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Report for Sequence Feature Glyma.04g233200

Feature Type:gene_model
Chromosome:Gm04
Start:50148275
stop:50150727
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g233200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G27745.1AT Yippee family putative zinc-binding protein JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG3399 KOG Predicted Yippee-type zinc-binding protein JGI N/AIEA
PTHR13847Panther FAD NAD BINDING OXIDOREDUCTASES JGI N/AIEA
PTHR13847:SF40Panther JGI N/AIEA
PF03226PFAM Yippee zinc-binding/DNA-binding /Mis18, centromere assembly JGI N/AIEA

Expression Patterns of Glyma.04g233200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g233200
ParalogEvidenceComments
Glyma.06g131600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g233200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g41160 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g233200
>Glyma.04g233200.2 sequence-type=transcript locus=Glyma.04g233200 ID=Glyma.04g233200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCTACAAAAGATAAAATAAAATTGATCACTCCAAACTAAAAAGTTATAAAAAAAAAAAAAGACAAATATATTATCATCTGATCTCTACTTTCAACCATTGAAGCCACACTCAGACTCTCATGACTTTCGGGTCATCATTGAGCTTGCTGTAGTGAGGTGTTTAATCTGAAATTTGTTTGACCAAATTCATGGCGGAACTGATAGGGCCTCGCTTGTACAGCTGCTCTAATTGTAGAAACCATGTCTCACTCCATGATGATATTATTTCCAAGGCTTTTCATGGAAGAAACGGCCGAGCCTTTCTGTTTTCCCATGCAATGAATATTGTCACGGGGCCAAAAGAAGACAGGCATCTCTTGACTGGCCTCCATACTGTTGCTGATGTTTATTGTGGCGATTGCCGTGAAGTGTTGGGTTGGAAGTATGAAAGAGCTTATGAAGCATCCCAGAAGTACAAGGAAGGAAAGTTCATACTTGAAAAGTCAAAAATTGTTAAGGAGAACTGGTAGCATTCCTTTCTGCTCCCCATTCTATTCATTCCGCTCTTCGTGTTGGTTCGTTCATGTTTTGTGATTGTCATCTTGTA

>Glyma.04g233200.3 sequence-type=transcript locus=Glyma.04g233200 ID=Glyma.04g233200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTAACGCTTTCTTATGCATGTCATTCATTAGCTTAACTAATAATATACAACAAATAACTACAAACAATCTAATCTGCCTTTTTTTCTTAACTTTCTTCAGAAAAATGAAAATTAGGCTTTTTTACAGTTCAGATCCTCAACAACCAGTTATTTTTTATTGACTTTCGGGTCATCATTGAGCTTGCTGTAGTGAGGTGTTTAATCTGAAATTTGTTTGACCAAATTCATGGCGGAACTGATAGGGCCTCGCTTGTACAGCTGCTCTAATTGTAGAAACCATGTCTCACTCCATGATGATATTATTTCCAAGGCTTTTCATGGAAGAAACGGCCGAGCCTTTCTGTTTTCCCATGCAATGAATATTGTCACGGGGCCAAAAGAAGACAGGCATCTCTTGACTGGCCTCCATACTGTTGCTGATGTTTATTGTGGCGATTGCCGTGAAGTGTTGGGTTGGAAGTATGAAAGAGCTTATGAAGCATCCCAGAAGTACAAGGAAGGAAAGTTCATACTTGAAAAGTCAAAAATTGTTAAGGAGAACTGGTAGCATTCCTTTCTGCTCCCCATTCTATTCATTCCGCTCTTCGTGTTGGTTCGTTCATGTTTTGTGATTGTCATCTTGTA

>Glyma.04g233200.4 sequence-type=transcript locus=Glyma.04g233200 ID=Glyma.04g233200.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
GACCATATATAGTGTATTTTTTTTTCATGCCCCTAATGGGGAATCTTCATTCATATTTTTGTGATCAAGCCTACTCTTGCACGCTAACTAACGCCATATATTTCTTCTTATCTTATTGTTGCAGACTTTCGGGTCATCATTGAGCTTGCTGTAGTGAGGTGTTTAATCTGAAATTTGTTTGACCAAATTCATGGCGGAACTGATAGGGCCTCGCTTGTACAGCTGCTCTAATTGTAGAAACCATGTCTCACTCCATGATGATATTATTTCCAAGGCTTTTCATAAACGGCCGAGCCTTTCTGTTTTCCCATGCAATGAATATTGTCACGGGGCCAAAAGAAGACAGGCATCTCTTGACTGGCCTCCATACTGTTGCTGATGTTTATTGTGGCGATTGCCGTGAAGTGTTGGGTTGGAAGTATGAAAGAGCTTATGAAGCATCCCAGAAGTACAAGGAAGGAAAGTTCATACTTGAAAAGTCAAAAATTGTTAAGGAGAACTGGTAGCATTCCTTTCTGCTCCCCATTCTATTCATTCCGCTCTTCGTGTTGGTTCGTTCATGTTTTGTGATTGTCATCTTGTA
Coding sequences of Glyma.04g233200
>Glyma.04g233200.1 sequence-type=CDS polypeptide=Glyma.04g233200.1.p locus=Glyma.04g233200 ID=Glyma.04g233200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGAACTGATAGGGCCTCGCTTGTACAGCTGCTCTAATTGTAGAAACCATGTCTCACTCCATGATGATATTATTTCCAAGGCTTTTCATGGAAGAAACGGCCGAGCCTTTCTGTTTTCCCATGCAATGAATATTGTCACGGGGCCAAAAGAAGACAGGCATCTCTTGACTGGCCTCCATACTGTTGCTGATGTTTATTGTGGCGATTGCCGTGAAGTGTTGGGTTGGAAGTATGAAAGAGCTTATGAAGCATCCCAGAAGTACAAGGAAGGAAAGTTCATACTTGAAAAGTCAAAAATTGTTAAGGAGAACTGGTAG

>Glyma.04g233200.2 sequence-type=CDS polypeptide=Glyma.04g233200.2.p locus=Glyma.04g233200 ID=Glyma.04g233200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGAACTGATAGGGCCTCGCTTGTACAGCTGCTCTAATTGTAGAAACCATGTCTCACTCCATGATGATATTATTTCCAAGGCTTTTCATGGAAGAAACGGCCGAGCCTTTCTGTTTTCCCATGCAATGAATATTGTCACGGGGCCAAAAGAAGACAGGCATCTCTTGACTGGCCTCCATACTGTTGCTGATGTTTATTGTGGCGATTGCCGTGAAGTGTTGGGTTGGAAGTATGAAAGAGCTTATGAAGCATCCCAGAAGTACAAGGAAGGAAAGTTCATACTTGAAAAGTCAAAAATTGTTAAGGAGAACTGGTAG

>Glyma.04g233200.3 sequence-type=CDS polypeptide=Glyma.04g233200.3.p locus=Glyma.04g233200 ID=Glyma.04g233200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGAACTGATAGGGCCTCGCTTGTACAGCTGCTCTAATTGTAGAAACCATGTCTCACTCCATGATGATATTATTTCCAAGGCTTTTCATGGAAGAAACGGCCGAGCCTTTCTGTTTTCCCATGCAATGAATATTGTCACGGGGCCAAAAGAAGACAGGCATCTCTTGACTGGCCTCCATACTGTTGCTGATGTTTATTGTGGCGATTGCCGTGAAGTGTTGGGTTGGAAGTATGAAAGAGCTTATGAAGCATCCCAGAAGTACAAGGAAGGAAAGTTCATACTTGAAAAGTCAAAAATTGTTAAGGAGAACTGGTAG

>Glyma.04g233200.4 sequence-type=CDS polypeptide=Glyma.04g233200.4.p locus=Glyma.04g233200 ID=Glyma.04g233200.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTCACTCCATGATGATATTATTTCCAAGGCTTTTCATAAACGGCCGAGCCTTTCTGTTTTCCCATGCAATGAATATTGTCACGGGGCCAAAAGAAGACAGGCATCTCTTGACTGGCCTCCATACTGTTGCTGATGTTTATTGTGGCGATTGCCGTGAAGTGTTGGGTTGGAAGTATGAAAGAGCTTATGAAGCATCCCAGAAGTACAAGGAAGGAAAGTTCATACTTGAAAAGTCAAAAATTGTTAAGGAGAACTGGTAG
Predicted protein sequences of Glyma.04g233200
>Glyma.04g233200.1.p sequence-type=predicted peptide transcript=Glyma.04g233200.1 locus=Glyma.04g233200 ID=Glyma.04g233200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAELIGPRLYSCSNCRNHVSLHDDIISKAFHGRNGRAFLFSHAMNIVTGPKEDRHLLTGLHTVADVYCGDCREVLGWKYERAYEASQKYKEGKFILEKSKIVKENW*

>Glyma.04g233200.2.p sequence-type=predicted peptide transcript=Glyma.04g233200.2 locus=Glyma.04g233200 ID=Glyma.04g233200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAELIGPRLYSCSNCRNHVSLHDDIISKAFHGRNGRAFLFSHAMNIVTGPKEDRHLLTGLHTVADVYCGDCREVLGWKYERAYEASQKYKEGKFILEKSKIVKENW*

>Glyma.04g233200.3.p sequence-type=predicted peptide transcript=Glyma.04g233200.3 locus=Glyma.04g233200 ID=Glyma.04g233200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAELIGPRLYSCSNCRNHVSLHDDIISKAFHGRNGRAFLFSHAMNIVTGPKEDRHLLTGLHTVADVYCGDCREVLGWKYERAYEASQKYKEGKFILEKSKIVKENW*

>Glyma.04g233200.4.p sequence-type=predicted peptide transcript=Glyma.04g233200.4 locus=Glyma.04g233200 ID=Glyma.04g233200.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSHSMMILFPRLFINGRAFLFSHAMNIVTGPKEDRHLLTGLHTVADVYCGDCREVLGWKYERAYEASQKYKEGKFILEKSKIVKENW*






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