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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G53120.1 | AT | spermidine synthase 3 | JGI | N/A | IEA |
| GO:0006595 | GO-bp | polyamine metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0006596 | GO-bp | polyamine biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | JGI | N/A | IEA |
| GO:0004766 | GO-mf | spermidine synthase activity | EnsemblGenomes | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| KOG1562 | KOG | Spermidine synthase | JGI | N/A | IEA |
| PTHR11558 | Panther | SPERMIDINE/SPERMINE SYNTHASE | JGI | N/A | IEA |
| PTHR11558:SF11 | Panther | SPERMIDINE SYNTHASE | JGI | N/A | IEA |
| PF01564 | PFAM | Spermine/spermidine synthase | JGI | N/A | IEA |
| ARGSPECAT-PWY | SoyCyc9 | spermine biosynthesis | Plant Metabolic Network | ISS | |
| BSUBPOLYAMSYN-PWY | SoyCyc9 | spermidine biosynthesis I | Plant Metabolic Network | ISS | |
| POLYAMINSYN3-PWY | SoyCyc9 | superpathway of polyamine biosynthesis II | Plant Metabolic Network | ISS | |
| PWY-7528 | SoyCyc9 | L-methionine salvage cycle I (bacteria and plants) | Plant Metabolic Network | ISS | |
| GN7V-58551 | SoyCyc9-rxn | spermine synthase | Plant Metabolic Network | ISS |
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Glyma.04g237300 not represented in the dataset |
Glyma.04g237300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.06g126700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma04g41600 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.04g237300.2 sequence-type=transcript locus=Glyma.04g237300 ID=Glyma.04g237300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ggagggggTGCTTTTAAATTGAGATTCTTCTTACTTGGCCATTGTTTTTCCACTTTACTCTGCTATTTAGTCTGGTTTTAGACTGGAGCCTGCGAAGAAAAGAATAATTTATGGAGGACGGCGCAGGAAGAGGTTTGGAATGCCAGAAGACTATGGATGGGAAGGTGAGTAACAGTAATGGGCCAGAGAAGGAAATTCCTTCTTGTTGTCTGAAGGCCAAGGCTTCAATCCCCGAGTCAGAGGCAAAATTCCATTCCACTGTTGTTTCTGGGTGGTTCTCAGCTTCTCAAACTTGCTCTGGGAAATCTGGGAAAGCTGTTTATTTCAACAACCCAATGTGGCCAGGAGAAGCCCATTCAATCAAAGTAGAAAAGATCTTATACAAGGAAAAGTCGGAGTACCAGGAGGTCTTGGTTTTTGAGTCATCAACTTATGGGAAAGTGCTTGTACTTGATGGAATAGTTCAATTGACTGAGAAGGATGAATGTGCTTACCAGGAGATGATAGCTCATCTTCCCCTCTGTTCAATTCAGTCCCCCAAAACTGTTTTAGTTGTTGGTGGTGGAGATGGTGGTGTTCTCAGGGAAGTAGCCCGCCACAGCTCTGTTGAACATATTGATATTTGTGAGATAGATAAGATGGTTATTGATGTTTCTAGGAAATTTTTTCCACAGTTAGCTATTGGGTTTGAAGATTCTCGAGTACATCTGCATGTTGGTGATGCTGTTGAATTTCTTAAATCTGCTTGTGAAGGGAAGTATGATGCCATAATTGTTGATTCCTCAGATCCCGTGGGTCCTGCCCAGGAACTTGTTGAGAAACCTTTTTTTGATACAATAGCTAGGGCACTAAGGCCTGGCGGAGTTCTTTGTAATATGGCAGAAAGTATGTGGCTTCATACACACCTTATTCAAGATATGATCTCTATTTGCCGAGAAACATTCAAAGGTTCTGTATGTTATGCTTGGGCCAGTGTACCAACATATCCTAGTGGTGTGATAGGCTTTCTTCTCTGTGCAACAGAAGGGCCGCCTGTTGATTTTGTGAATCCTATCAATCCCATTGAAAAGTTGGAAGGTGCTAATGAGCACAAAAGAGAACTTCGATTCTACAATTCAGAGATGCACTCAGCTGCTTTTGCGTTGCCTGCGTTCTTGAAGAGAGAAGTGAGTGTGCTCCGTGATCTCTCCCTTCAGTAGCAATGCATGATGATTGCCTATTGTAACCCCTAAATAAGAAATTTTGACGACATGGTCATTGACAAGTGTGGGATAAATAGGAATCTGGTGTGATTAATTTTAGGTTTACCAATTATGTGTGTTGTGGAGTCTGATTAGCTAGGTTAATCTTAGTCGATTTCAGATGGCTTTCTCATATCTAGTTTACAATGCTATATTATTTAGGTTTTTTAAGCACATACTCCTAAGACGCGCATTATCAATTATTAAATAATACATGGAAAGAATTTGCGATGGGAATGTAGGTTTTTAGAAATTTGATTTCATAATGAAACTTTCTCGGCATGTATATTTTATTTTATGCATTCATCGTAA
>Glyma.04g237300.1 sequence-type=CDS polypeptide=Glyma.04g237300.1.p locus=Glyma.04g237300 ID=Glyma.04g237300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAGGACGGCGCAGGAAGAGGTTTGGAATGCCAGAAGACTATGGATGGGAAGGTGAGTAACAGTAATGGGCCAGAGAAGGAAATTCCTTCTTGTTGTCTGAAGGCCAAGGCTTCAATCCCCGAGTCAGAGGCAAAATTCCATTCCACTGTTGTTTCTGGGTGGTTCTCAGCTTCTCAAACTTGCTCTGGGAAATCTGGGAAAGCTGTTTATTTCAACAACCCAATGTGGCCAGGAGAAGCCCATTCAATCAAAGTAGAAAAGATCTTATACAAGGAAAAGTCGGAGTACCAGGAGGTCTTGGTTTTTGAGTCATCAACTTATGGGAAAGTGCTTGTACTTGATGGAATAGTTCAATTGACTGAGAAGGATGAATGTGCTTACCAGGAGATGATAGCTCATCTTCCCCTCTGTTCAATTCAGTCCCCCAAAACTGTTTTAGTTGTTGGTGGTGGAGATGGTGGTGTTCTCAGGGAAGTAGCCCGCCACAGCTCTGTTGAACATATTGATATTTGTGAGATAGATAAGATGGTTATTGATGTTTCTAGGAAATTTTTTCCACAGTTAGCTATTGGGTTTGAAGATTCTCGAGTACATCTGCATGTTGGTGATGCTGTTGAATTTCTTAAATCTGCTTGTGAAGGGAAGTATGATGCCATAATTGTTGATTCCTCAGATCCCGTGGGTCCTGCCCAGGAACTTGTTGAGAAACCTTTTTTTGATACAATAGCTAGGGCACTAAGGCCTGGCGGAGTTCTTTGTAATATGGCAGAAAGTATGTGGCTTCATACACACCTTATTCAAGATATGATCTCTATTTGCCGAGAAACATTCAAAGGTTCTGTATGTTATGCTTGGGCCAGTGTACCAACATATCCTAGTGGTGTGATAGGCTTTCTTCTCTGTGCAACAGAAGGGCCGCCTGTTGATTTTGTGAATCCTATCAATCCCATTGAAAAGTTGGAAGGTGCTAATGAGCACAAAAGAGAACTTCGATTCTACAATTCAGAGATGCACTCAGCTGCTTTTGCGTTGCCTGCGTTCTTGAAGAGAGAAGTGAGTGTGCTCCGTGATCTCTCCCTTCAGTAG >Glyma.04g237300.2 sequence-type=CDS polypeptide=Glyma.04g237300.2.p locus=Glyma.04g237300 ID=Glyma.04g237300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAGGACGGCGCAGGAAGAGGTTTGGAATGCCAGAAGACTATGGATGGGAAGGTGAGTAACAGTAATGGGCCAGAGAAGGAAATTCCTTCTTGTTGTCTGAAGGCCAAGGCTTCAATCCCCGAGTCAGAGGCAAAATTCCATTCCACTGTTGTTTCTGGGTGGTTCTCAGCTTCTCAAACTTGCTCTGGGAAATCTGGGAAAGCTGTTTATTTCAACAACCCAATGTGGCCAGGAGAAGCCCATTCAATCAAAGTAGAAAAGATCTTATACAAGGAAAAGTCGGAGTACCAGGAGGTCTTGGTTTTTGAGTCATCAACTTATGGGAAAGTGCTTGTACTTGATGGAATAGTTCAATTGACTGAGAAGGATGAATGTGCTTACCAGGAGATGATAGCTCATCTTCCCCTCTGTTCAATTCAGTCCCCCAAAACTGTTTTAGTTGTTGGTGGTGGAGATGGTGGTGTTCTCAGGGAAGTAGCCCGCCACAGCTCTGTTGAACATATTGATATTTGTGAGATAGATAAGATGGTTATTGATGTTTCTAGGAAATTTTTTCCACAGTTAGCTATTGGGTTTGAAGATTCTCGAGTACATCTGCATGTTGGTGATGCTGTTGAATTTCTTAAATCTGCTTGTGAAGGGAAGTATGATGCCATAATTGTTGATTCCTCAGATCCCGTGGGTCCTGCCCAGGAACTTGTTGAGAAACCTTTTTTTGATACAATAGCTAGGGCACTAAGGCCTGGCGGAGTTCTTTGTAATATGGCAGAAAGTATGTGGCTTCATACACACCTTATTCAAGATATGATCTCTATTTGCCGAGAAACATTCAAAGGTTCTGTATGTTATGCTTGGGCCAGTGTACCAACATATCCTAGTGGTGTGATAGGCTTTCTTCTCTGTGCAACAGAAGGGCCGCCTGTTGATTTTGTGAATCCTATCAATCCCATTGAAAAGTTGGAAGGTGCTAATGAGCACAAAAGAGAACTTCGATTCTACAATTCAGAGATGCACTCAGCTGCTTTTGCGTTGCCTGCGTTCTTGAAGAGAGAAGTGAGTGTGCTCCGTGATCTCTCCCTTCAGTAG
>Glyma.04g237300.1.p sequence-type=predicted peptide transcript=Glyma.04g237300.1 locus=Glyma.04g237300 ID=Glyma.04g237300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MEDGAGRGLECQKTMDGKVSNSNGPEKEIPSCCLKAKASIPESEAKFHSTVVSGWFSASQTCSGKSGKAVYFNNPMWPGEAHSIKVEKILYKEKSEYQEVLVFESSTYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIQSPKTVLVVGGGDGGVLREVARHSSVEHIDICEIDKMVIDVSRKFFPQLAIGFEDSRVHLHVGDAVEFLKSACEGKYDAIIVDSSDPVGPAQELVEKPFFDTIARALRPGGVLCNMAESMWLHTHLIQDMISICRETFKGSVCYAWASVPTYPSGVIGFLLCATEGPPVDFVNPINPIEKLEGANEHKRELRFYNSEMHSAAFALPAFLKREVSVLRDLSLQ* >Glyma.04g237300.2.p sequence-type=predicted peptide transcript=Glyma.04g237300.2 locus=Glyma.04g237300 ID=Glyma.04g237300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MEDGAGRGLECQKTMDGKVSNSNGPEKEIPSCCLKAKASIPESEAKFHSTVVSGWFSASQTCSGKSGKAVYFNNPMWPGEAHSIKVEKILYKEKSEYQEVLVFESSTYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIQSPKTVLVVGGGDGGVLREVARHSSVEHIDICEIDKMVIDVSRKFFPQLAIGFEDSRVHLHVGDAVEFLKSACEGKYDAIIVDSSDPVGPAQELVEKPFFDTIARALRPGGVLCNMAESMWLHTHLIQDMISICRETFKGSVCYAWASVPTYPSGVIGFLLCATEGPPVDFVNPINPIEKLEGANEHKRELRFYNSEMHSAAFALPAFLKREVSVLRDLSLQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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