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Report for Sequence Feature Glyma.04g240400

Feature Type:gene_model
Chromosome:Gm04
Start:50873113
stop:50880698
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g240400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G77140.1AT vacuolar protein sorting 45 JGI N/AIEA
GO:0006904GO-bp vesicle docking involved in exocytosis EnsemblGenomesN/AIEA
GO:0006904GO-bp vesicle docking involved in exocytosis JGI N/AIEA
GO:0016192GO-bp vesicle-mediated transport EnsemblGenomesN/AIEA
GO:0016192GO-bp vesicle-mediated transport JGI N/AIEA
KOG1299 KOG Vacuolar sorting protein VPS45/Stt10 (Sec1 family) JGI N/AIEA
PTHR11679Panther VESICLE PROTEIN SORTING-ASSOCIATED JGI N/AIEA
PTHR11679:SF3Panther VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 45 JGI N/AIEA
PF00995PFAM Sec1 family JGI N/AIEA

Expression Patterns of Glyma.04g240400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g240400
ParalogEvidenceComments
Glyma.06g123000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g240400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g41950 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g240400
>Glyma.04g240400.1 sequence-type=CDS polypeptide=Glyma.04g240400.1.p locus=Glyma.04g240400 ID=Glyma.04g240400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGGTCACATCCTCTGCGCGCGATTACATCAATCGCATCTTGCAGGACATCTCCGGCATGAAGGTTCTCATCCTCGATTCTCAAACGGTAGGTATTGTGAGTGTCGTGTATTCACAGTCGGAGCTTCTTCAGAAAGAAGTGTTTTTGGTAGAGTTGGTAGATTCTATTTCCAAGTCAAACGAATCAATGTCGCATCTCAAGGCTGTTTACTTCCTTCGACCTACATCGGAGAATATCCAGCTTTTGCGCCGCCAACTGGCTAGTCCTAGATTTGGAGAGTATCATCTATTTTTCTCCAACATATTGAAGGACACTCAGATTCACTTACTTGCTGATTCAGATGAACAGGAAGTTGTCCAGCAAGTTCAGGAGTTCTATGCAGATTTTGTTGCCATTGATCCGTATCATTTCACTTTGCACGTGCCTTCACATTACATATATATGCTCCCAGCTATGGTAGATCCTTCAACAGTGCAGCGCTTCTCTGATAGGGTTGTTGATGGTCTTGCAGCTCTTTTTTTGGCATTAAAACGAAGGCCAGTAATTAGGTATCAAAGGACATCTGACATTGCAAAAAGGATAGCACAGGAAGCAGCTAAATTGATGTACCAAGAGGAAAGTGGTCTTTTTGATTTTAGGCGAATGGAAGTTTCTCCACTGCTGTTAGTGATTGACAGGAGGGATGATCCTGTAACCCCACTGCTAAATCAATGGACCTATCAGGCTATGGTTCATGAATTAATAGGAATCCAAGACAACAAAGTGGACTTAAAATCCATTGGTAAATTTCCAAAGGATCAGGAGGAGGTTGTGTTATCATCAGAACAAGATTCATTTTTCAAAGCTAACATGTATGAGAATTTTGGAGATATAGGTATGAATATCAAGCGGATGGTTGATGAATTTCAGCAAGTGTCAAAAAGTAACCAGAACATCCAAACAATAGAGGACATGGCCAAATTTGTTGATAATTATCCTGAGTACAGAAAAATGCATGGAAATGTGACCAAACATGTTACTTTAGTAACTGAAATGAGCAAGATAGTTGAAGAGCGAAAACTTATGTCAGTTTCGCAAACAGAACAGGAGTTGGCTTGCAATGGAGGACAAGGAGCTGCTTTTGAGGCAGTGACAAATCTACTAAACAATGAAAGCATATCAGATGTGGACCGACTACGTCTGGTCATGCTGTATGCTTTACGATATGAGAAAGATAGCCCTGTTCAATTAATGCAGCTCTTCAACAAATTGGCTTCCAGATCTGCCAAGTACAAACCTGGGCTTGTCCAGTTTCTTCTGAAGCAAGCAGGTGTTGACAAGAGAACTGGTGATCTTTTTGGAAATCGAGATCTAATGAATATTGCCCGTAACATGGCTCGTGGTTTGAAGGGTGTTGAGAATGTTTACACCCAGCACCAGCCACTTCTGTTTCAAATCATGGAAAGCATTGTCAAAGGGAGGTTGAGAGATGTGGACTACCCATTCATTGGAAATCACTTTCAACAGGGAAGGCCACAGGATGTGATCATCTTCATTGTTGGTGGGACAACTTATGAGGAGTCACGGTCTGTTGCTTTACAAAATGCCAGCAATACCGGCATTCGTTTTATTCTTGGCGGCTCTTCTGTTCTTAATTCTAAAAGGTTTTTGAGGGACTTGGAAGAAGCTCAAAGGGTAGCTCGTTCTAGCACCACTGTCATTTGA
Predicted protein sequences of Glyma.04g240400
>Glyma.04g240400.1.p sequence-type=predicted peptide transcript=Glyma.04g240400.1 locus=Glyma.04g240400 ID=Glyma.04g240400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVVTSSARDYINRILQDISGMKVLILDSQTVGIVSVVYSQSELLQKEVFLVELVDSISKSNESMSHLKAVYFLRPTSENIQLLRRQLASPRFGEYHLFFSNILKDTQIHLLADSDEQEVVQQVQEFYADFVAIDPYHFTLHVPSHYIYMLPAMVDPSTVQRFSDRVVDGLAALFLALKRRPVIRYQRTSDIAKRIAQEAAKLMYQEESGLFDFRRMEVSPLLLVIDRRDDPVTPLLNQWTYQAMVHELIGIQDNKVDLKSIGKFPKDQEEVVLSSEQDSFFKANMYENFGDIGMNIKRMVDEFQQVSKSNQNIQTIEDMAKFVDNYPEYRKMHGNVTKHVTLVTEMSKIVEERKLMSVSQTEQELACNGGQGAAFEAVTNLLNNESISDVDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKPGLVQFLLKQAGVDKRTGDLFGNRDLMNIARNMARGLKGVENVYTQHQPLLFQIMESIVKGRLRDVDYPFIGNHFQQGRPQDVIIFIVGGTTYEESRSVALQNASNTGIRFILGGSSVLNSKRFLRDLEEAQRVARSSTTVI*






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