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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma.04g193100

Feature Type:gene_model
Chromosome:Gm04
Start:46466217
stop:46468787
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g193100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G48480.1AT Cysteine proteinases superfamily protein JGI N/AIEA
GO:0006508GO-bp proteolysis EnsemblGenomesN/AIEA
GO:0006508GO-bp proteolysis JGI N/AIEA
GO:0016926GO-bp protein desumoylation EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0004175GO-mf endopeptidase activity EnsemblGenomesN/AIEA
GO:0008234GO-mf cysteine-type peptidase activity EnsemblGenomesN/AIEA
GO:0008234GO-mf cysteine-type peptidase activity JGI N/AIEA
PTHR12438Panther UBIQUITIN-LIKE PROTEASE PROTEIN 2 JGI N/AIEA
PTHR12438:SF7Panther THIOL PROTEASE ULP-4-RELATED JGI N/AIEA
PF02902PFAM Ulp1 protease family, C-terminal catalytic domain JGI N/AIEA

Expression Patterns of Glyma.04g193100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g193100 not represented in the dataset
Glyma.04g193100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.04g193100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g36810 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g193100
>Glyma.04g193100.2 sequence-type=transcript locus=Glyma.04g193100 ID=Glyma.04g193100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATGGATCAAGTTTGGTCTTTGTGTGTTGTCACAAGATCAGGCACTCAGCAATCACTTAAATCCGAGCGTTCGATCAAGATTAAACGGCCCTAGATTCACTATCGATAAATCAGATTAGGAAAGCCACTGAAAACGTGAGCAATGGGATCATCATCCCACGGTTCCAGTTTACTCAACCGTATGCTTGCGTGTTATGCCGATTGCATCGAATCCATTCCCCAAGCAAACACTCAGTGCTCAGAGCGCTACCCTATTTACCTGGTTACTCCTTTCTAATTCTGGAACGTTATTCTCAACATTGAGGTGAGTAACACACTCTGCATAACAACAGCAATAGTAGAAGAAGAAACTGCGCTCAGCATCAATGAACACTAGCAAACTCAGTGACACCCAAGTTGTTTCTGTGAAGCAAGAAAGAAAAATCAACTTAGGATGGAGAAACAAGAAAACAAAGGTTTTAAAAGATGTGATGGAAAGTGATTTTTGGAGCAATGTTCCCCAGCGATTGCGAACAAAGAGGAAGAGTAAATTCAATGGCAAGGAAGCACTTTCTACACCCAAGGTAGTGCTTTCTAAATCGAAGGAAACAATTTCTAGATCCAATAAAGCACTTTCTACACTCAAGGAAGCTCTTTCTAGACCCAATAAAGCACTTTCTACACCTAAGGAAGTGCTTTCTACACTGAAGGAAGCACTTTCTAGACCCAAAGAAAAGCTAAACAGTGGAGATTTTGATATTTACTTGAAGAAAATATGGAAGATTTTCTCAGGAGATAGGTTGAGGCACTTTACATGCTTTGACAGCTTATGGTTTAGTCTTTACAGGGCCGCTCCATCTAAAGACAAGGTGCTTACTTGGATTAAAAAGGAACCTATTTTCTCCAAGTCATATGTTTTTGTTCCTATAGTCTGCTGGGGTCATTGGAGCCTTTTGATCCTGTGCCATTTTGGTGAAAGCTTGGAATCAACCACCAAATCACGATGCATGTTGTTGCTGGATTCTCTTGAAATGACCAATCCTAGACGGCTCGAACCCGAGATTAGAAGATTTGTATTAGATATTTATAAAACAGAGGACAGACCTGAGGCTAAGCATCTTGTATCTCAAATTCCTTTTTTGGTGCCCAAGATGAAAAAAGATTGGTTTAGCTTTGAAGACCTGGATAGATTTTATGAGAGACTTGATTCACTGAATTAGATGTCCCCAAACTTGACCAGACTAGTGATTAGATCTAACATACTTTATTGTCAACTGATTATATTGCATAGGATAATAAGAGGCAGGCGAAAAATATAAAAATAGTGTTAGGGATGTTTCATATTTTGATTCTAGTAGAGGGTACTCTCTTCTATGGATGTAGTTCAACTCTATTGGAATTATATTCTGCTCTGGAATTGATGTTTACACCACTAATTTGCTTCTATTTGTACAGTTGTTAAATCTTGTTCAAATTCATAAAACCGGTATTTTTGTTAGCTTAGTTGA
Coding sequences of Glyma.04g193100
>Glyma.04g193100.1 sequence-type=CDS polypeptide=Glyma.04g193100.1.p locus=Glyma.04g193100 ID=Glyma.04g193100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAACACTAGCAAACTCAGTGACACCCAAGTTGTTTCTGTGAAGCAAGAAAGAAAAATCAACTTAGGATGGAGAAACAAGAAAACAAAGGTTTTAAAAGATGTGATGGAAAGTGATTTTTGGAGCAATGTTCCCCAGCGATTGCGAACAAAGAGGAAGAGTAAATTCAATGGCAAGGAAGCACTTTCTACACCCAAGGTAGTGCTTTCTAAATCGAAGGAAACAATTTCTAGATCCAATAAAGCACTTTCTACACTCAAGGAAGCTCTTTCTAGACCCAATAAAGCACTTTCTACACCTAAGGAAGTGCTTTCTACACTGAAGGAAGCACTTTCTAGACCCAAAGAAAAGCTAAACAGTGGAGATTTTGATATTTACTTGAAGAAAATATGGAAGATTTTCTCAGGAGATAGGTTGAGGCACTTTACATGCTTTGACAGCTTATGGTTTAGTCTTTACAGGGCCGCTCCATCTAAAGACAAGGTGCTTACTTGGATTAAAAAGGAACCTATTTTCTCCAAGTCATATGTTTTTGTTCCTATAGTCTGCTGGGGTCATTGGAGCCTTTTGATCCTGTGCCATTTTGGTGAAAGCTTGGAATCAACCACCAAATCACGATGCATGTTGTTGCTGGATTCTCTTGAAATGACCAATCCTAGACGGCTCGAACCCGAGATTAGAAGATTTGTATTAGATATTTATAAAACAGAGGACAGACCTGAGGCTAAGCATCTTGTATCTCAAATTCCTTTTTTGGTGCCCAAGGTGCCACAACAAAGAGATGGTAATGAATGTGGATTTTTCATCCTCTATTTCATTAATTTGTTTTTGGAGCATGCACCTGATAATTTTAGCATGGAGGGATATCCTTACTTTATGAAAAAAGATTGGTTTAGCTTTGAAGACCTGGATAGATTTTATGAGAGACTTGATTCACTGAATTAG

>Glyma.04g193100.2 sequence-type=CDS polypeptide=Glyma.04g193100.2.p locus=Glyma.04g193100 ID=Glyma.04g193100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAACACTAGCAAACTCAGTGACACCCAAGTTGTTTCTGTGAAGCAAGAAAGAAAAATCAACTTAGGATGGAGAAACAAGAAAACAAAGGTTTTAAAAGATGTGATGGAAAGTGATTTTTGGAGCAATGTTCCCCAGCGATTGCGAACAAAGAGGAAGAGTAAATTCAATGGCAAGGAAGCACTTTCTACACCCAAGGTAGTGCTTTCTAAATCGAAGGAAACAATTTCTAGATCCAATAAAGCACTTTCTACACTCAAGGAAGCTCTTTCTAGACCCAATAAAGCACTTTCTACACCTAAGGAAGTGCTTTCTACACTGAAGGAAGCACTTTCTAGACCCAAAGAAAAGCTAAACAGTGGAGATTTTGATATTTACTTGAAGAAAATATGGAAGATTTTCTCAGGAGATAGGTTGAGGCACTTTACATGCTTTGACAGCTTATGGTTTAGTCTTTACAGGGCCGCTCCATCTAAAGACAAGGTGCTTACTTGGATTAAAAAGGAACCTATTTTCTCCAAGTCATATGTTTTTGTTCCTATAGTCTGCTGGGGTCATTGGAGCCTTTTGATCCTGTGCCATTTTGGTGAAAGCTTGGAATCAACCACCAAATCACGATGCATGTTGTTGCTGGATTCTCTTGAAATGACCAATCCTAGACGGCTCGAACCCGAGATTAGAAGATTTGTATTAGATATTTATAAAACAGAGGACAGACCTGAGGCTAAGCATCTTGTATCTCAAATTCCTTTTTTGGTGCCCAAGATGAAAAAAGATTGGTTTAGCTTTGAAGACCTGGATAGATTTTATGAGAGACTTGATTCACTGAATTAG
Predicted protein sequences of Glyma.04g193100
>Glyma.04g193100.1.p sequence-type=predicted peptide transcript=Glyma.04g193100.1 locus=Glyma.04g193100 ID=Glyma.04g193100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNTSKLSDTQVVSVKQERKINLGWRNKKTKVLKDVMESDFWSNVPQRLRTKRKSKFNGKEALSTPKVVLSKSKETISRSNKALSTLKEALSRPNKALSTPKEVLSTLKEALSRPKEKLNSGDFDIYLKKIWKIFSGDRLRHFTCFDSLWFSLYRAAPSKDKVLTWIKKEPIFSKSYVFVPIVCWGHWSLLILCHFGESLESTTKSRCMLLLDSLEMTNPRRLEPEIRRFVLDIYKTEDRPEAKHLVSQIPFLVPKVPQQRDGNECGFFILYFINLFLEHAPDNFSMEGYPYFMKKDWFSFEDLDRFYERLDSLN*

>Glyma.04g193100.2.p sequence-type=predicted peptide transcript=Glyma.04g193100.2 locus=Glyma.04g193100 ID=Glyma.04g193100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNTSKLSDTQVVSVKQERKINLGWRNKKTKVLKDVMESDFWSNVPQRLRTKRKSKFNGKEALSTPKVVLSKSKETISRSNKALSTLKEALSRPNKALSTPKEVLSTLKEALSRPKEKLNSGDFDIYLKKIWKIFSGDRLRHFTCFDSLWFSLYRAAPSKDKVLTWIKKEPIFSKSYVFVPIVCWGHWSLLILCHFGESLESTTKSRCMLLLDSLEMTNPRRLEPEIRRFVLDIYKTEDRPEAKHLVSQIPFLVPKMKKDWFSFEDLDRFYERLDSLN*






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