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Report for Sequence Feature Glyma.04g238400

Feature Type:gene_model
Chromosome:Gm04
Start:50692182
stop:50696969
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g238400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G53210.1AT basic helix-loop-helix (bHLH) DNA-binding superfamily protein JGI N/AIEA
GO:0046983GO-mf protein dimerization activity EnsemblGenomesN/AIEA
GO:0046983GO-mf protein dimerization activity JGI N/AIEA
KOG4029 KOG Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 JGI N/AIEA
PTHR11534Panther MYOGENIC FACTOR JGI N/AIEA
PTHR11534:SF7Panther JGI N/AIEA
PF00010PFAM Helix-loop-helix DNA-binding domain JGI N/AIEA

Proteins Associated with Glyma.04g238400
LocusGene SymbolProtein Name
SPCH1 transcription factor SPEECHLESS

Expression Patterns of Glyma.04g238400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g238400
ParalogEvidenceComments
Glyma.06g125500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g238400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g41710 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g238400
>Glyma.04g238400.1 sequence-type=CDS polypeptide=Glyma.04g238400.1.p locus=Glyma.04g238400 ID=Glyma.04g238400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACGATAGCTTATGCGATATTTTCGATGACAAAGAGTTTGGGAGCGAACACTTTGGTGGGGACGATCTCTTTGCCATTTTGGAGAGCCTAGAATCGGACTTCACCGACTTCCCTCCTCCCATTAACGAAGAAGCTGTTGTTGCTGCTGTCTCCAAAGACAATAACGAGGATGTCTCAAGATTGGTGTCTCAAAAGTCAACCTCTTCGAGTGCTCCACTTGATTCCGAAACTGAGCTTGAAACCTCTTCCAAAACCAAGAGGCAGAAGCTTACTCCTACTACTCCAGAGGAAGCTAACCCAGATGGACAACAAAAGATGTCTCATATTACTGTTGAACGCAACAGGAGAAAGCAAATGAATGAACACTTGACCGTGTTGAGGTCGCTTATGCCTTGCTTTTATGTCAAAAGGGGAGATCAAGCATCGATAATTGGAGGAGTGGTTGATTACATCAGCGAGTTGCAGCAGGTGCTCCAAGCCCTAGAGGCCAAGAAGCAAAGAAAAGTCTACAGCGAAGTCCTGAGCCCTAGGCTCGTTTCAAGCCCAAGGCCTTCACCACTGAGTCCTCGGAAGCCCCCTTTAAGCCCGAGACTGAACTTGCCAATTAGCCCAAGAACTCCACAACCAGGAAGCCCTTACAGGCCAAGGTTGCAGGCGCAGCAAGGCTACAACAACATCATTTCACCAACCATGTCCAACGTCTCTCTCGACCCTTCTCCCACTTCTTCTGCCAACTCCTCCATCAACGACAACATCAACGAGCTTGTTGCAAACTCCAAGTCCCCCACTGCTGACGTGGAGGTCAAGTTTTCAGGTCCTCACGTTCTTCTCAAAACGGTGTCTCAACGAATTCCAGGGCAGGCTATGAAGATTATAACGGCACTTGAAGATCTTGCGCTCGAAATCGTTCATGTCAACATTAACTGTGCTGCGGATGATACCATGCTAAACTCATTCACTATCAAGATTGGAATTGAATGCCAACTCAGTGCCGAAGAACTCGCTCAACAAATCCAGCAAACATTCTGCTAA
Predicted protein sequences of Glyma.04g238400
>Glyma.04g238400.1.p sequence-type=predicted peptide transcript=Glyma.04g238400.1 locus=Glyma.04g238400 ID=Glyma.04g238400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDDSLCDIFDDKEFGSEHFGGDDLFAILESLESDFTDFPPPINEEAVVAAVSKDNNEDVSRLVSQKSTSSSAPLDSETELETSSKTKRQKLTPTTPEEANPDGQQKMSHITVERNRRKQMNEHLTVLRSLMPCFYVKRGDQASIIGGVVDYISELQQVLQALEAKKQRKVYSEVLSPRLVSSPRPSPLSPRKPPLSPRLNLPISPRTPQPGSPYRPRLQAQQGYNNIISPTMSNVSLDPSPTSSANSSINDNINELVANSKSPTADVEVKFSGPHVLLKTVSQRIPGQAMKIITALEDLALEIVHVNINCAADDTMLNSFTIKIGIECQLSAEELAQQIQQTFC*






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