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Report for Sequence Feature Glyma.04g240800

Feature Type:gene_model
Chromosome:Gm04
Start:50907553
stop:50910551
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g240800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G77120.1AT alcohol dehydrogenase 1 JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG0022 KOG Alcohol dehydrogenase, class III JGI N/AIEA
PTHR11695Panther ALCOHOL DEHYDROGENASE RELATED JGI N/AIEA
PTHR11695:SF4Panther JGI N/AIEA
PF00107PFAM Zinc-binding dehydrogenase JGI N/AIEA
PF08240PFAM Alcohol dehydrogenase GroES-like domain JGI N/AIEA
PWY-5486SoyCyc9 pyruvate fermentation to ethanol II Plant Metabolic Network ISS
PWY-6333SoyCyc9 acetaldehyde biosynthesis I Plant Metabolic Network ISS
PWY-7345SoyCyc9 superpathway of anaerobic sucrose degradation Plant Metabolic Network ISS
PWY66-21SoyCyc9 ethanol degradation II Plant Metabolic Network ISS
GN7V-50275SoyCyc9-rxn alcohol dehydrogenase Plant Metabolic Network ISS

Proteins Associated with Glyma.04g240800
LocusGene SymbolProtein Name
ADH2 ADH2 Alcohol dehydrogenase 2 gene
ADH2 alcohol dehydrogenase family protein

Expression Patterns of Glyma.04g240800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g240800
ParalogEvidenceComments
Glyma.06g122600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g240800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g41990 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g240800
>Glyma.04g240800.1 sequence-type=CDS polypeptide=Glyma.04g240800.1.p locus=Glyma.04g240800 ID=Glyma.04g240800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGAGCACAGCTGGCCAAGTCATCAAATGCAAAGCTGCGGTTTCATGGGAGGCAGGGAAGCCACTTGTGATTGAAGAAGTAGAGGTTGCGCCACCACAAGCTGGTGAAGTGCGTTTGAAGATCCTCTACACCTCTCTTTGCCACACTGATGTTTACTTCTGGGAAGCTAAGGGCCAAACTCCATTGTTTCCTCGTATATTTGGTCATGAAGCTGGAGGGATTGTGGAGAGCGTAGGTGAGGGTGTGACTCATCTGAAACCAGGGGACCATGCCCTCCCTGTGTTTACCGGGGAGTGTGGGGACTGCCCTCATTGCAAGTCAGAGGAGAGCAACATGTGTGATCTTCTCAGGATCAACACTGATAGGGGTGTCATGATCCATGATAGCCAAACAAGGTTTTCTATAAAGGGACAACCTATTTACCATTTTGTTGGTACCTCTACATTCAGTGAATACACTGTTGTTCATGCTGGATGTGTTGCCAAAGTCAACCCTGCTGCCCCACTTGACAAAATCTGTGTTCTCAGTTGTGGAATTTGCACAGGTCTTGGGGCCACTATCAATGTTGCAAAACCAAAACCTGGTTCTTCTGTTGCCATTTTTGGACTTGGAGCTGTTGGCCTTGCCGCTGCTGAAGGGGCAAGGATTTCTGGTGCATCAAGAATCATTGGGGTTGATTTAGTTTCTAGCAGATTTGAAGAAGCTAAGAAGTTTGGGGTCAATGAATTTGTGAACCCAAAAGATCATGACAAACCTGTACAAGAGGTGATTGCTGCAATGACAAATGGGGGTGTGGATCGTGCTGTTGAATGTACTGGCAGCATCCAAGCCATGATCTCAGCATTCGAATGCGTCCACGATGGTTGGGGTGTTGCTGTACTTGTTGGAGTGCCAAACAAAGATGATGCATTCAAAACTCATCCAGTGAATTTCTTGAATGAGAGGACTCTAAAGGGTACCTTCTATGGAAACTACAAACCCCGCACTGACCTTCCTTCTGTTGTGGAGAAGTACATGAATGGGGAATTGGAACTGGAGAAATTCATCACTCACACAGTTCCATTCTCTGAGATTAACAAGGCTTTTGATTACATGCTGAAAGGGGAGTCCATCAGATGCATCATTCGTATGGGGGAGTAA
Predicted protein sequences of Glyma.04g240800
>Glyma.04g240800.1.p sequence-type=predicted peptide transcript=Glyma.04g240800.1 locus=Glyma.04g240800 ID=Glyma.04g240800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSTAGQVIKCKAAVSWEAGKPLVIEEVEVAPPQAGEVRLKILYTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGDCPHCKSEESNMCDLLRINTDRGVMIHDSQTRFSIKGQPIYHFVGTSTFSEYTVVHAGCVAKVNPAAPLDKICVLSCGICTGLGATINVAKPKPGSSVAIFGLGAVGLAAAEGARISGASRIIGVDLVSSRFEEAKKFGVNEFVNPKDHDKPVQEVIAAMTNGGVDRAVECTGSIQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPVNFLNERTLKGTFYGNYKPRTDLPSVVEKYMNGELELEKFITHTVPFSEINKAFDYMLKGESIRCIIRMGE*






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