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Report for Sequence Feature Glyma.04g207900

Feature Type:gene_model
Chromosome:Gm04
Start:48041302
stop:48049634
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g207900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G63610.1AT cyclin-dependent kinase E;1 JGI N/AIEA
GO:0006468GO-bp protein phosphorylation EnsemblGenomesN/AIEA
GO:0006468GO-bp protein phosphorylation JGI N/AIEA
GO:0007346GO-bp regulation of mitotic cell cycle EnsemblGenomesN/AIEA
GO:0016592GO-cc mediator complex EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity JGI N/AIEA
GO:0004674GO-mf protein serine/threonine kinase activity EnsemblGenomesN/AIEA
GO:0004693GO-mf cyclin-dependent protein serine/threonine kinase activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
KOG0666 KOG Cyclin C-dependent kinase CDK8 JGI N/AIEA
PTHR24056Panther CELL DIVISION PROTEIN KINASE JGI N/AIEA
PTHR24056:SF83Panther JGI N/AIEA
PF00069PFAM Protein kinase domain JGI N/AIEA

Proteins Associated with Glyma.04g207900
LocusGene SymbolProtein Name
Cdk8-1 Cyclin-dependent kinase 8 gene 1

Expression Patterns of Glyma.04g207900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g207900 not represented in the dataset
Glyma.04g207900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.04g207900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g38515 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g207900
>Glyma.04g207900.1 sequence-type=CDS polypeptide=Glyma.04g207900.1.p locus=Glyma.04g207900 ID=Glyma.04g207900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAGACGACAGTGGCAGCAACCGGTCAAAGCCGGAGTGGCTGCAGCAGTATGATCTAATAGGGAAGATTGGAGAAGGCACCTACGGTCTCGTCTTCCTCGCTCGCATCAAGTCTTCCACCAATCGCGGAAAATCCATCGCCATAAAAAAATTCAAGCAATCCAAGGATGGCGATGGTGTCTCTCCCACCGCCATACGTGAAATCATGTTACTCAGGGAGATAACGCACGAGAATGTTGTGAAGCTTGTGAATGTTCACATTAATCATATGGACATGTCTCTCTATCTGGCTTTTGATTATGCAGAACACGACCTTTTTGAAATAATAAGACATCATAGGGACAAAGTCAATCAATCCATTAACCAGTATACTGTTAAATCGTTACTCTGGCAGTTGCTCAATGGACTAAACTATCTACACAGTAATTGGATAATACATCGGGACTTAAAGCCATCAAATATATTGGTTATGGGTGAAGGAGAGGAACATGGAGTTGTTAAAATTGCTGACTTTGGACTTGCAAGGATATATCAAGCACCTTTGAAGCCATTATCTGAAAATGGGGTTGTTGTTACTATTTGGTATCGTGCTCCTGAGTTGCTTCTTGGAGCAAAACATTATACCAGTGCTGTTGATATGTGGGCTGTGGGATGCATTTTTGCTGAGTTGTTGACTTTAAAGCCGCTATTCCAAGGTGCAGAAGTCAAAGCTACACCAAATCCCTTTCAGCTTGACCAACTTGACAAGATATTCAAGGTTTTAGGCCATCCCACATTAGAAAAGTGGCCTTCCTTAGCAAATCTTCCCCATTGGCAACAAGATTCACAACATATACAAGGACACAAATATGACAATGCTAGCCTATGTAGTGTTTTACAACTATCTCCAAAAAGTCCTGCATATGACCTCTTGTCAAAGATGCTTGAATATGATCCACGAAAGCGCATAACAGCAGCCCAAGCTTTGGAGCATGAGTATTTCAAAATTGAACCACTACCTGGGCGGAATGCACTTGTACCCTGCCAACCTGGAGACACATTTGTGAATTATCCCACACGTCCAGTGGATACAACAACAGATTTTGAAGGGACAGCCAACATGCAACCTTCACAGCCGGTTTCGTCTGGAGCTGCAGTTTCTGGCAACATGCCTGGTGGTCATGTTTCGAATAGATCTGTCCCTCGGCCAATGAATGTTGGTGGCATGCAGAGAATACCTCATCAGGCAATGCAGGGTTATAATCTCTCATCTCAGGCAGGGATGGGTGCTGGAATGAATCCTGGTGGCATCCCAATGCAACGAGGTGTTCCACAGCAACAGTTGAGAAGAAAAGATCAAATGGGTATGCCAGGATACCCTCCACAGCAGAAGTCAAGACGTATATAA
Predicted protein sequences of Glyma.04g207900
>Glyma.04g207900.1.p sequence-type=predicted peptide transcript=Glyma.04g207900.1 locus=Glyma.04g207900 ID=Glyma.04g207900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGDDSGSNRSKPEWLQQYDLIGKIGEGTYGLVFLARIKSSTNRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHMDMSLYLAFDYAEHDLFEIIRHHRDKVNQSINQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEHGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATPNPFQLDQLDKIFKVLGHPTLEKWPSLANLPHWQQDSQHIQGHKYDNASLCSVLQLSPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFKIEPLPGRNALVPCQPGDTFVNYPTRPVDTTTDFEGTANMQPSQPVSSGAAVSGNMPGGHVSNRSVPRPMNVGGMQRIPHQAMQGYNLSSQAGMGAGMNPGGIPMQRGVPQQQLRRKDQMGMPGYPPQQKSRRI*






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