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Report for Sequence Feature Glyma.04g217500

Feature Type:gene_model
Chromosome:Gm04
Start:48841683
stop:48847602
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g217500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G09900.2AT 26S proteasome regulatory subunit, putative (RPN5) JGI N/AIEA
GO:0043161GO-bp proteasome-mediated ubiquitin-dependent protein catabolic process EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0008541GO-cc proteasome regulatory particle, lid subcomplex EnsemblGenomesN/AIEA
GO:0031595GO-cc nuclear proteasome complex EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG1498 KOG 26S proteasome regulatory complex, subunit RPN5/PSMD12 JGI N/AIEA
PTHR10855Panther 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 JGI N/AIEA
PTHR10855:SF1Panther 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12 JGI N/AIEA
PF01399PFAM PCI domain JGI N/AIEA

Expression Patterns of Glyma.04g217500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g217500
ParalogEvidenceComments
Glyma.06g148300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g217500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g39520 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g217500
>Glyma.04g217500.1 sequence-type=CDS polypeptide=Glyma.04g217500.1.p locus=Glyma.04g217500 ID=Glyma.04g217500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTATGGAGAACGCCGGGAATTTAGAAGCGGCCATAGAACAATTGCTGAATGCGGAGAAGCAAGCGAGGCTCGCCGGCGACGTCGCCGCCACCAGAAACGCCGTCACTGAAATTTTACGGATGTGCTTCGAAGCGCGTGCCTGGAAAACCCTCAATGACCAGATTGTTCTCTTGTCCAAACGCCGTGGCCAGCTTAAGCAGGCTGTGACAGCAATGGTCCAGCAGGCTATGCAATATATTGATGAGACACCAGATCTTGAAACTCGTATAGAACTCATCAAAATCTTGAACAGTGTATCTGCAGGAAAGATATACGTTGAGATTGAGAGAGCTCGGTTGATCAAGAAACTTGCAAAAATCAAGGAAGAACAAGGACTTATAGCTGAAGCTGCTGATTTGATGCAAGAAATTGCGGTGGAAACTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCAAGAAAGATTAGTACGAGAGTGTTTGATGCTGATGTTTCAAAGGAAAAGAAAAAGCCTAAAGAAGGTGATAATGTTGTTGAAGAAGCTCCTGTTGATATACCATCTCTACCGGAGTTGAAGCGAATCTACTATGAACTAATGATTCGGTATTATTCCCATAAAAATGATTATCTTGAAATTTGCCGATGCTACAAGGCAATATATGAGATTCCATCTGTCAAAGAAAATCCTGCCGAGTGGATTCCAATCCTGAGGAAAATATGTTGGTATTTGGTTCTATCACCGCATGATCCAATGCAGTCAAGCCTTCTCAATTCTACCTTGGAGGATAAGAATCTGTCTGAGATTCCAAACTTTAAGTTACTGTTGAAACAGTTGGTCACTATGGAGGTTATCCAGTGGACAACTCTTTGGGATTCATACAAGGATGAATTTGAGAATGAGAGTAACTTAGGAAAGAATTTGGGTGAAAAAGCAGCTGAAGATCTGAGGGAAAGAGTAATTGAACATAATATTATTGTTATATCAAAATACTATGGAAAGATTACTTTGAAGAGACTTGCGGAGCTTTTGTGTCTCAGTGTTCAGAAAGCTGAGAAGCATCTTTCAGATATGGTTGTGTCTAAGGCATTGGTGGCGAAGATTGATAGACCCATGGGAATAGTTTGTTTCCAAAGAGCTAAGGATAGCAATGACGTTCTTAACTCATGGGCAGCAAACTTGGAGAGGCTGCTTGATCTTGTGGAGAAGAGCTGCCATCAAATACACAAGGAAACCATGGTGCATAAAGCTGCCTTGAAGGTTTAA
Predicted protein sequences of Glyma.04g217500
>Glyma.04g217500.1.p sequence-type=predicted peptide transcript=Glyma.04g217500.1 locus=Glyma.04g217500 ID=Glyma.04g217500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAMENAGNLEAAIEQLLNAEKQARLAGDVAATRNAVTEILRMCFEARAWKTLNDQIVLLSKRRGQLKQAVTAMVQQAMQYIDETPDLETRIELIKILNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEIAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISTRVFDADVSKEKKKPKEGDNVVEEAPVDIPSLPELKRIYYELMIRYYSHKNDYLEICRCYKAIYEIPSVKENPAEWIPILRKICWYLVLSPHDPMQSSLLNSTLEDKNLSEIPNFKLLLKQLVTMEVIQWTTLWDSYKDEFENESNLGKNLGEKAAEDLRERVIEHNIIVISKYYGKITLKRLAELLCLSVQKAEKHLSDMVVSKALVAKIDRPMGIVCFQRAKDSNDVLNSWAANLERLLDLVEKSCHQIHKETMVHKAALKV*






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