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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G17510.1 | AT | ribonuclease II family protein | JGI | N/A | IEA |
| GO:0006364 | GO-bp | rRNA processing | EnsemblGenomes | N/A | IEA |
| GO:0006401 | GO-bp | RNA catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0090305 | GO-bp | nucleic acid phosphodiester bond hydrolysis | EnsemblGenomes | N/A | IEA |
| GO:0090503 | GO-bp | RNA phosphodiester bond hydrolysis, exonucleolytic | EnsemblGenomes | N/A | IEA |
| GO:0000178 | GO-cc | exosome (RNase complex) | EnsemblGenomes | N/A | IEA |
| GO:0000175 | GO-mf | 3'-5'-exoribonuclease activity | EnsemblGenomes | N/A | IEA |
| GO:0003723 | GO-mf | RNA binding | JGI | N/A | IEA |
| GO:0004519 | GO-mf | endonuclease activity | EnsemblGenomes | N/A | IEA |
| GO:0004540 | GO-mf | ribonuclease activity | JGI | N/A | IEA |
| KOG2102 | KOG | Exosomal 3'-5' exoribonuclease complex, subunit Rrp44/Dis3 | JGI | N/A | IEA |
| PTHR23355 | Panther | RIBONUCLEASE | JGI | N/A | IEA |
| PTHR23355:SF13 | Panther | JGI | N/A | IEA | |
| PF00773 | PFAM | RNB domain | JGI | N/A | IEA |
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Glyma.04g221900 not represented in the dataset |
Glyma.04g221900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.06g143500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma04g39980 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.04g221900.1 sequence-type=CDS polypeptide=Glyma.04g221900.1.p locus=Glyma.04g221900 ID=Glyma.04g221900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCTCCACAACAAGTCCTTCGTCAAGAAAACCAAAGGTGGCAAAGTCATAAAGCAAGTGCGGGAGCACTACCTGCGCGACGATATATACTGTGGCGCACCGTTTTGCACCGTTTGCGATTCTTCCAGTGCTCGCCTCAGTGCTTCGCCTTCCATCATTCTCGTCGTCGACACCAATGTCGTTCTCAACCAGATTGATTTGCTGGAGAATCCGGCAATTGACGATGTTGTGGTGTTGTCCATTGTGTTGGAAGAGGTTAAGAACAAGAACATGTCTGTTTACAACCGTATAAGAGCTATCTGTAGCAATTCCATGAGGAAGTTCTTTGTTTTTTCCAATGAATACCACAGGGATACATATATTAAGGAAATGAGTGGGGAAACTAAAAATGATAGGAATGATAGAGCTATTCGAGTGGCTACTCAGTGGTATCAGAATCATCTTGGTGGTGCAGTAAAGGTGTTGCTTTTAACTAATGACAAAGAGAACAAAAGGAAGGCTAGTGAAGAGGGTATTTTGGCCGAAACAGTTGAGTCATATGTGAAGTCTTTGGACCAACCTGATTTACTTGATCTGCTTGTGCGGCCTGCATCTGAAGATGTGGACATGGAAGAGGTTGAAGATCTTAGACCATCCAAGAGGAAAGTCATCTACTCCGAGCATAAGCCGATGTCAGAAATTACTTCTGGTTTGCATCGTGGAATATATCATCAAGGGAAACTTCGTGTTAACCGTTATAATCCATTTGAAGCATATGTTGGGAGTGAGAGCATTGGTGATGAAATAATTATTTATGGGCGCTCAAACATGAATCGAGCATTTGATGGGGATATTGTGGCAGCTGAACTTCTGCCTCAGGACCAGTGGCAAGGAGTCTCATCTCTATCTATAGCCCATGAAGAAGACGAGGATGAGGATGAAGATGTTCATCTAGCTCCAAATAGTGCTGATGATGCACCTAGAACTATTTCTCAGCAGGGTTCTTCTGAACAAGTAAATGCTGTGCCCAGTCGTCCTTCTGGTCGTATTGTTGGCATTATAAAGAGAAACTGGCATTCGTATTGTGGATCTTTGGAGCCAATGCCTATGCCTGCAGGGAGTGGTGGTATTGCCCATGCCTTGTTTGTCTCCAAAGATCGCAGAATTCCCAAGATTCGAATCCAAACCCGTCAACTTGAGAACCTTTTGGATAAGAGGATTATTGTGGCAGTTGATTCTTGGGATCGTCAGTCTCGATATCCATCAGGCCATTATGTGCGAACTATAGGGGAGATAGGTGATAGAGATACTGAAAGCGAGGTGGTTTTGATAGAAAATGATATAAATACACGGCCATTCTCTTCACAAGTGCTGGCATGCTTGCCACCATTGCCATGGGTAGTCTCTTCTGAAGATTTGTCTAATCCAATCAGGAAGGATTTGCGTCATCTGCGTGTCTTCAGTGTGGACCCTCCAGGCTGCAAGGATATTGATGATGCACTCCACTGTCACGTCCTTCCAAATGGAAACTTTGAAGTTGGAGTTCATATTGCTGATGTGACTAATTTTGTTTATCCTGGCACTCCCCTTGATGATGAGGCTGCACAAAGGGGTACGTCTGTCTACCTTGTTGAGCGGCGGATAGACATGCTTCCCAAACCTCTTACGGAGGACATATGTTCTCTTCGTTCTGATGTGGAAAGGCTTGCATTCTCTGTCATATGGGAAATGACACCCGAAGCAGATATTATTGCCACCTCATACACAAAAAGTGTCATAAAATCTTCTGCGGCATTGTCTTATGTTGAAGCACAGGCAAGGATGGACGATAGTCGATTGATGGATCCGATTACTGCAGATTTGAGGAATATGAATAGTTTAGCTAAGAAAATGAGATTAAGGCGTATTGAGAGAGGAGCTTTGACTCTTGCATCTGCTGAGGTCAAATTTCAAATTGACACGGAGACTCATGATCCACTTGATATTGGAATGTACCAGATCCGGGAGGCCAACCAAATGGTGGAGGAGTTTATGCTTGCAGCTAATGTTTCCGTTGCACAACAAATTCTTAAAAGTTTTCCATTGTGCTCATTATTAAGGCGTCATCCAACACCAACAAGAGAGATGCTTGAACCCTTACTACGGACTGCTGCTGCAGTTGGCTTGCACTTGGATGTCTCGTCATCAAAAGCGTTGGCTGATTCTCTTGACCATGCTGTGGGTGATGATCCATACTTCAATAAGTTAATCCGTATACTGGCAACTAGGTGCATGACTCAGGCAGTTTATTTCTGCAGTGGGGATCTTAGCCCTCCAGAATATCATCATTATGGGCTTGCAGCTCTTTTGTATACCCATTTCACATCACCTATAAGAAGATATGCAGTAGATGTCATTGTGCACAGGCTACTTGCTGCTTCTTTAGGGATATCCAAGTTACCACCTGTATTTCAAGACAGTCTCCAGCTCACTAGTATTGCAGACAATTTAAATTATCGGCACAGGAATGCCCAGTATGCAGGGCGGGCATCTGTAGAGCTACATACTCTAATTTATTTCAGGAAGAGGCCTACAGACACGGAGGGTAGAATAGTGAAAATAAGATCTAATGGATTTTTTGTGTTTGTTCCCAAATATGGCATAGAAGGACCTGTATATTTGACAAAAGCAGAAAAGGGAAGTGGAGAATGGTATGTAGATGAGCAACAGCAGAAGATTAAAAAGATGGATGGTAGCCTTTCATACAACGTTTTGCAGACAGTCCAAATTCACATGGAGGTTGTGGAGCCTCAGCCTAACCGGCCAAAACTTCAGCTTACCCTCATCTAG
>Glyma.04g221900.1.p sequence-type=predicted peptide transcript=Glyma.04g221900.1 locus=Glyma.04g221900 ID=Glyma.04g221900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MLHNKSFVKKTKGGKVIKQVREHYLRDDIYCGAPFCTVCDSSSARLSASPSIILVVDTNVVLNQIDLLENPAIDDVVVLSIVLEEVKNKNMSVYNRIRAICSNSMRKFFVFSNEYHRDTYIKEMSGETKNDRNDRAIRVATQWYQNHLGGAVKVLLLTNDKENKRKASEEGILAETVESYVKSLDQPDLLDLLVRPASEDVDMEEVEDLRPSKRKVIYSEHKPMSEITSGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYGRSNMNRAFDGDIVAAELLPQDQWQGVSSLSIAHEEDEDEDEDVHLAPNSADDAPRTISQQGSSEQVNAVPSRPSGRIVGIIKRNWHSYCGSLEPMPMPAGSGGIAHALFVSKDRRIPKIRIQTRQLENLLDKRIIVAVDSWDRQSRYPSGHYVRTIGEIGDRDTESEVVLIENDINTRPFSSQVLACLPPLPWVVSSEDLSNPIRKDLRHLRVFSVDPPGCKDIDDALHCHVLPNGNFEVGVHIADVTNFVYPGTPLDDEAAQRGTSVYLVERRIDMLPKPLTEDICSLRSDVERLAFSVIWEMTPEADIIATSYTKSVIKSSAALSYVEAQARMDDSRLMDPITADLRNMNSLAKKMRLRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAQQILKSFPLCSLLRRHPTPTREMLEPLLRTAAAVGLHLDVSSSKALADSLDHAVGDDPYFNKLIRILATRCMTQAVYFCSGDLSPPEYHHYGLAALLYTHFTSPIRRYAVDVIVHRLLAASLGISKLPPVFQDSLQLTSIADNLNYRHRNAQYAGRASVELHTLIYFRKRPTDTEGRIVKIRSNGFFVFVPKYGIEGPVYLTKAEKGSGEWYVDEQQQKIKKMDGSLSYNVLQTVQIHMEVVEPQPNRPKLQLTLI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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