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Report for Sequence Feature Glyma.04g207600

Feature Type:gene_model
Chromosome:Gm04
Start:48004764
stop:48009770
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g207600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G52950.1AT CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0030554GO-mf adenyl nucleotide binding JGI N/AIEA
PTHR11911Panther INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED JGI N/AIEA
PTHR11911:SF10Panther JGI N/AIEA
PTHR13780Panther AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT JGI N/AIEA
PTHR13780:SF15Panther JGI N/AIEA
PF00564PFAM PB1 domain JGI N/AIEA
PF00571PFAM CBS domain JGI N/AIEA

Expression Patterns of Glyma.04g207600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g207600
ParalogEvidenceComments
Glyma.06g158200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g207600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g38480 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g207600
>Glyma.04g207600.2 sequence-type=transcript locus=Glyma.04g207600 ID=Glyma.04g207600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAGAGGGCCCCGCAGAACCCTAACCTCCTCTGTGTCGTGATTTGACATGAAGAAGAGAGAGAGAGAAAGAGGATCATAAAAATTTGGCACATTCACACAGAAAAAAATTAAGCGCGAAATCTGATTAACATTCATTCATCGAAACACAGAGAGAAGAAGAAGAATGAGCAGCACTGAAACTTCCTCCATCAACAAAAAGACCAAACGCCATCAAAAGAAGTCCCTCTCCCTCCCCGCCCGTAACGGAATCAACCCTCCGGATGATGGCGGAGAAAGAACCGTTAAGAAGCTTCGGTTGTCTAAGGCGCTCACCATCCCCGACGGAACCACCGTCTCCGAGGCCTGCAGGCGCATGGCTGCTCGCCGCATCGACGCCGTTTTGCTAACTGATTCCAACGCTCTGCTTGCCGGAATTCTCACTGACAAGGATGTGGCTACTAGAGTCGTCACAGAGGGGCTGAAGCCGGAGGAGACGACGGTGTCGAAAGTAATGACGCGGAATCCCATCTTTGTCACGTCGGATACGCTCGCCATCGATGCGCTTCAGAAGATGATTCAGGGTAAATTCAGACACCTCCCTGTCGTGGAAAATGGTGAAGTCATTGCCATGCTGGATATTACCAAATGCCTTTATGATGCCATATCTAGGATGGAGAGCGCTACTCAACACGGGAGTGCCGTTGCTGCAGCGGTTGAGGGAGTGGAACTTCAGCAAACTACTCCAAATACTTTCATTGAAACATTGAGAGAGCGCGTGTTCAAACCTTCCCTGTCAACTATAGTCGATGAAAATACAAAGGTTGCTATTGCATTAGCATCAGATCCTGTCTACGTGGCTGCAAAAAAGATGCGGGAGTTGCATGTAAATTCAGCTGTGATTGTGATGGAAAACAAGATTCAGGGGATACTTACTTCAAAGGACATCCTTATGCGCGTGGTGGCTCAAAATCTTTCCCCCGAGTCGGCTCTTCTGGAAAAGGTGATGACTCCAAACCCACAATGTGCATCTCTAGAGACAACAATTCTTGATGCACTGCATATGATGCATAATGGGAAGTTCTTACATCTTCCTGTGGTGGACAGAGATGGAAATGTTACTGCTTGTTTGGATGTTTTGCAGATAACTCATGCTGCAATTTCTCTGGTTGAAAGTAGTCCTGGAGCATCCAATGATGCGGCAAACACAGTTATGCAAAAATTTTGGGACTCGGCTTTTGCTCTAGAGCCGCCTGAAGATTTTGACACCCATAGTGAAGCCTCTGGACAGCTGACTTTGGATGGGGCAGATACCACAAAGTCTACATATCAATCTGTAGGTTTTGGAAATTCATTTGCTTTTAAATTTGACGATCACAATGGCCATGTTCATCGATTCTACTGTGGTGCTGAACATCAAGAAGAACTTCTATCTGCTGTCATGCAAAGAATTGGTGATGTTAATGATGGAGAACACCCTACAATGCTGTATAAGGACGATGATGGCGATAAAATTATTATTGCGACTGATAACGATCTTGTGGCTGCCGTCAGTTATGCTAGGTCTGCAGGACTGAAGGCTTTAAAGTTGGATTTGGAGTTTCCCAATTCAACCAAACCAACAAAACTGCAACCTGGTACAGCCACTATACAGAAAACCAGTACATTGTCTCTCCGTTCTGGTATTTTTGCAGGTGTTGTTGTTCTAACGAGCATTAGTGTATTGGTGTACTTAAAGCGCTCTAGACAGTAATATGTTTACCACCTTGAAAACAAAACATGCTATAATCTTACACTATGAATTCCAAAAATAGGTGGATGATGTGGAGTTTCTCTAATCACCTGTTTTTGATTATCTTTTTCTTTTTGGGTCACTGATGTAATTAGAACCAAAGTTATAGTCGTGGCATGCAAAACTGAAGTGTCACCATGTTCTTCTCAATTAAGTTACTTGTAATTCCATATATAATATATTTATCAATAACTTTCA
Coding sequences of Glyma.04g207600
>Glyma.04g207600.1 sequence-type=CDS polypeptide=Glyma.04g207600.1.p locus=Glyma.04g207600 ID=Glyma.04g207600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGCAGCACTGAAACTTCCTCCATCAACAAAAAGACCAAACGCCATCAAAAGAAGTCCCTCTCCCTCCCCGCCCGTAACGGAATCAACCCTCCGGATGATGGCGGAGAAAGAACCGTTAAGAAGCTTCGGTTGTCTAAGGCGCTCACCATCCCCGACGGAACCACCGTCTCCGAGGCCTGCAGGCGCATGGCTGCTCGCCGCATCGACGCCGTTTTGCTAACTGATTCCAACGCTCTGCTTGCCGGAATTCTCACTGACAAGGATGTGGCTACTAGAGTCGTCACAGAGGGGCTGAAGCCGGAGGAGACGACGGTGTCGAAAGTAATGACGCGGAATCCCATCTTTGTCACGTCGGATACGCTCGCCATCGATGCGCTTCAGAAGATGATTCAGGGTAAATTCAGACACCTCCCTGTCGTGGAAAATGGTGAAGTCATTGCCATGCTGGATATTACCAAATGCCTTTATGATGCCATATCTAGGATGGAGAGCGCTACTCAACACGGGAGTGCCGTTGCTGCAGCGGTTGAGGGAGTGGAACTTCAGCAAACTAGTAATGCTCCAAATACTTTCATTGAAACATTGAGAGAGCGCGTGTTCAAACCTTCCCTGTCAACTATAGTCGATGAAAATACAAAGGTTGCTATTGCATTAGCATCAGATCCTGTCTACGTGGCTGCAAAAAAGATGCGGGAGTTGCATGTAAATTCAGCTGTGATTGTGATGGAAAACAAGATTCAGGGGATACTTACTTCAAAGGACATCCTTATGCGCGTGGTGGCTCAAAATCTTTCCCCCGAGTCGGCTCTTCTGGAAAAGGTGATGACTCCAAACCCACAATGTGCATCTCTAGAGACAACAATTCTTGATGCACTGCATATGATGCATAATGGGAAGTTCTTACATCTTCCTGTGGTGGACAGAGATGGAAATGTTACTGCTTGTTTGGATGTTTTGCAGATAACTCATGCTGCAATTTCTCTGGTTGAAAGTAGTCCTGGAGCATCCAATGATGCGGCAAACACAGTTATGCAAAAATTTTGGGACTCGGCTTTTGCTCTAGAGCCGCCTGAAGATTTTGACACCCATAGTGAAGCCTCTGGACAGCTGACTTTGGATGGGGCAGATACCACAAAGTCTACATATCAATCTGTAGGTTTTGGAAATTCATTTGCTTTTAAATTTGACGATCACAATGGCCATGTTCATCGATTCTACTGTGGTGCTGAACATCAAGAAGAACTTCTATCTGCTGTCATGCAAAGAATTGGTGATGTTAATGATGGAGAACACCCTACAATGCTGTATAAGGACGATGATGGCGATAAAATTATTATTGCGACTGATAACGATCTTGTGGCTGCCGTCAGTTATGCTAGGTCTGCAGGACTGAAGGCTTTAAAGTTGGATTTGGAGTTTCCCAATTCAACCAAACCAACAAAACTGCAACCTGGTACAGCCACTATACAGAAAACCAGTACATTGTCTCTCCGTTCTGGTATTTTTGCAGGTGTTGTTGTTCTAACGAGCATTAGTGTATTGGTGTACTTAAAGCGCTCTAGACAGTAA

>Glyma.04g207600.2 sequence-type=CDS polypeptide=Glyma.04g207600.2.p locus=Glyma.04g207600 ID=Glyma.04g207600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGCAGCACTGAAACTTCCTCCATCAACAAAAAGACCAAACGCCATCAAAAGAAGTCCCTCTCCCTCCCCGCCCGTAACGGAATCAACCCTCCGGATGATGGCGGAGAAAGAACCGTTAAGAAGCTTCGGTTGTCTAAGGCGCTCACCATCCCCGACGGAACCACCGTCTCCGAGGCCTGCAGGCGCATGGCTGCTCGCCGCATCGACGCCGTTTTGCTAACTGATTCCAACGCTCTGCTTGCCGGAATTCTCACTGACAAGGATGTGGCTACTAGAGTCGTCACAGAGGGGCTGAAGCCGGAGGAGACGACGGTGTCGAAAGTAATGACGCGGAATCCCATCTTTGTCACGTCGGATACGCTCGCCATCGATGCGCTTCAGAAGATGATTCAGGGTAAATTCAGACACCTCCCTGTCGTGGAAAATGGTGAAGTCATTGCCATGCTGGATATTACCAAATGCCTTTATGATGCCATATCTAGGATGGAGAGCGCTACTCAACACGGGAGTGCCGTTGCTGCAGCGGTTGAGGGAGTGGAACTTCAGCAAACTACTCCAAATACTTTCATTGAAACATTGAGAGAGCGCGTGTTCAAACCTTCCCTGTCAACTATAGTCGATGAAAATACAAAGGTTGCTATTGCATTAGCATCAGATCCTGTCTACGTGGCTGCAAAAAAGATGCGGGAGTTGCATGTAAATTCAGCTGTGATTGTGATGGAAAACAAGATTCAGGGGATACTTACTTCAAAGGACATCCTTATGCGCGTGGTGGCTCAAAATCTTTCCCCCGAGTCGGCTCTTCTGGAAAAGGTGATGACTCCAAACCCACAATGTGCATCTCTAGAGACAACAATTCTTGATGCACTGCATATGATGCATAATGGGAAGTTCTTACATCTTCCTGTGGTGGACAGAGATGGAAATGTTACTGCTTGTTTGGATGTTTTGCAGATAACTCATGCTGCAATTTCTCTGGTTGAAAGTAGTCCTGGAGCATCCAATGATGCGGCAAACACAGTTATGCAAAAATTTTGGGACTCGGCTTTTGCTCTAGAGCCGCCTGAAGATTTTGACACCCATAGTGAAGCCTCTGGACAGCTGACTTTGGATGGGGCAGATACCACAAAGTCTACATATCAATCTGTAGGTTTTGGAAATTCATTTGCTTTTAAATTTGACGATCACAATGGCCATGTTCATCGATTCTACTGTGGTGCTGAACATCAAGAAGAACTTCTATCTGCTGTCATGCAAAGAATTGGTGATGTTAATGATGGAGAACACCCTACAATGCTGTATAAGGACGATGATGGCGATAAAATTATTATTGCGACTGATAACGATCTTGTGGCTGCCGTCAGTTATGCTAGGTCTGCAGGACTGAAGGCTTTAAAGTTGGATTTGGAGTTTCCCAATTCAACCAAACCAACAAAACTGCAACCTGGTACAGCCACTATACAGAAAACCAGTACATTGTCTCTCCGTTCTGGTATTTTTGCAGGTGTTGTTGTTCTAACGAGCATTAGTGTATTGGTGTACTTAAAGCGCTCTAGACAGTAA
Predicted protein sequences of Glyma.04g207600
>Glyma.04g207600.1.p sequence-type=predicted peptide transcript=Glyma.04g207600.1 locus=Glyma.04g207600 ID=Glyma.04g207600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSTETSSINKKTKRHQKKSLSLPARNGINPPDDGGERTVKKLRLSKALTIPDGTTVSEACRRMAARRIDAVLLTDSNALLAGILTDKDVATRVVTEGLKPEETTVSKVMTRNPIFVTSDTLAIDALQKMIQGKFRHLPVVENGEVIAMLDITKCLYDAISRMESATQHGSAVAAAVEGVELQQTSNAPNTFIETLRERVFKPSLSTIVDENTKVAIALASDPVYVAAKKMRELHVNSAVIVMENKIQGILTSKDILMRVVAQNLSPESALLEKVMTPNPQCASLETTILDALHMMHNGKFLHLPVVDRDGNVTACLDVLQITHAAISLVESSPGASNDAANTVMQKFWDSAFALEPPEDFDTHSEASGQLTLDGADTTKSTYQSVGFGNSFAFKFDDHNGHVHRFYCGAEHQEELLSAVMQRIGDVNDGEHPTMLYKDDDGDKIIIATDNDLVAAVSYARSAGLKALKLDLEFPNSTKPTKLQPGTATIQKTSTLSLRSGIFAGVVVLTSISVLVYLKRSRQ*

>Glyma.04g207600.2.p sequence-type=predicted peptide transcript=Glyma.04g207600.2 locus=Glyma.04g207600 ID=Glyma.04g207600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSTETSSINKKTKRHQKKSLSLPARNGINPPDDGGERTVKKLRLSKALTIPDGTTVSEACRRMAARRIDAVLLTDSNALLAGILTDKDVATRVVTEGLKPEETTVSKVMTRNPIFVTSDTLAIDALQKMIQGKFRHLPVVENGEVIAMLDITKCLYDAISRMESATQHGSAVAAAVEGVELQQTTPNTFIETLRERVFKPSLSTIVDENTKVAIALASDPVYVAAKKMRELHVNSAVIVMENKIQGILTSKDILMRVVAQNLSPESALLEKVMTPNPQCASLETTILDALHMMHNGKFLHLPVVDRDGNVTACLDVLQITHAAISLVESSPGASNDAANTVMQKFWDSAFALEPPEDFDTHSEASGQLTLDGADTTKSTYQSVGFGNSFAFKFDDHNGHVHRFYCGAEHQEELLSAVMQRIGDVNDGEHPTMLYKDDDGDKIIIATDNDLVAAVSYARSAGLKALKLDLEFPNSTKPTKLQPGTATIQKTSTLSLRSGIFAGVVVLTSISVLVYLKRSRQ*






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