Report for Sequence Feature Glyma.04g228400
Feature Type: gene_model
Chromosome: Gm04
Start: 49767720
stop: 49769824
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.04g228400
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G24490.1 AT
30S ribosomal protein, putative
JGI N/A IEA
GO:0044238 GO-bp
primary metabolic process
EnsemblGenomes N/A IEA
GO:0044238 GO-bp
primary metabolic process
JGI N/A IEA
GO:0045900 GO-bp
negative regulation of translational elongation
EnsemblGenomes N/A IEA
GO:0022627 GO-cc
cytosolic small ribosomal subunit
EnsemblGenomes N/A IEA
GO:0043022 GO-mf
ribosome binding
EnsemblGenomes N/A IEA
GO:0043024 GO-mf
ribosomal small subunit binding
EnsemblGenomes N/A IEA
PF02482 PFAM
Sigma 54 modulation protein / S30EA ribosomal protein
JGI N/A IEA
Expression Patterns of Glyma.04g228400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.04g228400
Paralog Evidence Comments
Glyma.06g136500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.04g228400 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma04g40650 Wm82.a1.v1.1 IGC As supplied by JGI
Coding sequences of Glyma.04g228400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.04g228400.1 sequence-type=CDS polypeptide=Glyma.04g228400.1.p locus=Glyma.04g228400 ID=Glyma.04g228400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCACTCTCTTTAACTTCAACTCCACCCTTCGCCCCTCTTGTTATCATCCCTCCTCACCCTCCTCATCTTATCCCCACTTCTTCAAGACACTCTCCACAACTTTCTTGGGCCACACCGTAACCCTCAAATATGCTGCCACTTCCGCAAGCATCCCTCCCCGTTCACTCTCCGCTCACATGTCATGGGACGGTCCTCTCTCTTCCGTCAAATTGATCATTCAGGGTAAAAATCTCGAGCTCACTGATGCAGTGAAGCAGCATGTGGAAGACAAAGTGGGGAAAGCGGTTCAGAAGCACAGTCACCTAGTGAGAGAGGTTGATGTGAGGCTTTCTATTCGAGGAGGAGGTGAATTTGGGCGAGGACCCAGAACTCGTAGATGTGAGGTGACTTTGTTCACGAAAAGGCATGGTGTGGTGCGGGCTGAGGAGGATGCTGAAAGCACCTATGGAAGTATAGATTTGGTGTCATCGATCATTCAGAGGAAGTTGAGGAAAATAAAGGAGAAGGTGTCAGATCATGGTCGCCACATGAAGGGGTTCAATAGGCTGAAGGTTAGGGAGCCCGTGGAGCAATTACCTGTCGAAGAGGATGAAATATTATCCCCACAGGAGGAGGAAGAATCAATTGACGAGGTTGTTCGCACAAAGTACTTTGACATGCCACCATTGACTGTGGCTGAAGCAATTGAGCAGCTTGAAAATGTTGATCATGACTTCTATGGTTTTCGAAATGAAGAAACTGGGGAAATTAATATTGTGTACAAAAGAAAAGAAGGAGGATATGGACTCATTGTACCAAAGGGAGATGGCGAAGCAGAGAAATTGGAGCCTGTAGTGCTTGAACCAGCTATAGAATCCTCCCTGAAAGAATGA
Predicted protein sequences of Glyma.04g228400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.04g228400.1.p sequence-type=predicted peptide transcript=Glyma.04g228400.1 locus=Glyma.04g228400 ID=Glyma.04g228400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATLFNFNSTLRPSCYHPSSPSSSYPHFFKTLSTTFLGHTVTLKYAATSASIPPRSLSAHMSWDGPLSSVKLIIQGKNLELTDAVKQHVEDKVGKAVQKHSHLVREVDVRLSIRGGGEFGRGPRTRRCEVTLFTKRHGVVRAEEDAESTYGSIDLVSSIIQRKLRKIKEKVSDHGRHMKGFNRLKVREPVEQLPVEEDEILSPQEEEESIDEVVRTKYFDMPPLTVAEAIEQLENVDHDFYGFRNEETGEINIVYKRKEGGYGLIVPKGDGEAEKLEPVVLEPAIESSLKE*