Glyma.04g201000

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Report for Sequence Feature Glyma.04g201000

Feature Type:	gene_model
Chromosome:	Gm04
Start:	47375498
stop:	47382776
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.04g201000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G50930.1	AT	Histone superfamily protein	JGI	N/A	IEA
GO:0000712	GO-bp	resolution of meiotic recombination intermediates	EnsemblGenomes	N/A	IEA
GO:0006312	GO-bp	mitotic recombination	EnsemblGenomes	N/A	IEA
GO:0031297	GO-bp	replication fork processing	EnsemblGenomes	N/A	IEA
GO:0036297	GO-bp	interstrand cross-link repair	EnsemblGenomes	N/A	IEA
GO:0043240	GO-cc	Fanconi anaemia nuclear complex	EnsemblGenomes	N/A	IEA
GO:0071821	GO-cc	FANCM-MHF complex	EnsemblGenomes	N/A	IEA
GO:0003682	GO-mf	chromatin binding	EnsemblGenomes	N/A	IEA
GO:0003690	GO-mf	double-stranded DNA binding	EnsemblGenomes	N/A	IEA
GO:0046982	GO-mf	protein heterodimerization activity	EnsemblGenomes	N/A	IEA
PTHR22980	Panther	CORTISTATIN	JGI	N/A	IEA
PF02291	PFAM	Transcription initiation factor IID, 31kD subunit	JGI	N/A	IEA

Expression Patterns of Glyma.04g201000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g201000 not represented in the dataset	Glyma.04g201000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.04g201000

Paralog	Evidence	Comments
Glyma.06g164400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g201000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma04g37800	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.04g201000

Limit To All Plant Sequences

>Glyma.04g201000.2 sequence-type=transcript locus=Glyma.04g201000 ID=Glyma.04g201000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCCAATCCGCAACGGAGTTTGGGCTGATAGTATATCAGCTCAATAGAGTCCATTAATATTCTATTTTCCCTCCTCCCTTGTTCGCGAGATTCGGTTTCCCTCCATTTCAAACAAACTCGACGATGGAAAGCGTGGACGCGAACAGCGAAGTCGAAAACGACGCGGAAATGAAGCTCTTGAGAGATAAATTCAGGCTCTCCGCAATCTCCATCATCGAATCTCAAGCAAAACAAAACGGCATGGAAGTATCAAAAGTCGTAGTCACTTGCGTTGCGGATTTGGCCTTCAAGTATACGGAGCGCCTGGCTAGGGATCTTCATCTATTTGCGCAGCATGCGAATCGTAAATCTGTAAATATGGAAGATGTGATACTTTGTGGACATAGGAATGAACATGTATCTGGCATGTTGAGGAGCTTCTCCAATGATTTAAAAGCCAAGGATCCTCAATCTGAAAGGAAGCGAAAGAAAGAACCCAAAAAGAACGACAAAGGAACCGCTTAGCGCATATGCCTGATGCATATATATGGTCCTAGGAACATATTTTGTGTGCAGAGTTTTATGATACACTCAACCGTAGAAGCGACAGACACATGGAAAAAGCATGTTGGCCTGCTACTTTCTGATACTCTGTACTTTTGGCACCTTCTCATCTTATCTTACATGCTAGCATTGAGCAATTGAGTGCTTCCTCCATTTTTTTTTATCAACTTTTAAATGTTTTTTTTTCTTAGTTAACATTTTTATTTTTTATTTTTGTAAGTTTATTTTTTTATTTTAGTCCATCTATCTAAATTGGCATTTTTTAATTTTAATCTCTT

>Glyma.04g201000.3 sequence-type=transcript locus=Glyma.04g201000 ID=Glyma.04g201000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CGCGAGATTCGGTTTCCCTCCATTTCAAACAAACTCGACGATGGAAAGCGTGGACGCGAACAGCGAAGTCGAAAACGACGCGGAAATGAAGCTCTTGAGAGATAAATTCAGGCTCTCCGCAATCTCCATCATCGAATCTCAAGCAAAACAAAACGGCATGGAAGTATCAAAAGTCGTAGTCACTTGCGTTGCGGATTTGGCCTTCAAGTATACGGAGCGCCTGGCTAGGGATCTTCATCTATTTGCGCAGCATGCGAATCGTAAATCTGTAAATATGGAAGATGTGATACTTTGTGGACATAGGAATGAACATGTATCTGGCATGTTGAGGAGCTTCTCCAATGATTTAAAAGCCAAGGATCCTCAATCTGAAAGGAAGCGAAAGAAAGAACCCAAAAAGAACGACAAAGGAACCGCTTAGCGCATATGCCTGATGCATATATATGGTCCTAGGAACATATTTTGATGGCGGGAAAATTTTCATGTCTTTGCTACGTTACGGTATTGCAATTGTAATGCGCGCAGTTCAATGTATGTCTGATGAGAATCTTGAAATTTGAAGTGTGCAGAGTTTTATGATACACTCAACCGTAGAAGCGACAGACACATGGAAAAAGCATGTTGGCCTGCTACTTTCTGATACTCTGTACTTTTGGCACCTTCTCATCTTATCTTACATGCTAGCATTGAGCAATTGAGTGCTTCCTCCATTTTTTTTTATCAACTTTTAAATGTTTTTTTTTCTTAGTTAACATTTTTATTTTTTATTTTTGTAAGTTTATTTTTTTATTTTAGTCCATCTATCTAAATTGGCATTTTTTAATTTTAATCTCTT

Coding sequences of Glyma.04g201000

Limit To All Plant Sequences

>Glyma.04g201000.1 sequence-type=CDS polypeptide=Glyma.04g201000.1.p locus=Glyma.04g201000 ID=Glyma.04g201000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAAGCGTGGACGCGAACAGCGAAGTCGAAAACGACGCGGAAATGAAGCTCTTGAGAGATAAATTCAGGCTCTCCGCAATCTCCATCATCGAATCTCAAGCAAAACAAAACGGCATGGAAGTATCAAAAGTCGTAGTCACTTGCGTTGCGGATTTGGCCTTCAAGTATACGGAGCGCCTGGCTAGGGATCTTCATCTATTTGCGCAGCATGCGAATCGTAAATCTGTAAATATGGAAGATGTGATACTTTGTGGACATAGGAATGAACATGTATCTGGCATGTTGAGGAGCTTCTCCAATGATTTAAAAGCCAAGGATCCTCAATCTGAAAGGAAGCGAAAGAAAGAACCCAAAAAGAACGACAAAGGAACCGCTTAG

>Glyma.04g201000.2 sequence-type=CDS polypeptide=Glyma.04g201000.2.p locus=Glyma.04g201000 ID=Glyma.04g201000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAAGCGTGGACGCGAACAGCGAAGTCGAAAACGACGCGGAAATGAAGCTCTTGAGAGATAAATTCAGGCTCTCCGCAATCTCCATCATCGAATCTCAAGCAAAACAAAACGGCATGGAAGTATCAAAAGTCGTAGTCACTTGCGTTGCGGATTTGGCCTTCAAGTATACGGAGCGCCTGGCTAGGGATCTTCATCTATTTGCGCAGCATGCGAATCGTAAATCTGTAAATATGGAAGATGTGATACTTTGTGGACATAGGAATGAACATGTATCTGGCATGTTGAGGAGCTTCTCCAATGATTTAAAAGCCAAGGATCCTCAATCTGAAAGGAAGCGAAAGAAAGAACCCAAAAAGAACGACAAAGGAACCGCTTAG

>Glyma.04g201000.3 sequence-type=CDS polypeptide=Glyma.04g201000.3.p locus=Glyma.04g201000 ID=Glyma.04g201000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAAGCGTGGACGCGAACAGCGAAGTCGAAAACGACGCGGAAATGAAGCTCTTGAGAGATAAATTCAGGCTCTCCGCAATCTCCATCATCGAATCTCAAGCAAAACAAAACGGCATGGAAGTATCAAAAGTCGTAGTCACTTGCGTTGCGGATTTGGCCTTCAAGTATACGGAGCGCCTGGCTAGGGATCTTCATCTATTTGCGCAGCATGCGAATCGTAAATCTGTAAATATGGAAGATGTGATACTTTGTGGACATAGGAATGAACATGTATCTGGCATGTTGAGGAGCTTCTCCAATGATTTAAAAGCCAAGGATCCTCAATCTGAAAGGAAGCGAAAGAAAGAACCCAAAAAGAACGACAAAGGAACCGCTTAG

Predicted protein sequences of Glyma.04g201000

Limit To All Plant Sequences

>Glyma.04g201000.1.p sequence-type=predicted peptide transcript=Glyma.04g201000.1 locus=Glyma.04g201000 ID=Glyma.04g201000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MESVDANSEVENDAEMKLLRDKFRLSAISIIESQAKQNGMEVSKVVVTCVADLAFKYTERLARDLHLFAQHANRKSVNMEDVILCGHRNEHVSGMLRSFSNDLKAKDPQSERKRKKEPKKNDKGTA*

>Glyma.04g201000.2.p sequence-type=predicted peptide transcript=Glyma.04g201000.2 locus=Glyma.04g201000 ID=Glyma.04g201000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MESVDANSEVENDAEMKLLRDKFRLSAISIIESQAKQNGMEVSKVVVTCVADLAFKYTERLARDLHLFAQHANRKSVNMEDVILCGHRNEHVSGMLRSFSNDLKAKDPQSERKRKKEPKKNDKGTA*

>Glyma.04g201000.3.p sequence-type=predicted peptide transcript=Glyma.04g201000.3 locus=Glyma.04g201000 ID=Glyma.04g201000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MESVDANSEVENDAEMKLLRDKFRLSAISIIESQAKQNGMEVSKVVVTCVADLAFKYTERLARDLHLFAQHANRKSVNMEDVILCGHRNEHVSGMLRSFSNDLKAKDPQSERKRKKEPKKNDKGTA*

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