Glyma.04g236300

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Report for Sequence Feature Glyma.04g236300

Feature Type:	gene_model
Chromosome:	Gm04
Start:	50451149
stop:	50453589
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.04g236300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G27890.1	AT	HSP20-like chaperones superfamily protein	JGI	N/A	IEA
AT5G53400.1	AT	HSP20-like chaperones superfamily protein	JGI	N/A	IEA
GO:0006457	GO-bp	protein folding	EnsemblGenomes	N/A	IEA
GO:0007275	GO-bp	multicellular organism development	EnsemblGenomes	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
GO:0051082	GO-mf	unfolded protein binding	EnsemblGenomes	N/A	IEA
KOG2265	KOG	Nuclear distribution protein NUDC	JGI	N/A	IEA
PTHR12356	Panther	NUCLEAR MOVEMENT PROTEIN NUDC	JGI	N/A	IEA
PF04969	PFAM	CS domain	JGI	N/A	IEA

Expression Patterns of Glyma.04g236300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g236300 not represented in the dataset	Glyma.04g236300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.04g236300

Paralog	Evidence	Comments
Glyma.06g128000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g236300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma04g41480	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.04g236300

Limit To All Plant Sequences

>Glyma.04g236300.2 sequence-type=transcript locus=Glyma.04g236300 ID=Glyma.04g236300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAGTGGTGGATCCGTTTACCGCAGCAAACACTCTTCTGAGTTCTGAGCTAGCGAGGTTGCAATGGCGATTATCTCCGATTTCAACGAAGAGGAGCAGAAACCCACTCACTCTTCACCACCGCAACCCCAAtcctcttcctcttcctcttcctcttcGTTCAGTGCTGCTTTTGACCGGTCAAACCCTATCGCTTTTCTGGAGAGAGTCTTCCAGTTCGTCTCCGAACACAGCGACTTTCTGGCGACGGAGAGCGCCGAGAAGGAGATAGCGTTGCTGGTGCGCGCCGCCGGGAAGAAGAAGAGGGAGTTTCTCAAGTCGGAGAGAGAAAAGGCCGAAAAGAAGAAGAGAGAGGACCTCAAGGCCTCGGAGGAGAGGGAAAAATCCGACAAGAGGTTGAAGGAAGAGAAGGAACCCAAAGCCGAAGACACCAGCAAAGACGAAAGCACCTCCAAAGTTCCAAACAAAGGTAATGGCTTAGATTTAGAGAAATACTCTTGGACTCAATCACTTCAAGAGGTTAATGTTAATGTTCCGGTGCCAAATGGAACCAAATCAAGATTTGTTACTGTTGAGATAAAGAAGAACCATCTAAAAGTTGGACTCAAAGGCCAGCCTCCAATTATTGAGGGGGAGTTTTATAAGTCTGTCAAGCCTGATGATTGCTATTGGAGTATAGAATGCAATTTCTATTCTTTTGACCAAGCATGATCAAATGGAATGGTGGAAATGTCTAGTGAAAGGTGATCCTGAGATTGATACCCAAAAGGTTGAACCTGAAAACAGCAAACTTGGTGACCTGGATCCTGAGACTCGACAGACTGTTGAAAAAATGATGTTTGACCAGAGGCAGAAGTCTATGGGCCTCCCTACCAGTGAAGAGCTCCAGAAGCAGGAAATGTTGAAGAAATTTATGTCTGAGCATCCGGAGATGGACTTTTCTAGGGCTAAAATATCATAAATGGGTGCATTACTCTTGGCAAACTTTTTTGGGTCTGATCTTATTGCATGCAGGCAGGTCCAGCTATTATACTAATACTGGTGCTACCTTTAATCGCAGTTTATTATCGTGTTATTTCTTTTTGGGTTTTGAACACAATGAACTTTGTTCATAGTAGTTTTTTTATTTTGATATAGTCAGATCTATTTTGGAAATGATCTTTATTGCATACAGGCTACTGGTGGTACCTTTGGTTGCTGTTTATCTTGTTATCTCTTTTTGGTTGTGAATGCAGTGAAACTTTGTTCATAATAGCTTATATTTTGAATGGAGAATTTACGGCTAGATTTATTTTCA

Coding sequences of Glyma.04g236300

Limit To All Plant Sequences

>Glyma.04g236300.1 sequence-type=CDS polypeptide=Glyma.04g236300.1.p locus=Glyma.04g236300 ID=Glyma.04g236300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGATTATCTCCGATTTCAACGAAGAGGAGCAGAAACCCACTCACTCTTCACCACCGCAACCCCAATCCTCTTCCTCTTCCTCTTCCTCTTCGTTCAGTGCTGCTTTTGACCGGTCAAACCCTATCGCTTTTCTGGAGAGAGTCTTCCAGTTCGTCTCCGAACACAGCGACTTTCTGGCGACGGAGAGCGCCGAGAAGGAGATAGCGTTGCTGGTGCGCGCCGCCGGGAAGAAGAAGAGGGAGTTTCTCAAGTCGGAGAGAGAAAAGGCCGAAAAGAAGAAGAGAGAGGACCTCAAGGCCTCGGAGGAGAGGGAAAAATCCGACAAGAGGTTGAAGGAAGAGAAGGAACCCAAAGCCGAAGACACCAGCAAAGACGAAAGCACCTCCAAAGTTCCAAACAAAGGTAATGGCTTAGATTTAGAGAAATACTCTTGGACTCAATCACTTCAAGAGGTTAATGTTAATGTTCCGGTGCCAAATGGAACCAAATCAAGATTTGTTACTGTTGAGATAAAGAAGAACCATCTAAAAGTTGGACTCAAAGGCCAGCCTCCAATTATTGAGGGGGAGTTTTATAAGTCTGTCAAGCCTGATGATTGCTATTGGAGTATAGAGGATCAGAATGCAATTTCTATTCTTTTGACCAAGCATGATCAAATGGAATGGTGGAAATGTCTAGTGAAAGGTGATCCTGAGATTGATACCCAAAAGGTTGAACCTGAAAACAGCAAACTTGGTGACCTGGATCCTGAGACTCGACAGACTGTTGAAAAAATGATGTTTGACCAGAGGCAGAAGTCTATGGGCCTCCCTACCAGTGAAGAGCTCCAGAAGCAGGAAATGTTGAAGAAATTTATGTCTGAGCATCCGGAGATGGACTTTTCTAGGGCTAAAATATCATAA

>Glyma.04g236300.2 sequence-type=CDS polypeptide=Glyma.04g236300.2.p locus=Glyma.04g236300 ID=Glyma.04g236300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGATTATCTCCGATTTCAACGAAGAGGAGCAGAAACCCACTCACTCTTCACCACCGCAACCCCAATCCTCTTCCTCTTCCTCTTCCTCTTCGTTCAGTGCTGCTTTTGACCGGTCAAACCCTATCGCTTTTCTGGAGAGAGTCTTCCAGTTCGTCTCCGAACACAGCGACTTTCTGGCGACGGAGAGCGCCGAGAAGGAGATAGCGTTGCTGGTGCGCGCCGCCGGGAAGAAGAAGAGGGAGTTTCTCAAGTCGGAGAGAGAAAAGGCCGAAAAGAAGAAGAGAGAGGACCTCAAGGCCTCGGAGGAGAGGGAAAAATCCGACAAGAGGTTGAAGGAAGAGAAGGAACCCAAAGCCGAAGACACCAGCAAAGACGAAAGCACCTCCAAAGTTCCAAACAAAGGTAATGGCTTAGATTTAGAGAAATACTCTTGGACTCAATCACTTCAAGAGGTTAATGTTAATGTTCCGGTGCCAAATGGAACCAAATCAAGATTTGTTACTGTTGAGATAAAGAAGAACCATCTAAAAGTTGGACTCAAAGGCCAGCCTCCAATTATTGAGGGGGAGTTTTATAAGTCTGTCAAGCCTGATGATTGCTATTGGAGTATAGAATGCAATTTCTATTCTTTTGACCAAGCATGA

Predicted protein sequences of Glyma.04g236300

Limit To All Plant Sequences

>Glyma.04g236300.1.p sequence-type=predicted peptide transcript=Glyma.04g236300.1 locus=Glyma.04g236300 ID=Glyma.04g236300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAIISDFNEEEQKPTHSSPPQPQSSSSSSSSSFSAAFDRSNPIAFLERVFQFVSEHSDFLATESAEKEIALLVRAAGKKKREFLKSEREKAEKKKREDLKASEEREKSDKRLKEEKEPKAEDTSKDESTSKVPNKGNGLDLEKYSWTQSLQEVNVNVPVPNGTKSRFVTVEIKKNHLKVGLKGQPPIIEGEFYKSVKPDDCYWSIEDQNAISILLTKHDQMEWWKCLVKGDPEIDTQKVEPENSKLGDLDPETRQTVEKMMFDQRQKSMGLPTSEELQKQEMLKKFMSEHPEMDFSRAKIS*

>Glyma.04g236300.2.p sequence-type=predicted peptide transcript=Glyma.04g236300.2 locus=Glyma.04g236300 ID=Glyma.04g236300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAIISDFNEEEQKPTHSSPPQPQSSSSSSSSSFSAAFDRSNPIAFLERVFQFVSEHSDFLATESAEKEIALLVRAAGKKKREFLKSEREKAEKKKREDLKASEEREKSDKRLKEEKEPKAEDTSKDESTSKVPNKGNGLDLEKYSWTQSLQEVNVNVPVPNGTKSRFVTVEIKKNHLKVGLKGQPPIIEGEFYKSVKPDDCYWSIECNFYSFDQA*

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