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Report for Sequence Feature Glyma.04g240600

Feature Type:gene_model
Chromosome:Gm04
Start:50888492
stop:50892907
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g240600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G42240.1AT serine carboxypeptidase-like 42 JGI N/AIEA
GO:0006508GO-bp proteolysis EnsemblGenomesN/AIEA
GO:0006508GO-bp proteolysis JGI N/AIEA
GO:0051603GO-bp proteolysis involved in cellular protein catabolic process EnsemblGenomesN/AIEA
GO:0004180GO-mf carboxypeptidase activity EnsemblGenomesN/AIEA
GO:0004185GO-mf serine-type carboxypeptidase activity EnsemblGenomesN/AIEA
GO:0004185GO-mf serine-type carboxypeptidase activity JGI N/AIEA
GO:0008233GO-mf peptidase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
KOG1282 KOG Serine carboxypeptidases (lysosomal cathepsin A) JGI N/AIEA
PTHR11802Panther SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE JGI N/AIEA
PTHR11802:SF8Panther SERINE CARBOXYPEPTIDASE-LIKE 20-RELATED JGI N/AIEA
PF00450PFAM Serine carboxypeptidase JGI N/AIEA

Expression Patterns of Glyma.04g240600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g240600
ParalogEvidenceComments
Glyma.06g122800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g240600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g41970 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g240600
>Glyma.04g240600.2 sequence-type=transcript locus=Glyma.04g240600 ID=Glyma.04g240600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCGGGATTCACGTGCTTCTTTCCTCCCATTAACAGAATCTGTTCAGTTAAAGGATGGGACCAAATTCAGAACAAGGTTAGTGACTGATAGAGATCATCAAATAGTAATTAAAAATATATTTGAACCAGTATATAAGAATCAAGGATCCCTGAGGGAATGGATAAAAAGGTTGGGTTTCTTGTGAGTTGTGACCGGTGTGGGACTTGGAGTTGTTGAGATGAAAAGGTGTTGGTTGGTTGGGGTCTTGATTGTGGTGGGGTGTGCCTGCATGATGGGCACAGTTGGAGTAGAAGGGTACCCTGATGAGGATCTCATAGTAAGTTTACCTGGCCAACCCAAAGTTGGGTTCAAGCAATATGCAGGGTATGTTGATATTGATGTCAAGCATGGGAGAAGCCTTTTCTACTATTTTGTGGAGGCTGAGAATGGCCCTGATAAGAAGCCCCTCACTCTTTGGCTCAATGGAGGCCCGGGATGTTCCTCCATTGGAGGAGGTGCTTTCACTGAGTTGGGTCCCTTTTATCCCAAAGGTGATGGACGTGGTCTCCGAAGAAATTCAATGTCTTGGAATAGAGCATCCAACCTTCTCTTTGTGGAGTCCCCAGCTGGAGTTGGGTGGTCATATTCAAACAAAACTTCAGATTACAACTCTGGAGACTCCTCCACCGCCACTGATATGCTTCTGTTCTTGCGGAAATGGTACGAGAAGTTTCCTTCCTACAGATCAAGGGAGTTGTTCCTTACTGGAGAAAGCTATGCAGGACATTATATACCACAGTTAGCTAATGTTCTTTTGGACTACAATGCTCATTCAACTGGTTTCAAATTCAATATTAAAGGAGTTGCTATTGGAAACCCACTTCTGAAACTTGATCGTGATGCACAAGCAACATATGAATACTTCTGGTCACATGGAATGATTTCAGATGAAATTGGCCTAGCCATTACGAATGATTGCGATTTTGATGATTATGTCTTTGCAAGTACACATAATGTATCTAAATCATGCAATGAAGCAATAAATGAAGCAAATGAAATTGTTGGCGATTACATAAACAACTATGATGTGATTCTGGATGTGTGTTATCCATCCATAGTTGAACAAGAGCTGAGATTGAAAAAAATGGCTACTAAAATAAGCATAGGTGTAGATGTTTGTATGACTTATGAAAGAAGTTTTTATTTCAACCTCCCTGAGGTTCAGAAGGCTCTCCATGCAAACCGTACCAATCTTCCGTATCAATGGTCCATGTGCAGTGGGGTCTTAAATTATAGCGACACTGATCCTAACATAGATATCCTTCCAGTTCTTAAAAAGATTGTTCAAAACCATATTCCAGTATGGGTTTTCAGTGGAGACCAAGATTCTGTTGTGCCATTACTAGGTTCTCGAACACTAATTCGTGAACTAGCTCATGATCTAAAGTTCAAGATAACAGTCCCATATGGAGCTTGGTTCCACAAAGGCCAGGTTGGAGGTTGGGTAACCGAGTATGGAAATTTGTTGACTTTTGCCACTGTAAGAGGAGCTGCTCACATGGTACCCTATGCACAACCTTCAAGAGCACTCCATCTCTTTAGTTCATTTGTGCTTAGAAAAAGATTGCCAAACACAACACACCCTTCAATTGATGATTAATAGTATAACTAAGAAGAAGATGGATCTGCCAGCCATATACATAACAAGTGGAAATAGCAGCTTCTACACTCTAGCTAGTTGATTCTTAGATCTCAAGACTTTAGAGGAAGCAGTGAAAGAGAAGGGAGTCTCTAATTATAGGCTATTATTTATCAATTAATGTATGGAAAAGAGAGGGAAGTAAGTAAAAGGAATAAAAAAAAGAGGAGATATTCCATTCTTGGAGCCTATTGATTCCCAAGTTGCATTGCATGTTCTACATTCTTTATTTTGGAAGCACAGGCTCGTGCTTTATTCCTGATTGTACAGGAAAAAATATACAACGTAATTTT

>Glyma.04g240600.3 sequence-type=transcript locus=Glyma.04g240600 ID=Glyma.04g240600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGTTGTGTTGTCCTACTCAGAAAATCCTATTTGCTTGGACCTCTCAGTGACATCCTCTGGATCAAAACTTCAAAACAACTCTGGCCCGGGATGTTCCTCCATTGGAGGAGGTGCTTTCACTGAGTTGGGTCCCTTTTATCCCAAAGGTGATGGACGTGGTCTCCGAAGAAATTCAATGTCTTGGAATAGAGCATCCAACCTTCTCTTTGTGGAGTCCCCAGCTGGAGTTGGGTGGTCATATTCAAACAAAACTTCAGATTACAACTCTGGAGACTCCTCCACCGCCACTGATATGCTTCTGTTCTTGCGGAAATGGTACGAGAAGTTTCCTTCCTACAGATCAAGGGAGTTGTTCCTTACTGGAGAAAGCTATGCAGGACATTATATACCACAGTTAGCTAATGTTCTTTTGGACTACAATGCTCATTCAACTGGTTTCAAATTCAATATTAAAGGAGTTGCTATTGGAAACCCACTTCTGAAACTTGATCGTGATGCACAAGCAACATATGAATACTTCTGGTCACATGGAATGATTTCAGATGAAATTGGCCTAGCCATTACGAATGATTGCGATTTTGATGATTATGTCTTTGCAAGTACACATAATGTATCTAAATCATGCAATGAAGCAATAAATGAAGCAAATGAAATTGTTGGCGATTACATAAACAACTATGATGTGATTCTGGATGTGTGTTATCCATCCATAGTTGAACAAGAGCTGAGATTGAAAAAAATGGCTACTAAAATAAGCATAGGTGTAGATGTTTGTATGACTTATGAAAGAAGTTTTTATTTCAACCTCCCTGAGGTTCAGAAGGCTCTCCATGCAAACCGTACCAATCTTCCGTATCAATGGTCCATGTGCAGTGGGGTCTTAAATTATAGCGACACTGATCCTAACATAGATATCCTTCCAGTTCTTAAAAAGATTGTTCAAAACCATATTCCAGTATGGGTTTTCAGTGGAGACCAAGATTCTGTTGTGCCATTACTAGGTTCTCGAACACTAATTCGTGAACTAGCTCATGATCTAAAGTTCAAGATAACAGTCCCATATGGAGCTTGGTTCCACAAAGGCCAGGTTGGAGGTTGGGTAACCGAGTATGGAAATTTGTTGACTTTTGCCACTGTAAGAGGAGCTGCTCACATGGTACCCTATGCACAACCTTCAAGAGCACTCCATCTCTTTAGTTCATTTGTGCTTAGAAAAAGATTGCCAAACACAACACACCCTTCAATTGATGATTAATAGTATAACTAAGAAGAAGATGGATCTGCCAGCCATATACATAACAAGTGGAAATAGCAGCTTCTACACTCTAGCTAGTTGATTCTTAGATCTCAAGACTTTAGAGGAAGCAGTGAAAGAGAAGGGAGTCTCTAATTATAGGCTATTATTTATCAATTAATGTATGGAAAAGAGAGGGAAGTAAGTAAAAGGAATAAAAAAAAGAGGAGATATTCCATTCTTGGAGCCTATTGATTCCCAAGTTGCATTGCATGTTCTACATTCTTTATTTTGGAAGCACAGGCTCGTGCTTTATTCCTGATTGTACAGGAAAAAATATACAACGTAATTTT
Coding sequences of Glyma.04g240600
>Glyma.04g240600.1 sequence-type=CDS polypeptide=Glyma.04g240600.1.p locus=Glyma.04g240600 ID=Glyma.04g240600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAAAGGTGTTGGTTGGTTGGGGTCTTGATTGTGGTGGGGTGTGCCTGCATGATGGGCACAGTTGGAGTAGAAGGGTACCCTGATGAGGATCTCATAGTAAGTTTACCTGGCCAACCCAAAGTTGGGTTCAAGCAATATGCAGGGTATGTTGATATTGATGTCAAGCATGGGAGAAGCCTTTTCTACTATTTTGTGGAGGCTGAGAATGGCCCTGATAAGAAGCCCCTCACTCTTTGGCTCAATGGAGGCCCGGGATGTTCCTCCATTGGAGGAGGTGCTTTCACTGAGTTGGGTCCCTTTTATCCCAAAGGTGATGGACGTGGTCTCCGAAGAAATTCAATGTCTTGGAATAGAGCATCCAACCTTCTCTTTGTGGAGTCCCCAGCTGGAGTTGGGTGGTCATATTCAAACAAAACTTCAGATTACAACTCTGGAGACTCCTCCACCGCCACTGATATGCTTCTGTTCTTGCGGAAATGGTACGAGAAGTTTCCTTCCTACAGATCAAGGGAGTTGTTCCTTACTGGAGAAAGCTATGCAGGACATTATATACCACAGTTAGCTAATGTTCTTTTGGACTACAATGCTCATTCAACTGGTTTCAAATTCAATATTAAAGGAGTTGCTATTGGAAACCCACTTCTGAAACTTGATCGTGATGCACAAGCAACATATGAATACTTCTGGTCACATGGAATGATTTCAGATGAAATTGGCCTAGCCATTACGAATGATTGCGATTTTGATGATTATGTCTTTGCAAGTACACATAATGTATCTAAATCATGCAATGAAGCAATAAATGAAGCAAATGAAATTGTTGGCGATTACATAAACAACTATGATGTGATTCTGGATGTGTGTTATCCATCCATAGTTGAACAAGAGCTGAGATTGAAAAAAATGGCTACTAAAATAAGCATAGGTGTAGATGTTTGTATGACTTATGAAAGAAGTTTTTATTTCAACCTCCCTGAGGTTCAGAAGGCTCTCCATGCAAACCGTACCAATCTTCCGTATCAATGGTCCATGTGCAGTGGGGTCTTAAATTATAGCGACACTGATCCTAACATAGATATCCTTCCAGTTCTTAAAAAGATTGTTCAAAACCATATTCCAGTATGGGTTTTCAGTGGAGACCAAGATTCTGTTGTGCCATTACTAGGTTCTCGAACACTAATTCGTGAACTAGCTCATGATCTAAAGTTCAAGATAACAGTCCCATATGGAGCTTGGTTCCACAAAGGCCAGGTTGGAGGTTGGGTAACCGAGTATGGAAATTTGTTGACTTTTGCCACTGTAAGAGGAGCTGCTCACATGGTACCCTATGCACAACCTTCAAGAGCACTCCATCTCTTTAGTTCATTTGTGCTTAGAAAAAGATTGCCAAACACAACACACCCTTCAATTGATGATTAA

>Glyma.04g240600.2 sequence-type=CDS polypeptide=Glyma.04g240600.2.p locus=Glyma.04g240600 ID=Glyma.04g240600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAAAGGTGTTGGTTGGTTGGGGTCTTGATTGTGGTGGGGTGTGCCTGCATGATGGGCACAGTTGGAGTAGAAGGGTACCCTGATGAGGATCTCATAGTAAGTTTACCTGGCCAACCCAAAGTTGGGTTCAAGCAATATGCAGGGTATGTTGATATTGATGTCAAGCATGGGAGAAGCCTTTTCTACTATTTTGTGGAGGCTGAGAATGGCCCTGATAAGAAGCCCCTCACTCTTTGGCTCAATGGAGGCCCGGGATGTTCCTCCATTGGAGGAGGTGCTTTCACTGAGTTGGGTCCCTTTTATCCCAAAGGTGATGGACGTGGTCTCCGAAGAAATTCAATGTCTTGGAATAGAGCATCCAACCTTCTCTTTGTGGAGTCCCCAGCTGGAGTTGGGTGGTCATATTCAAACAAAACTTCAGATTACAACTCTGGAGACTCCTCCACCGCCACTGATATGCTTCTGTTCTTGCGGAAATGGTACGAGAAGTTTCCTTCCTACAGATCAAGGGAGTTGTTCCTTACTGGAGAAAGCTATGCAGGACATTATATACCACAGTTAGCTAATGTTCTTTTGGACTACAATGCTCATTCAACTGGTTTCAAATTCAATATTAAAGGAGTTGCTATTGGAAACCCACTTCTGAAACTTGATCGTGATGCACAAGCAACATATGAATACTTCTGGTCACATGGAATGATTTCAGATGAAATTGGCCTAGCCATTACGAATGATTGCGATTTTGATGATTATGTCTTTGCAAGTACACATAATGTATCTAAATCATGCAATGAAGCAATAAATGAAGCAAATGAAATTGTTGGCGATTACATAAACAACTATGATGTGATTCTGGATGTGTGTTATCCATCCATAGTTGAACAAGAGCTGAGATTGAAAAAAATGGCTACTAAAATAAGCATAGGTGTAGATGTTTGTATGACTTATGAAAGAAGTTTTTATTTCAACCTCCCTGAGGTTCAGAAGGCTCTCCATGCAAACCGTACCAATCTTCCGTATCAATGGTCCATGTGCAGTGGGGTCTTAAATTATAGCGACACTGATCCTAACATAGATATCCTTCCAGTTCTTAAAAAGATTGTTCAAAACCATATTCCAGTATGGGTTTTCAGTGGAGACCAAGATTCTGTTGTGCCATTACTAGGTTCTCGAACACTAATTCGTGAACTAGCTCATGATCTAAAGTTCAAGATAACAGTCCCATATGGAGCTTGGTTCCACAAAGGCCAGGTTGGAGGTTGGGTAACCGAGTATGGAAATTTGTTGACTTTTGCCACTGTAAGAGGAGCTGCTCACATGGTACCCTATGCACAACCTTCAAGAGCACTCCATCTCTTTAGTTCATTTGTGCTTAGAAAAAGATTGCCAAACACAACACACCCTTCAATTGATGATTAA

>Glyma.04g240600.3 sequence-type=CDS polypeptide=Glyma.04g240600.3.p locus=Glyma.04g240600 ID=Glyma.04g240600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTTGGAATAGAGCATCCAACCTTCTCTTTGTGGAGTCCCCAGCTGGAGTTGGGTGGTCATATTCAAACAAAACTTCAGATTACAACTCTGGAGACTCCTCCACCGCCACTGATATGCTTCTGTTCTTGCGGAAATGGTACGAGAAGTTTCCTTCCTACAGATCAAGGGAGTTGTTCCTTACTGGAGAAAGCTATGCAGGACATTATATACCACAGTTAGCTAATGTTCTTTTGGACTACAATGCTCATTCAACTGGTTTCAAATTCAATATTAAAGGAGTTGCTATTGGAAACCCACTTCTGAAACTTGATCGTGATGCACAAGCAACATATGAATACTTCTGGTCACATGGAATGATTTCAGATGAAATTGGCCTAGCCATTACGAATGATTGCGATTTTGATGATTATGTCTTTGCAAGTACACATAATGTATCTAAATCATGCAATGAAGCAATAAATGAAGCAAATGAAATTGTTGGCGATTACATAAACAACTATGATGTGATTCTGGATGTGTGTTATCCATCCATAGTTGAACAAGAGCTGAGATTGAAAAAAATGGCTACTAAAATAAGCATAGGTGTAGATGTTTGTATGACTTATGAAAGAAGTTTTTATTTCAACCTCCCTGAGGTTCAGAAGGCTCTCCATGCAAACCGTACCAATCTTCCGTATCAATGGTCCATGTGCAGTGGGGTCTTAAATTATAGCGACACTGATCCTAACATAGATATCCTTCCAGTTCTTAAAAAGATTGTTCAAAACCATATTCCAGTATGGGTTTTCAGTGGAGACCAAGATTCTGTTGTGCCATTACTAGGTTCTCGAACACTAATTCGTGAACTAGCTCATGATCTAAAGTTCAAGATAACAGTCCCATATGGAGCTTGGTTCCACAAAGGCCAGGTTGGAGGTTGGGTAACCGAGTATGGAAATTTGTTGACTTTTGCCACTGTAAGAGGAGCTGCTCACATGGTACCCTATGCACAACCTTCAAGAGCACTCCATCTCTTTAGTTCATTTGTGCTTAGAAAAAGATTGCCAAACACAACACACCCTTCAATTGATGATTAA
Predicted protein sequences of Glyma.04g240600
>Glyma.04g240600.1.p sequence-type=predicted peptide transcript=Glyma.04g240600.1 locus=Glyma.04g240600 ID=Glyma.04g240600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKRCWLVGVLIVVGCACMMGTVGVEGYPDEDLIVSLPGQPKVGFKQYAGYVDIDVKHGRSLFYYFVEAENGPDKKPLTLWLNGGPGCSSIGGGAFTELGPFYPKGDGRGLRRNSMSWNRASNLLFVESPAGVGWSYSNKTSDYNSGDSSTATDMLLFLRKWYEKFPSYRSRELFLTGESYAGHYIPQLANVLLDYNAHSTGFKFNIKGVAIGNPLLKLDRDAQATYEYFWSHGMISDEIGLAITNDCDFDDYVFASTHNVSKSCNEAINEANEIVGDYINNYDVILDVCYPSIVEQELRLKKMATKISIGVDVCMTYERSFYFNLPEVQKALHANRTNLPYQWSMCSGVLNYSDTDPNIDILPVLKKIVQNHIPVWVFSGDQDSVVPLLGSRTLIRELAHDLKFKITVPYGAWFHKGQVGGWVTEYGNLLTFATVRGAAHMVPYAQPSRALHLFSSFVLRKRLPNTTHPSIDD*

>Glyma.04g240600.2.p sequence-type=predicted peptide transcript=Glyma.04g240600.2 locus=Glyma.04g240600 ID=Glyma.04g240600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKRCWLVGVLIVVGCACMMGTVGVEGYPDEDLIVSLPGQPKVGFKQYAGYVDIDVKHGRSLFYYFVEAENGPDKKPLTLWLNGGPGCSSIGGGAFTELGPFYPKGDGRGLRRNSMSWNRASNLLFVESPAGVGWSYSNKTSDYNSGDSSTATDMLLFLRKWYEKFPSYRSRELFLTGESYAGHYIPQLANVLLDYNAHSTGFKFNIKGVAIGNPLLKLDRDAQATYEYFWSHGMISDEIGLAITNDCDFDDYVFASTHNVSKSCNEAINEANEIVGDYINNYDVILDVCYPSIVEQELRLKKMATKISIGVDVCMTYERSFYFNLPEVQKALHANRTNLPYQWSMCSGVLNYSDTDPNIDILPVLKKIVQNHIPVWVFSGDQDSVVPLLGSRTLIRELAHDLKFKITVPYGAWFHKGQVGGWVTEYGNLLTFATVRGAAHMVPYAQPSRALHLFSSFVLRKRLPNTTHPSIDD*

>Glyma.04g240600.3.p sequence-type=predicted peptide transcript=Glyma.04g240600.3 locus=Glyma.04g240600 ID=Glyma.04g240600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSWNRASNLLFVESPAGVGWSYSNKTSDYNSGDSSTATDMLLFLRKWYEKFPSYRSRELFLTGESYAGHYIPQLANVLLDYNAHSTGFKFNIKGVAIGNPLLKLDRDAQATYEYFWSHGMISDEIGLAITNDCDFDDYVFASTHNVSKSCNEAINEANEIVGDYINNYDVILDVCYPSIVEQELRLKKMATKISIGVDVCMTYERSFYFNLPEVQKALHANRTNLPYQWSMCSGVLNYSDTDPNIDILPVLKKIVQNHIPVWVFSGDQDSVVPLLGSRTLIRELAHDLKFKITVPYGAWFHKGQVGGWVTEYGNLLTFATVRGAAHMVPYAQPSRALHLFSSFVLRKRLPNTTHPSIDD*






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