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Report for Sequence Feature Glyma.04g226100

Feature Type:gene_model
Chromosome:Gm04
Start:49592984
stop:49595506
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g226100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G18010.1AT Major facilitator superfamily protein JGI N/AIEA
GO:0055085GO-bp transmembrane transport JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
KOG3098 KOG Uncharacterized conserved protein JGI N/AIEA
PTHR23294Panther ET TRANSLATION PRODUCT-RELATED JGI N/AIEA
PF05978PFAM Ion channel regulatory protein UNC-93 JGI N/AIEA

Expression Patterns of Glyma.04g226100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g226100
ParalogEvidenceComments
Glyma.06g138800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g226100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g40400 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g226100
>Glyma.04g226100.1 sequence-type=CDS polypeptide=Glyma.04g226100.1.p locus=Glyma.04g226100 ID=Glyma.04g226100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTACCCTCGGAAACGAACAACCAGGTACCCAGATCCCAGAAAACGCTAAAAGTTTTTCCCTTTTCAGATACAATTCACCCTTCATTCAGATCGTACTCATCGGGTTGGTCTGTTTCTGTTGCCCGGGAATGTTCAACGCCCTCTCCGGCATGGGTGGCGGTGGCCAAGTCAACTCGACCGCCTCCAACAACGCCCTCACCGCCCTCTACACCACCTTCGCCATCTTCGGCATCGTCGGGGGCGGCATCTACAATATCCTCGGACCCCACCTCACCCTCTTTGCAGGTTGCTCTACCTACGTCCTCTACGCGGGCTCCTTCCTCTACTACAACCACTACCAGCACCAGTTCTTCGCCATCGTCGCCGGCGCCATCCTCGGCGTCGGCGCCGGCCTCCTCTGGGCCGCGCAGGGCGCCATCATGACCTCGTACCCCCCGGAGAATCGCAAAGGCACCTACATTTCAATTTTCTGGAGCATCTTCAACATGGGGGGTGTCATCGGTGGCCTCATTCCCTTCATTCTGAATTACAATCGCGGTGACTCTGCTGCCACTGTCAACGACGGAACCTACATAGGATTCATGGTATTTATGTCCGTTGGGGCTGTTCTGTCGTTGACCATCTTGCCGGCCAGCAAGGTTGTTCGCAACGATGGGACTCGGTGTACTAACATGTTGTACTCCAATGTGGCAACTGAATCTGTTGAGATTCTCAAACTTTTCTACAACTGGAAGATGCTTCTTATTATTCCCGCTGCTTGGTCTAGTAATTTTTTTTACACCTACCAGTTTAACCATGTAAATAAGCCGCAGTTTAATTTGAGGACTAGAGGGTTCAACAATGTGTTCTATTGGGGGGCGCAGATGGTGGGTTCTGTTGGGATTGGGTATGTGATGGATTTCAGCTTTAAGAGCAGGAGGAAGAGAGGGGTTCTGGGGATTGGTGTGGTTGCTCTTCTTGCTTCTGCTATTTGGGGTGGTGCACTTGCAAATCAGATAAATCATGACTCCAGGGTGATCTTGGATTTTAAGGACTCGGGCTCTCGGTATGCTGGGCCTTTTGTTTTGTATTTCAGTTTTGGGTTGCTGGATGCCATGTTCCAGAGCATGGTCTATTGGGTTATTGGAGCCCTGGCTAATGATTCTGAGATTCTTAGCAGGTATGCTGGGTTCTATAAAGGCATACAAAGTGCAGGGGCAGCAGTGGCTTGGCAAATTGATAACCAGAATGTGTCCGCTATGGCTCAGTTGATTGTGAATTGGGTACTCACTACTGTGAGCTATCCGTTGTTATTGGTTTTGATTGTTTTGGCTGTGAAACAGGACAACAAGGGAGAAGAGGAACCTATCAAACAGGTCGCTCCTTCGTCAGCTGAAAATGGCTTTGTCCAATGA
Predicted protein sequences of Glyma.04g226100
>Glyma.04g226100.1.p sequence-type=predicted peptide transcript=Glyma.04g226100.1 locus=Glyma.04g226100 ID=Glyma.04g226100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGTLGNEQPGTQIPENAKSFSLFRYNSPFIQIVLIGLVCFCCPGMFNALSGMGGGGQVNSTASNNALTALYTTFAIFGIVGGGIYNILGPHLTLFAGCSTYVLYAGSFLYYNHYQHQFFAIVAGAILGVGAGLLWAAQGAIMTSYPPENRKGTYISIFWSIFNMGGVIGGLIPFILNYNRGDSAATVNDGTYIGFMVFMSVGAVLSLTILPASKVVRNDGTRCTNMLYSNVATESVEILKLFYNWKMLLIIPAAWSSNFFYTYQFNHVNKPQFNLRTRGFNNVFYWGAQMVGSVGIGYVMDFSFKSRRKRGVLGIGVVALLASAIWGGALANQINHDSRVILDFKDSGSRYAGPFVLYFSFGLLDAMFQSMVYWVIGALANDSEILSRYAGFYKGIQSAGAAVAWQIDNQNVSAMAQLIVNWVLTTVSYPLLLVLIVLAVKQDNKGEEEPIKQVAPSSAENGFVQ*






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