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Report for Sequence Feature Glyma.04g222900

Feature Type:gene_model
Chromosome:Gm04
Start:49346340
stop:49355316
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g222900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G40660.1AT Nucleic acid-binding, OB-fold-like protein JGI N/AIEA
GO:0006418GO-bp tRNA aminoacylation for protein translation EnsemblGenomesN/AIEA
GO:0017101GO-cc aminoacyl-tRNA synthetase multienzyme complex EnsemblGenomesN/AIEA
GO:0017102GO-cc methionyl glutamyl tRNA synthetase complex EnsemblGenomesN/AIEA
GO:0000049GO-mf tRNA binding EnsemblGenomesN/AIEA
GO:0000049GO-mf tRNA binding JGI N/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
KOG2241 KOG tRNA-binding protein JGI N/AIEA
PTHR11946Panther ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES JGI N/AIEA
PTHR11946:SF22Panther JGI N/AIEA
PF01588PFAM Putative tRNA binding domain JGI N/AIEA

Expression Patterns of Glyma.04g222900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g222900
ParalogEvidenceComments
Glyma.06g142400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g222900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g40090 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g222900
>Glyma.04g222900.1 sequence-type=CDS polypeptide=Glyma.04g222900.1.p locus=Glyma.04g222900 ID=Glyma.04g222900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTACCATTGAAAGTAGAAGGAAATCAGTGGCTTTGGCTCTCTCCAAGTACTTTTCATTGGATCCTAGTGTTGTTCCAGCCGATAGTTCAGACAGTGATATTAAGAGTCTTTACTTGAACATCATAGCGGTTTCTGGACATAGGGTTAATCACTCTGATGAGGTGTTGAAGTGGGTAGCATTTGCAGAAGCCTTCCCCGTGGCCCTTGATGCATGCTTTGAGAATCTCAAGAGATTAAATGATGAACTGTCTGGAAAGGCTGTGCTTCTGGGCAATGGATTGAACCCCTCTGAAGCTGATGTTATAGTGTATTCAGTGGTTCATTCTTCCCTGATCAACCTTTCAGATACAAGCAAGGAGAAACTGCCACATGTCTTGAGATGGATGGATTACATCCAGCACAAGCAAGAATTTGTAGGTTTATTTGAGAAAATATTGTTGAAGAAGCCTGAATTTGAGCCTCTGGTAACAAAACCTGTTGGTGCTGTGGAAGCTGATTTAAAATCAAACAAGACTGAGCAAAGTATAAAGAATGTCAACAAGTCCGAAGCAGATTCAAGCAAGGATAAAAACAAAGCTGAGGGAAAGGCAACAGGAGGAAAATCAACTGGAGACAAAGAACCTACCAAAGGCAAGGCAAAACCTGCTGACAAAGTGGCTGAGAAAGAGAATGAAGTTAGCGTCAGTTTGCTTAATATTCAAGTTGGATTAATTCACAAAGCGTGGAAGCATCCATCTGCAGATAGTTTGCTAGTTGAGGAGATAGATGTTGGGGAGGCCAAAGTGCGGCAGGTTGTTAGTGGTTTGGCAAAGTACTACAGTCCTGATGAGTTGATGAATCGTCGTGTTGTACTTATAACAAATGTCAAACCTGGAAAACTACGGGATGTGATGTCTGAAGGACTGGTCTTATGTGCTTCGAATGAAGGTCCAACCATTGTGGAGCCCTTGCTCCCTCCAGAAGGAGCAAAAATTGGTGAACATATTTCTTTTTCTGGGATTGATGGAAAGCCAGAAGATGTACTAAACCCAAAAAAGAAACAGCTGGAGAAGATTACACCGCATCTTTTCACTGATGACAAGGGGGTGGCCACATACAAGGGAATACCATTTATGACGTCTGGTGGACCATGCACATCATCCATTCCCAGAGCAACTATTAGATAA
Predicted protein sequences of Glyma.04g222900
>Glyma.04g222900.1.p sequence-type=predicted peptide transcript=Glyma.04g222900.1 locus=Glyma.04g222900 ID=Glyma.04g222900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATIESRRKSVALALSKYFSLDPSVVPADSSDSDIKSLYLNIIAVSGHRVNHSDEVLKWVAFAEAFPVALDACFENLKRLNDELSGKAVLLGNGLNPSEADVIVYSVVHSSLINLSDTSKEKLPHVLRWMDYIQHKQEFVGLFEKILLKKPEFEPLVTKPVGAVEADLKSNKTEQSIKNVNKSEADSSKDKNKAEGKATGGKSTGDKEPTKGKAKPADKVAEKENEVSVSLLNIQVGLIHKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYYSPDELMNRRVVLITNVKPGKLRDVMSEGLVLCASNEGPTIVEPLLPPEGAKIGEHISFSGIDGKPEDVLNPKKKQLEKITPHLFTDDKGVATYKGIPFMTSGGPCTSSIPRATIR*






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