Glyma.04g224100

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Report for Sequence Feature Glyma.04g224100

Feature Type:	gene_model
Chromosome:	Gm04
Start:	49456049
stop:	49460172
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.04g224100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G10850.1	AT	Metallo-hydrolase/oxidoreductase superfamily protein	JGI	N/A	IEA
GO:0016787	GO-mf	hydrolase activity	JGI	N/A	IEA
KOG0814	KOG	Glyoxylase	JGI	N/A	IEA
PTHR11935	Panther	BETA LACTAMASE DOMAIN	JGI	N/A	IEA
PTHR11935:SF7	Panther	PROTEIN Y17G7B.3	JGI	N/A	IEA
PF00753	PFAM	Metallo-beta-lactamase superfamily	JGI	N/A	IEA
GN7V-62636	SoyCyc9-rxn	hydroxyacylglutathione hydrolase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.04g224100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g224100 not represented in the dataset	Glyma.04g224100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.04g224100

Paralog	Evidence	Comments
Glyma.06g140800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g224100 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma04g40210	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.04g224100

Limit To All Plant Sequences

>Glyma.04g224100.2 sequence-type=transcript locus=Glyma.04g224100 ID=Glyma.04g224100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CGTTGCTTCTAAGTGCCTACACTACACACAGTCTATTTTCCTTCTCTTCGAACCATGAAAATCTATCACGTTCCTTGTCTTCGAGACAATTATTCCTACTTAATCGTTGACAAGAGCACCAAAGAAGGTGCGGTGGTGGACCCTGTAGAGCCTCAGAAAGTTCTAGAAGCTGCCAATTCACATTGGGTCAATCTCAAGCTTGTCCTCACCACACATCATCACGGGGATCATGCTGGTGGAAATGAAAAGATAAAGCAATTGGTGCCTGGAATCAAGGTCTATGGTAGTTTAATTGATAACGTCATAGGTTGCACTGATAAGGTTGAAAATGGGGATAAGGAGTCCCTTGGGGCTGATATTTATATATTGTGTCTTCACACACCTTGCCACACCAAAGGTCACATAAGCTATTATGTTACTGGCAAAGAGGAGGAGCAGCCTGCTGTTTTTACTGGAGACACACTGTTTATTGCTGATTGTGGGAAATTTTTCAAAGGAACTGCAGAGCAGATGTATCAGTCACTATGTGTAACATTAGGTTCATTACCAAAGCCAACACGAGTTTACTGTGGCCATGGGTATGCAGTGAGGAACTTGTAATTTGCTCTGACAATTGAGCCACATAATTTGAGGATACAACAGAAATTAACATAGGCTAAGAATCAGCAGCAAGCTGGTCAACTTACAATTTCCTCCACCATTGAGGAAGAAATGGAAACCAACCCATTTAAGAGGGTTGACCAACCCGACATTCAGGAGAAGGTAGGGTGCAAGTCTCCCGTTGAAGCTTTAAGAGAGTTACGGAAGCTGAAAGACAACTGGAAGGGGTAGTGGAATTAACTGATTACTGCATACTCCATGTGAAGGTGTTTTTATATGCATCTTGTTACTGTTGCTGAAACTGATCGAAAAGAAAGATATGAGATAATTGTCTTGTCATGTTAGGGGAGCGGATTGTGATTAAAATTTCCAATTCCTCGTATTGTCATCTAGACACGTATGTTACGTTGGTTAGTCTAATACTAAGATGTTCCATTTCATTCATGTCATATACCTGTGAACTTGAAAAACATTATTTTTTTCctctctctctctccctctctcCAACCGCGAAATTTTAATAAAATCAAGCACAGAAATACA

>Glyma.04g224100.3 sequence-type=transcript locus=Glyma.04g224100 ID=Glyma.04g224100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CGTTGCTTCTAAGTGCCTACACTACACACAGTCTATTTTCCTTCTCTTCGAACCATGAAAATCTATCACGTTCCTTGTCTTCGAGACAATTATTCCTACTTAATCGTTGACAAGAGCACCAAAGAAGGTGCGGTGGTGGACCCTGTAGAGCCTCAGAAAGTTCTAGAAGCTGCCAATTCACATTGGGTCAATCTCAAGCTTGTCCTCACCACACATCATCACGGGGATCATGCTGGTGGAAATGAAAAGATAAAGCAATTGGTGCCTGGAATCAAGGTCTATGGTAGTTTAATTGATAACGTCATAGGTTGCACTGATAAGGTTGAAAATGGGGATAAGGAGTCCCTTGGGGCTGATATTTATATATTGTGTCTTCACACACCTTGCCACACCAAAGGTCACATAAGCTATTATGTTACTGGCAAAGAGGAGGAGCAGCCTGCTGTTTTTACTGGAGACACACTGGAGAAGGTAGGGTGCAAGTCTCCCGTTGAAGCTTTAAGAGAGTTACGGAAGCTGAAAGACAACTGGAAGGGGTAGTGGAATTAACTGATTACTGCATACTCCATGTGAAGGTGTTTTTATATGCATCTTGTTACTGTTGCTGAAACTGATCGAAAAGAAAGATATGAGATAATTGTCTTGTCATGTTAGGGGAGCGGATTGTGATTAAAATTTCCAATTCCTCGTATTGTCATCTAGACACGTATGTTACGTTGGTTAGTCTAATACTAAGATGTTCCATTTCATTCATGTCATATACCTGTGAACTTGAAAAACATTATTTTTTTCctctctctctctccctctctcCAACCGCGAAATTTTAATAAAATCAAGCACAGAAATACA

>Glyma.04g224100.4 sequence-type=transcript locus=Glyma.04g224100 ID=Glyma.04g224100.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGTACTTGGTTATGAACATCAGATATTGGCTGGTTATGAACGTTTGTAAATTTTGTCATCATGGCAGGGATCATGCTGGTGGAAATGAAAAGATAAAGCAATTGGTGCCTGGAATCAAGGTCTATGGTAGTTTAATTGATAACGTCATAGGTTGCACTGATAAGGTTGAAAATGGGGATAAGGAGTCCCTTGGGGCTGATATTTATATATTGTGTCTTCACACACCTTGCCACACCAAAGGTCACATAAGCTATTATGTTACTGGCAAAGAGGAGGAGCAGCCTGCTGTTTTTACTGGAGACACACTGTTTATTGCTGATTGTGGGAAATTTTTCAAAGGAACTGCAGAGCAGATGTATCAGTCACTATGTGTAACATTAGGTTCATTACCAAAGCCAACACGAGTTTACTGTGGCCATGGGTATGCAGTGAGGAACTTGTAATTTGCTCTGACAATTGAGCCACATAATTTGAGGATACAACAGAAATTAACATAGGCTAAGAATCAGCAGCAAGCTGGTCAACTTACAATTTCCTCCACCATTGAGGAAGAAATGGAAACCAACCCATTTAAGAGGGTTGACCAACCCGACATTCAGGAGAAGGTAGGGTGCAAGTCTCCCGTTGAAGCTTTAAGAGAGTTACGGAAGCTGAAAGACAACTGGAAGGGGTAGTGGAATTAACTGATTACTGCATACTCCATGTGAAGGTGTTTTTATATGCATCTTGTTACTGTTGCTGAAACTGATCGAAAAGAAAGATATGAGATAATTGTCTTGTCATGTTAGGGGAGCGGATTGTGATTAAAATTTCCAATTCCTCGTATTGTCATCTAGACACGTATGTTACGTTGGTTAGTCTAATACTAAGATGTTCCATTTCATTCATGTCATATACCTGTGAACTTGAAAAACATTATTTTTTTCctctctctctctccctctctcCAACCGCGAAATTTTAATAAAATCAAGCACAGAAATACA

Coding sequences of Glyma.04g224100

Limit To All Plant Sequences

>Glyma.04g224100.1 sequence-type=CDS polypeptide=Glyma.04g224100.1.p locus=Glyma.04g224100 ID=Glyma.04g224100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAAATCTATCACGTTCCTTGTCTTCGAGACAATTATTCCTACTTAATCGTTGACAAGAGCACCAAAGAAGGTGCGGTGGTGGACCCTGTAGAGCCTCAGAAAGTTCTAGAAGCTGCCAATTCACATTGGGTCAATCTCAAGCTTGTCCTCACCACACATCATCACGGGGATCATGCTGGTGGAAATGAAAAGATAAAGCAATTGGTGCCTGGAATCAAGGTCTATGGTAGTTTAATTGATAACGTCATAGGTTGCACTGATAAGGTTGAAAATGGGGATAAGGAGTCCCTTGGGGCTGATATTTATATATTGTGTCTTCACACACCTTGCCACACCAAAGGTCACATAAGCTATTATGTTACTGGCAAAGAGGAGGAGCAGCCTGCTGTTTTTACTGGAGACACACTGTTTATTGCTGATTGTGGGAAATTTTTCAAAGGAACTGCAGAGCAGATGTATCAGTCACTATGTGTAACATTAGGTTCATTACCAAAGCCAACACGAGTTTACTGTGGCCATGGGGAGAAGGTAGGGTGCAAGTCTCCCGTTGAAGCTTTAAGAGAGTTACGGAAGCTGAAAGACAACTGGAAGGGGTAG

>Glyma.04g224100.2 sequence-type=CDS polypeptide=Glyma.04g224100.2.p locus=Glyma.04g224100 ID=Glyma.04g224100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAAATCTATCACGTTCCTTGTCTTCGAGACAATTATTCCTACTTAATCGTTGACAAGAGCACCAAAGAAGGTGCGGTGGTGGACCCTGTAGAGCCTCAGAAAGTTCTAGAAGCTGCCAATTCACATTGGGTCAATCTCAAGCTTGTCCTCACCACACATCATCACGGGGATCATGCTGGTGGAAATGAAAAGATAAAGCAATTGGTGCCTGGAATCAAGGTCTATGGTAGTTTAATTGATAACGTCATAGGTTGCACTGATAAGGTTGAAAATGGGGATAAGGAGTCCCTTGGGGCTGATATTTATATATTGTGTCTTCACACACCTTGCCACACCAAAGGTCACATAAGCTATTATGTTACTGGCAAAGAGGAGGAGCAGCCTGCTGTTTTTACTGGAGACACACTGTTTATTGCTGATTGTGGGAAATTTTTCAAAGGAACTGCAGAGCAGATGTATCAGTCACTATGTGTAACATTAGGTTCATTACCAAAGCCAACACGAGTTTACTGTGGCCATGGGTATGCAGTGAGGAACTTGTAA

>Glyma.04g224100.3 sequence-type=CDS polypeptide=Glyma.04g224100.3.p locus=Glyma.04g224100 ID=Glyma.04g224100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAAATCTATCACGTTCCTTGTCTTCGAGACAATTATTCCTACTTAATCGTTGACAAGAGCACCAAAGAAGGTGCGGTGGTGGACCCTGTAGAGCCTCAGAAAGTTCTAGAAGCTGCCAATTCACATTGGGTCAATCTCAAGCTTGTCCTCACCACACATCATCACGGGGATCATGCTGGTGGAAATGAAAAGATAAAGCAATTGGTGCCTGGAATCAAGGTCTATGGTAGTTTAATTGATAACGTCATAGGTTGCACTGATAAGGTTGAAAATGGGGATAAGGAGTCCCTTGGGGCTGATATTTATATATTGTGTCTTCACACACCTTGCCACACCAAAGGTCACATAAGCTATTATGTTACTGGCAAAGAGGAGGAGCAGCCTGCTGTTTTTACTGGAGACACACTGGAGAAGGTAGGGTGCAAGTCTCCCGTTGAAGCTTTAAGAGAGTTACGGAAGCTGAAAGACAACTGGAAGGGGTAG

>Glyma.04g224100.4 sequence-type=CDS polypeptide=Glyma.04g224100.4.p locus=Glyma.04g224100 ID=Glyma.04g224100.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAACATCAGATATTGGCTGGTTATGAACGTTTGTAAATTTTGTCATCATGGCAGGGATCATGCTGGTGGAAATGAAAAGATAAAGCAATTGGTGCCTGGAATCAAGGTCTATGGTAGTTTAATTGATAACGTCATAGGTTGCACTGATAAGGTTGAAAATGGGGATAAGGAGTCCCTTGGGGCTGATATTTATATATTGTGTCTTCACACACCTTGCCACACCAAAGGTCACATAAGCTATTATGTTACTGGCAAAGAGGAGGAGCAGCCTGCTGTTTTTACTGGAGACACACTGTTTATTGCTGATTGTGGGAAATTTTTCAAAGGAACTGCAGAGCAGATGTATCAGTCACTATGTGTAACATTAGGTTCATTACCAAAGCCAACACGAGTTTACTGTGGCCATGGGTATGCAGTGAGGAACTTGTAA

Predicted protein sequences of Glyma.04g224100

Limit To All Plant Sequences

>Glyma.04g224100.1.p sequence-type=predicted peptide transcript=Glyma.04g224100.1 locus=Glyma.04g224100 ID=Glyma.04g224100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKIYHVPCLRDNYSYLIVDKSTKEGAVVDPVEPQKVLEAANSHWVNLKLVLTTHHHGDHAGGNEKIKQLVPGIKVYGSLIDNVIGCTDKVENGDKESLGADIYILCLHTPCHTKGHISYYVTGKEEEQPAVFTGDTLFIADCGKFFKGTAEQMYQSLCVTLGSLPKPTRVYCGHGEKVGCKSPVEALRELRKLKDNWKG*

>Glyma.04g224100.2.p sequence-type=predicted peptide transcript=Glyma.04g224100.2 locus=Glyma.04g224100 ID=Glyma.04g224100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKIYHVPCLRDNYSYLIVDKSTKEGAVVDPVEPQKVLEAANSHWVNLKLVLTTHHHGDHAGGNEKIKQLVPGIKVYGSLIDNVIGCTDKVENGDKESLGADIYILCLHTPCHTKGHISYYVTGKEEEQPAVFTGDTLFIADCGKFFKGTAEQMYQSLCVTLGSLPKPTRVYCGHGYAVRNL*

>Glyma.04g224100.3.p sequence-type=predicted peptide transcript=Glyma.04g224100.3 locus=Glyma.04g224100 ID=Glyma.04g224100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKIYHVPCLRDNYSYLIVDKSTKEGAVVDPVEPQKVLEAANSHWVNLKLVLTTHHHGDHAGGNEKIKQLVPGIKVYGSLIDNVIGCTDKVENGDKESLGADIYILCLHTPCHTKGHISYYVTGKEEEQPAVFTGDTLEKVGCKSPVEALRELRKLKDNWKG*

>Glyma.04g224100.4.p sequence-type=predicted peptide transcript=Glyma.04g224100.4 locus=Glyma.04g224100 ID=Glyma.04g224100.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNIRYWLVMNVCKFCHHGRDHAGGNEKIKQLVPGIKVYGSLIDNVIGCTDKVENGDKESLGADIYILCLHTPCHTKGHISYYVTGKEEEQPAVFTGDTLFIADCGKFFKGTAEQMYQSLCVTLGSLPKPTRVYCGHGYAVRNL*

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