SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.04g220900

Feature Type:gene_model
Chromosome:Gm04
Start:49180628
stop:49184115
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g220900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G10940.1AT dual specificity protein phosphatase (DsPTP1) family protein JGI N/AIEA
GO:0006470GO-bp protein dephosphorylation EnsemblGenomesN/AIEA
GO:0006470GO-bp protein dephosphorylation JGI N/AIEA
GO:0016311GO-bp dephosphorylation EnsemblGenomesN/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0008138GO-mf protein tyrosine/serine/threonine phosphatase activity EnsemblGenomesN/AIEA
GO:0008138GO-mf protein tyrosine/serine/threonine phosphatase activity JGI N/AIEA
GO:0016791GO-mf phosphatase activity EnsemblGenomesN/AIEA
KOG1716 KOG Dual specificity phosphatase JGI N/AIEA
PTHR10343Panther 5'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNIT JGI N/AIEA
PTHR10343:SF15Panther JGI N/AIEA
PF00782PFAM Dual specificity phosphatase, catalytic domain JGI N/AIEA
PWY-6724SoyCyc9 starch degradation II Plant Metabolic Network ISS
GN7V-67424SoyCyc9-rxn 6-phosophogluco-starch phosphatase Plant Metabolic Network ISS

Expression Patterns of Glyma.04g220900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g220900
ParalogEvidenceComments
Glyma.06g145000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g220900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g39890 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g220900
>Glyma.04g220900.2 sequence-type=transcript locus=Glyma.04g220900 ID=Glyma.04g220900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AACGAGTGATTGATAGACAGTGTAGGACTTCCTTGCTCCAATATCCAAGGTTGTTTTGGTCATTATAGTTCAACATCATGTTACATAAGAACAGCCTAGAACCAACCCGACACGAGCAAAGAGAGATGGGAACCGTTAGTAACATTGGCTTCCCTTCACTATTCAGAGTTCATCTAGATTCACAAGTACTATCAAAGCATATGAAGAATAAATCATCGTGCGATTTTATGGTTCCTTCTAATCATAACTACTCTGTTAGGCTGAGTCCAATATGTTGTAAGCTATCAGAAAGTGGGATTGAGGAGAACCACACGAGCACGAGCACGGGCGAGAGGCCCTCTAAGATCAAGGACAGGATGGAGGAGTACAATATAGCTATGAAGAAAATGATGAGGAACCCTTATGAGTATCACCATGATCTGGGTATGAATTATACTCTTATAACGGACAATTTGATTGTTGGCTCCCAACCACAGAAACCTGAAGACATAGATCACCTCAAAAAGGAAGAGGGTGTGGCATACATTTTAAACTTGCAACAAGATAACGATGTTGAGTATTGGGGAGTAGACTTGCAGTCAATAATAAGAAGGTCTCGTGAACTTGAAATTAGCCACACAAGGAGACCGGCAAAAGACTTTGATCCAGATTCCTTGCAAAATGAACTACCTAAAGCAGTCTCATCCTTAGAATGGGCAATTTCTGAGGGAAAAGGAAGAGTTTATGTGCATTGTACGGCTGGACTTGGAAGAGCTCCAGCGGTGGCAATTGCTTATTTGTTCTGGTTTTGTGACATGAATCTAAATGAAGCATATGATATGCTAACTTCAAAGAGACCTTGTGGACCAAATAAAAGAGCAATACGTGGCGCTACTTATGATTTGGCTAAGAATGATCCTTGGAAGGAGCCATTTGAGACTCTTCCAGAATATGCATTTGAGGATATAGCAGATTGGGAAAGGAACTTGATTCAAGATCGTGCCCGCTCCCTTCGTGGAATTTGACAACTTCGgtttctacttatctGAGATTCCTACATAGGTTGCCACCCTTGCTGGGATGGTATCAGGTGCCATGATACTGCTCAAGTTGGAGATATTTTTTCAAGCATATTCATACTGATATGGGCACATAGCTTACAACGTGTACGAAATATTCAGTATAGTACAGACTATAGAGTGGTAAATAATCAATTTTGCGAATAATGCACCATAATTGTAGACGTCCTAATAATATCTGAGAGTGCAAAATGCCTAGTTGATCTATTGGTCTGTCAATTCTAAATAGTGTCAAAATGATGTATATAAGTAGAGGATAACCTTTATTTTTATTTTATGACGATAACTTTTGGGGTTGAGTTAACATAAACCCAAATTATGCTGGTATCATAGATCCATTAGCAGTATCATGATGATT
Coding sequences of Glyma.04g220900
>Glyma.04g220900.1 sequence-type=CDS polypeptide=Glyma.04g220900.1.p locus=Glyma.04g220900 ID=Glyma.04g220900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTACATAAGAACAGCCTAGAACCAACCCGACACGAGCAAAGAGAGATGGGAACCGTTAGTAACATTGGCTTCCCTTCACTATTCAGAGTTCATCTAGATTCACAAGTACTATCAAAGCATATGAAGAATAAATCATCGTGCGATTTTATGGTTCCTTCTAATCATAACTACTCTGTTAGGCTGAGTCCAATATGTTGTAAGCTATCAGAAAGTGGGATTGAGGAGAACCACACGAGCACGAGCACGGGCGAGAGGCCCTCTAAGATCAAGGACAGGATGGAGGAGTACAATATAGCTATGAAGAAAATGATGAGGAACCCTTATGAGTATCACCATGATCTGGGTATGAATTATACTCTTATAACGGACAATTTGATTGTTGGCTCCCAACCACAGAAACCTGAAGACATAGATCACCTCAAAAAGGAAGAGGGTGTGGCATACATTTTAAACTTGCAACAAGATAACGATGTTGAGTATTGGGGAGTAGACTTGCAGTCAATAATAAGAAGGTCTCGTGAACTTGAAATTAGCCACACAAGGAGACCGGCAAAAGACTTTGATCCAGATTCCTTGCAAAATGAACTACCTAAAGCAGTCTCATCCTTAGAATGGGCAATTTCTGAGGGAAAAGGAAGAGTTTATGTGCATTGTACGGCTGGACTTGGAAGAGCTCCAGCGGTGGCAATTGCTTATTTGTTCTGGTTTTGTGACATGAATCTAAATGAAGCATATGATATGCTAACTTCAAAGAGACCTTGTGGACCAAATAAAAGAGCAATACGTGGCGCTACTTATGATTTGGCTAAGAATGATCCTTGGAAGGAGCCATTTGAGACTCTTCCAGAATATGCATTTGAGGATATAGCAGATTGGGAAAGGAACTTGATTCAAGATCGTGCCCGCTCCCTTCGTGGAATTTGA

>Glyma.04g220900.2 sequence-type=CDS polypeptide=Glyma.04g220900.2.p locus=Glyma.04g220900 ID=Glyma.04g220900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTACATAAGAACAGCCTAGAACCAACCCGACACGAGCAAAGAGAGATGGGAACCGTTAGTAACATTGGCTTCCCTTCACTATTCAGAGTTCATCTAGATTCACAAGTACTATCAAAGCATATGAAGAATAAATCATCGTGCGATTTTATGGTTCCTTCTAATCATAACTACTCTGTTAGGCTGAGTCCAATATGTTGTAAGCTATCAGAAAGTGGGATTGAGGAGAACCACACGAGCACGAGCACGGGCGAGAGGCCCTCTAAGATCAAGGACAGGATGGAGGAGTACAATATAGCTATGAAGAAAATGATGAGGAACCCTTATGAGTATCACCATGATCTGGGTATGAATTATACTCTTATAACGGACAATTTGATTGTTGGCTCCCAACCACAGAAACCTGAAGACATAGATCACCTCAAAAAGGAAGAGGGTGTGGCATACATTTTAAACTTGCAACAAGATAACGATGTTGAGTATTGGGGAGTAGACTTGCAGTCAATAATAAGAAGGTCTCGTGAACTTGAAATTAGCCACACAAGGAGACCGGCAAAAGACTTTGATCCAGATTCCTTGCAAAATGAACTACCTAAAGCAGTCTCATCCTTAGAATGGGCAATTTCTGAGGGAAAAGGAAGAGTTTATGTGCATTGTACGGCTGGACTTGGAAGAGCTCCAGCGGTGGCAATTGCTTATTTGTTCTGGTTTTGTGACATGAATCTAAATGAAGCATATGATATGCTAACTTCAAAGAGACCTTGTGGACCAAATAAAAGAGCAATACGTGGCGCTACTTATGATTTGGCTAAGAATGATCCTTGGAAGGAGCCATTTGAGACTCTTCCAGAATATGCATTTGAGGATATAGCAGATTGGGAAAGGAACTTGATTCAAGATCGTGCCCGCTCCCTTCGTGGAATTTGA
Predicted protein sequences of Glyma.04g220900
>Glyma.04g220900.1.p sequence-type=predicted peptide transcript=Glyma.04g220900.1 locus=Glyma.04g220900 ID=Glyma.04g220900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLHKNSLEPTRHEQREMGTVSNIGFPSLFRVHLDSQVLSKHMKNKSSCDFMVPSNHNYSVRLSPICCKLSESGIEENHTSTSTGERPSKIKDRMEEYNIAMKKMMRNPYEYHHDLGMNYTLITDNLIVGSQPQKPEDIDHLKKEEGVAYILNLQQDNDVEYWGVDLQSIIRRSRELEISHTRRPAKDFDPDSLQNELPKAVSSLEWAISEGKGRVYVHCTAGLGRAPAVAIAYLFWFCDMNLNEAYDMLTSKRPCGPNKRAIRGATYDLAKNDPWKEPFETLPEYAFEDIADWERNLIQDRARSLRGI*

>Glyma.04g220900.2.p sequence-type=predicted peptide transcript=Glyma.04g220900.2 locus=Glyma.04g220900 ID=Glyma.04g220900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLHKNSLEPTRHEQREMGTVSNIGFPSLFRVHLDSQVLSKHMKNKSSCDFMVPSNHNYSVRLSPICCKLSESGIEENHTSTSTGERPSKIKDRMEEYNIAMKKMMRNPYEYHHDLGMNYTLITDNLIVGSQPQKPEDIDHLKKEEGVAYILNLQQDNDVEYWGVDLQSIIRRSRELEISHTRRPAKDFDPDSLQNELPKAVSSLEWAISEGKGRVYVHCTAGLGRAPAVAIAYLFWFCDMNLNEAYDMLTSKRPCGPNKRAIRGATYDLAKNDPWKEPFETLPEYAFEDIADWERNLIQDRARSLRGI*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo