAACAGAAGCCAGAAGATGCCCTTTTCAAGGATCTTGTTGATTTTGCCAAATCCAAAACCTCATCATCTTCCAAACCCAATAGGTCATATTGA
Predicted protein sequences of Glyma.04g243600
>Glyma.04g243600.1.p sequence-type=predicted peptide transcript=Glyma.04g243600.1 locus=Glyma.04g243600 ID=Glyma.04g243600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MANNAAACAERATSDMLIGPDWAINIELCDIINMDPGQAKDALKILKKRLASKNPKIQLLALFVLETLSKNCGESVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPTGVYPQYYAAYNELKSAGVEFPPRDENSVPFFTPAQTQPIIHSAAEYDDATIQASLQSDASDLSLLEIQNAQGLADVLMEMLSALSPKDREGVKEEVIVDLVDQCRSYQKRVMLLVNNTTDEQLLGQGLALNDSLQRVLCRHDDIVKGTADSGAREAETSVLPLVNVNHEDDESEDDFAQLAHRSSRDTQAQNQKPAYDKAEPGRINPLIPPPPASKKPVYSGTGMVDYLSGDTYKTEGSPENSEPTSFTAPLHSSPNPTSSTIPSLSSSHPHAVSTTSSPIFSSEPVYDEQPSSEDKSSECLPAAPWDAQSPGIIPPPPSKYNQRQQFFEQQGVSHSSSGSSSSYDSLVGQTQNLSLNSSTPTKQQKPEDALFKDLVDFAKSKTSSSSKPNRSY*






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