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Report for Sequence Feature Glyma.04g205500

Feature Type:gene_model
Chromosome:Gm04
Start:47813401
stop:47817245
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g205500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G03795.1AT Exostosin family protein JGI N/AIEA
KOG1021 KOG Acetylglucosaminyltransferase EXT1/exostosin 1 JGI N/AIEA
PTHR11062Panther EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERASE)-RELATED JGI N/AIEA
PTHR11062:SF1Panther JGI N/AIEA
PF03016PFAM Exostosin family JGI N/AIEA
PWY-5980SoyCyc9 xylogalacturonan biosynthesis Plant Metabolic Network ISS
GN7V-43676SoyCyc9-rxn xylogalacturonan β-1,3-xylosyltransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.04g205500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g205500
ParalogEvidenceComments
Glyma.06g160000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g205500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g38280 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g205500
>Glyma.04g205500.1 sequence-type=CDS polypeptide=Glyma.04g205500.1.p locus=Glyma.04g205500 ID=Glyma.04g205500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGATGGAAGATTTACAAGTTTGTCCGACTTATTCTAAAGATTTGTTGCAAGGAAATCGTAGATGTAGAGATAAAGTTCTTGTTTCTTGTCGGAGTCTTCTCGCTCCAAATTTCTCTTCTTCACCTTGGAGGGGAGAACCAACTTCCTCTTTGGATACAGAAAACAAAAGTGCTTCAATATTACATGATGATCATGAGGGAGAAGCTCCATCTCCAACTGCATTTGACTCGGATCATCATGGTCCTCATCGAGAAATATTCAATAAGGGTGATGAAAATGACTCCAAGTTTAAGCATAAAGGTACGGATAAAGGGTACCTTACAGATCACAAGTACACCAAGTTAGGAAGAATTGAAGCAAGATTGGCTAAAGCAAGGTATTCCATCAGAGAAGCTAGCAAAATTCGAAATTTGACATCAAACCTCCAAGATCCAGACTATGTTCCTCAAGGTTCAATTTACAGAAACGTCAATGCCTTTCAGAGGAGTTACCTAGAGATGGAAAAGGTTTTCAAGATTTTTGTGTATGAAGAAGGGGAGCCACCGTTGTTCCACAATGGTCTAAGCAAAGACATATATGCCACTGAGGGGAGATTCATACATGAAATGGAAAAGGGGAGGTACTATCGTACTTATGATCCAGATGAAGCTTTTGTGTATTATCTGCCCTTTATGGGGTTTATGTTGGTCGAATATGTGTATGATCGTGGCTCCAATTATAATCTAGATCCCCTTGGCCTTGTTGTAAAAGACTACATACAGGTTATAGCCCATAAACATCCCTTCTGGAATCGATCCCTTGGCTATGATCACTTCATGCTCTCTTGCCACGATTGGGGTCCGCTTGTATCTAGTTACGTGGATCACTTCTACAACAATGCTATAAGGGTTCTATGCAACGCAAATGTATCTGAAGGATTCAAGCCTGCAAAGGATGTCTCATTTCCTGAGATTAAACTTATTAAGGGGGAAGTCACAAATCTACTACTCCAAAGTACATGGAAAAACAAAGACCAAGATATGCAAATCTATGAGGAACTTCCTGAGGGAATCTCTTACTACACAAAGCTTAGAAGCAGCAAGTTTTGCCTCTGCCCAAGTGGTTATGAAGTAGCTAGTCCCAGAGTAGTGAAAGCAATATTTGCAGAATGTGTGCCAGTTCTGATTTCTGACGGCTATGTTCCACCCTTTAGTGATGTTTTGAATTGGAATTCATTTTCAGTTCAAGTGGATGTGAAGGACATTCCAAATATCAAAAAGATACTCATGGGAATTTCAGAAAGGCAGTACTTGAGGATGTACAAGAGGGTGAAACAAGTGCAAAGACATTTTGTGCCTAATGAGCCCCCAAAGAGGTATGATATGTTCCATATGACTGTCCATTCCATTTGGCTCAGGAGGTTGAATATCCATATTCAAGACCAGTAA
Predicted protein sequences of Glyma.04g205500
>Glyma.04g205500.1.p sequence-type=predicted peptide transcript=Glyma.04g205500.1 locus=Glyma.04g205500 ID=Glyma.04g205500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLMEDLQVCPTYSKDLLQGNRRCRDKVLVSCRSLLAPNFSSSPWRGEPTSSLDTENKSASILHDDHEGEAPSPTAFDSDHHGPHREIFNKGDENDSKFKHKGTDKGYLTDHKYTKLGRIEARLAKARYSIREASKIRNLTSNLQDPDYVPQGSIYRNVNAFQRSYLEMEKVFKIFVYEEGEPPLFHNGLSKDIYATEGRFIHEMEKGRYYRTYDPDEAFVYYLPFMGFMLVEYVYDRGSNYNLDPLGLVVKDYIQVIAHKHPFWNRSLGYDHFMLSCHDWGPLVSSYVDHFYNNAIRVLCNANVSEGFKPAKDVSFPEIKLIKGEVTNLLLQSTWKNKDQDMQIYEELPEGISYYTKLRSSKFCLCPSGYEVASPRVVKAIFAECVPVLISDGYVPPFSDVLNWNSFSVQVDVKDIPNIKKILMGISERQYLRMYKRVKQVQRHFVPNEPPKRYDMFHMTVHSIWLRRLNIHIQDQ*






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