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Report for Sequence Feature Glyma.04g193400

Feature Type:gene_model
Chromosome:Gm04
Start:46504406
stop:46507455
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g193400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G13440.1AT glyceraldehyde-3-phosphate dehydrogenase C2 JGI N/AIEA
GO:0006006GO-bp glucose metabolic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016620GO-mf oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor EnsemblGenomesN/AIEA
GO:0016620GO-mf oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor JGI N/AIEA
GO:0050661GO-mf NADP binding EnsemblGenomesN/AIEA
GO:0051287GO-mf NAD binding EnsemblGenomesN/AIEA
KOG0657 KOG Glyceraldehyde 3-phosphate dehydrogenase JGI N/AIEA
PTHR10836Panther GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE JGI N/AIEA
PF00044PFAM Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JGI N/AIEA
PF02800PFAM Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JGI N/AIEA
GLUCONEO-PWYSoyCyc9 gluconeogenesis I Plant Metabolic Network ISS
GLYCOLYSISSoyCyc9 glycolysis I (from glucose 6-phosphate) Plant Metabolic Network ISS
PWY-1042SoyCyc9 glycolysis IV (plant cytosol) Plant Metabolic Network ISS
PWY-5464SoyCyc9 superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle Plant Metabolic Network ISS
PWY-5484SoyCyc9 glycolysis II (from fructose 6-phosphate) Plant Metabolic Network ISS
PWY-7345SoyCyc9 superpathway of anaerobic sucrose degradation Plant Metabolic Network ISS
SUCSYN-PWYSoyCyc9 sucrose biosynthesis I (from photosynthesis) Plant Metabolic Network ISS
GN7V-51082SoyCyc9-rxn glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) Plant Metabolic Network ISS

Expression Patterns of Glyma.04g193400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g193400
ParalogEvidenceComments
Glyma.06g172600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g193400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g36860 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g193400
>Glyma.04g193400.1 sequence-type=CDS polypeptide=Glyma.04g193400.1.p locus=Glyma.04g193400 ID=Glyma.04g193400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGCAAGGTCAAGATCGGAATCAACGGATTTGGAAGAATTGGCCGTTTGGTTGCCAGAGTCGCTCTGCAAAGAGACGATGTGGAGCTCGTTGCCGTTAACGACCCTTTCATTACCACCGATTACATGACATACATGTTTAAATACGACAGTGTTCACGGACACTGGAAGCATCACGATGTCACCGTTAAGGACGAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGGAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGATATCATTGTTGAGTCCACCGGAGTTTTCACCGATAAGGACAAGGCCGCCGCACATTTGAAGGGTGGTGCGAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATGTTTGTTGTTGGTGTTAACGAGCACGAGTACAAGCCAGAGCTTGATATTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCTCCACTTGCTAAGGTTATTAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGCCACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAAGAGCTGCTTCATTTAACATCATTCCTAGCAGCACTGGAGCTGCCAAGGCTGTTGGAAAAGTCCTTCCTGCTTTGAACGGAAAATTGACTGGTATGGCATTCCGTGTTCCCACCGTGGATGTCTCTGTTGTTGACCTCACAGTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAAGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAA
Predicted protein sequences of Glyma.04g193400
>Glyma.04g193400.1.p sequence-type=predicted peptide transcript=Glyma.04g193400.1 locus=Glyma.04g193400 ID=Glyma.04g193400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGKVKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDSVHGHWKHHDVTVKDEKTLLFGDKPVTVFGHRNPEEIPWGSTGADIIVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELDIISNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKEASYDEIKNAIKEESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALNKNFVKLVSWYDNEWGYSSRVIDLLVFVAKKSF*






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