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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G09300.1 | AT | Thiamin diphosphate-binding fold (THDP-binding) superfamily protein | JGI | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:0016114 | GO-bp | terpenoid biosynthetic process | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0008661 | GO-mf | 1-deoxy-D-xylulose-5-phosphate synthase activity | JGI | N/A | IEA |
| GO:0016624 | GO-mf | oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor | EnsemblGenomes | N/A | IEA |
| GO:0016624 | GO-mf | oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor | JGI | N/A | IEA |
| KOG1182 | KOG | Branched chain alpha-keto acid dehydrogenase complex, alpha subunit | JGI | N/A | IEA |
| PTHR11516 | Panther | PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT (BACTERIAL AND ORGANELLAR) | JGI | N/A | IEA |
| PTHR11516:SF1 | Panther | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL | JGI | N/A | IEA |
| PF00676 | PFAM | Dehydrogenase E1 component | JGI | N/A | IEA |
| ILEUDEG-PWY | SoyCyc9 | L-isoleucine degradation I | Plant Metabolic Network | ISS | |
| LEU-DEG2-PWY | SoyCyc9 | L-leucine degradation I | Plant Metabolic Network | ISS | |
| PWY-5046 | SoyCyc9 | 2-oxoisovalerate decarboxylation to isobutanoyl-CoA | Plant Metabolic Network | ISS | |
| VALDEG-PWY | SoyCyc9 | L-valine degradation I | Plant Metabolic Network | ISS | |
| GN7V-54381 | SoyCyc9-rxn | (S)-3-methyl-2-oxopentanoate dehydrogenase (acylating) | Plant Metabolic Network | ISS |
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Glyma.04g243000 not represented in the dataset |
Glyma.04g243000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.06g120300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma04g42190 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.04g243000.1 sequence-type=CDS polypeptide=Glyma.04g243000.1.p locus=Glyma.04g243000 ID=Glyma.04g243000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGACATCCTGGTTATTGGGAAGGTCTAGTAGGATCTTAATTCATCAACAACAACAGCTTCACAAGGGACCATTTCTTAACTATAATAGCTCTTGTTCCTCTTTTCGATCAACTGAGCCATTTAGGTGCCGTGATGCATTACCGGGTAAGAACTCGTCACCTACCCTTTTCCGCTTTTGGCGTCATGAATCAACCAAAGCTGAGGCACAATTGGAATTGGAGCAAGATGTCACCGAGGATGACCCTAAACAGATAATTGATTTTCCTGGAGGGAAAGTTGGATTTACTTCTGAAATGAGATTCATTTCTGAGTCTCCTCAGAAAAGGGTGCCCTGTTATCGTGTTCTTGATGGCAATGGTGAGATCCTTAAATACAGCGACTATGTACAGGTTGGCAAGGAAATGGGTGTGAAGATGTATTCTGACATGGTCACTCTTCAAACTATGGACAGCATATTCTATGAAGTGCAGAGGCAAGGTAGAATTTCCTTCTACCTCACCCAAATGGGGGAAGAAGCAGTTAACATTGCATCTGCTGCTGCACTTTCTCCTGATGACATCATATTGCCTCAGTACCGAGAGCCTGGAGTTCTATTGTGGCGTGGTTTTACACTGCAGCAATTTGTTCATCAGTGCTTTGGAAACACACATGATTTTGGAAAAGGCAGGCAGATGCCTATACATTATGGTTCTAACAAGCACAATTACTTCACAGTGTCATCCCCCATTGCAACACAACTTCCTCAAGCTGTGGGGGCTGCTTATTCCCTTAAAATGGATGGGAAAAGTGCATGTGCAGTCACTTTTTGTGGGGATGGTGCCACCAGTGAGGGAGATTTTCATGCTGCTATGAATTTTGCAGCAGTCATGGAGGCCCCTGTTGTTTTTATCTGTCGTAATAATGGATGGGCCATCAGTACACCTGTAGAAGACCAATTTCGAAGCGATGGTATTGTAGTTAAAGGTAAAGCTTATGGCATCTGGAGTATCAGAGTAGATGGAAATGATGCTCTTGCTGTTTATAGTGCAGTACACACTGCTAGAGAAATCGCTATAAGAGAAAAAAGGCCTGTTTTAATTGAGGCTCTCACTTATAGAGTAGGACATCACTCTACATCTGATGATTCAACTAAGTACCGGGGAACCGGTGAGATTGAATATTGGAAGACGGCAAGGAATCCTGTGAATCGATTCAAAAGATGGGTAGAAAGGAATGATTGGTGGAGTGACAAGGATGAATTGGAGCTTAGAAGCAGTGTTAGGAAGCAGTTAATGCATGCGATTCAGGTGGCAGAGAAAGCACAAAAACCTCCACTTGAGGACTTATTTAGTGATGTCTATGATCAATTGCCATCAAACCTTCAGGAGCAAGAGAGACTACTTAGAAAGACCATCCAGAAGCATCCCAAAGACTACCCTTCTGATGTTCCTTTGTAG
>Glyma.04g243000.1.p sequence-type=predicted peptide transcript=Glyma.04g243000.1 locus=Glyma.04g243000 ID=Glyma.04g243000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MTSWLLGRSSRILIHQQQQLHKGPFLNYNSSCSSFRSTEPFRCRDALPGKNSSPTLFRFWRHESTKAEAQLELEQDVTEDDPKQIIDFPGGKVGFTSEMRFISESPQKRVPCYRVLDGNGEILKYSDYVQVGKEMGVKMYSDMVTLQTMDSIFYEVQRQGRISFYLTQMGEEAVNIASAAALSPDDIILPQYREPGVLLWRGFTLQQFVHQCFGNTHDFGKGRQMPIHYGSNKHNYFTVSSPIATQLPQAVGAAYSLKMDGKSACAVTFCGDGATSEGDFHAAMNFAAVMEAPVVFICRNNGWAISTPVEDQFRSDGIVVKGKAYGIWSIRVDGNDALAVYSAVHTAREIAIREKRPVLIEALTYRVGHHSTSDDSTKYRGTGEIEYWKTARNPVNRFKRWVERNDWWSDKDELELRSSVRKQLMHAIQVAEKAQKPPLEDLFSDVYDQLPSNLQEQERLLRKTIQKHPKDYPSDVPL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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