Glyma.04g195700

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Report for Sequence Feature Glyma.04g195700

Feature Type:	gene_model
Chromosome:	Gm04
Start:	46749537
stop:	46751333
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.04g195700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G67340.1	AT	HCP-like superfamily protein with MYND-type zinc finger	JGI	N/A	IEA
GO:0005515	GO-mf	protein binding	EnsemblGenomes	N/A	IEA
PTHR12298	Panther	PCDC2 (PROGRAMMED CELL DEATH PROTEIN 2)-RELATED	JGI	N/A	IEA
PF01753	PFAM	MYND finger	JGI	N/A	IEA
PF08238	PFAM	Sel1 repeat	JGI	N/A	IEA

Expression Patterns of Glyma.04g195700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.04g195700

Paralog	Evidence	Comments
Glyma.06g170100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g195700 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma04g37220	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.04g195700

Limit To All Plant Sequences

>Glyma.04g195700.1 sequence-type=CDS polypeptide=Glyma.04g195700.1.p locus=Glyma.04g195700 ID=Glyma.04g195700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGAAGGCCTTGCAAACATTCTAAGAAGAAACATGATCTCTTTGAATGTCTCCCTGACGATCTCCTTGTCCTTATTCTTTCTAAGCTCAGCTCCACCGCTTCTTCTCCTTCTGATTTCATCAACATCATCTTAACATGCAAGAGGTTAAACCGGTTAGGCCTGCACCGTCTTGTGTTATCCAAAGCTGCCTCTAAACTATTCGCCATAAAACCGAAAAATTGGTCGGAATATGCTCACTCTTTTCTCAAACACTGCGCTAACGCCGGTAACGTGGATGCCTGTTACACTCTCGGAATGATCCGATTTTACTGTTTGAAAAATCGAGGGAGCGGACTCTCGTTAATGGCGAAGGCGGCCATGAAGCTGCACGCGCCGGCTCTGTACTCGCTGGCGGTGATTCAGTTCAACGGCAGCGGCGGTTCGAAGCGCGACAAGGATCTACGCGCGGGCGTGGCCTTGTCGGCGCGTGCGTCGTTACTCGGCCACATCGACGCGCTTCGGGAGTTAGGCCATTGCCTTCAAGACGGTTACGGCGTGCGGCAGAACGTCACGGAGGGGAGGCGGCTACTCGTGCAGGCCAACGTGCGCGAGCTCGCGTATGTCCTACGCGCCGTGGCGCCTTCGCGCTGCTACGAGACCTCGCTGCTGACGTGGCGCGCGCTGAGATGTCAGAGAAACAACAACAACAACAACGCGGTGGTGGCATGTCCTTTGCTGAGTGATTATGGTTACAACGTGGCGGCGCCGGAGGTGCAGCCGGCGAATTGGTTTCTGAGAGAGTGGTTTGAGTCCGGTAAGGGAAAATTGGAGGAAGGACTAAGGCTTTGCGCGCACATTGGGTGTGGCCGACCGGAGACGCGGCCGCACGAGTTTCGCCGGTGTTCGGTTTGCGGCAAAGTGAATTACTGTTCTCGTGGATGTCAGGCGCTGGATTGGAAGTTGCGGCATAAGATGGAGTGTTCGCCGGTGGAAATGTACGATGGTGGTGTGGATGGAGAGAATGAGTTTGTGGTCCCAAACGATGCCGTTTGA

Predicted protein sequences of Glyma.04g195700

Limit To All Plant Sequences

>Glyma.04g195700.1.p sequence-type=predicted peptide transcript=Glyma.04g195700.1 locus=Glyma.04g195700 ID=Glyma.04g195700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRRPCKHSKKKHDLFECLPDDLLVLILSKLSSTASSPSDFINIILTCKRLNRLGLHRLVLSKAASKLFAIKPKNWSEYAHSFLKHCANAGNVDACYTLGMIRFYCLKNRGSGLSLMAKAAMKLHAPALYSLAVIQFNGSGGSKRDKDLRAGVALSARASLLGHIDALRELGHCLQDGYGVRQNVTEGRRLLVQANVRELAYVLRAVAPSRCYETSLLTWRALRCQRNNNNNNAVVACPLLSDYGYNVAAPEVQPANWFLREWFESGKGKLEEGLRLCAHIGCGRPETRPHEFRRCSVCGKVNYCSRGCQALDWKLRHKMECSPVEMYDGGVDGENEFVVPNDAV*

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