Glyma.04g191400

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Report for Sequence Feature Glyma.04g191400

Feature Type:	gene_model
Chromosome:	Gm04
Start:	46220242
stop:	46235879
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.04g191400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G48380.1	AT	Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2	JGI	N/A	IEA
AT3G48380.3	AT	Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2	JGI	N/A	IEA
GO:0006508	GO-bp	proteolysis	EnsemblGenomes	N/A	IEA
GO:0071567	GO-mf	UFM1 hydrolase activity	EnsemblGenomes	N/A	IEA
PTHR13226	Panther	FAMILY NOT NAMED	JGI	N/A	IEA
PTHR13226:SF1	Panther		JGI	N/A	IEA
PF07910	PFAM	Peptidase family C78	JGI	N/A	IEA

Expression Patterns of Glyma.04g191400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g191400 not represented in the dataset	Glyma.04g191400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.04g191400

Paralog	Evidence	Comments
Glyma.06g174400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g191400 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma04g36560	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.04g191400

Limit To All Plant Sequences

>Glyma.04g191400.2 sequence-type=transcript locus=Glyma.04g191400 ID=Glyma.04g191400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTACATGTGACTCCCTCGAATTTTAGCCGAATAGATATACAGAATCAACCAGTTCTATAAGTGTCCACCAGTTCAACCTCTGAATCCACCGATCGGTCACCGTTTGGTTTTCGCAACACTATTTTTTCAAGTGAAAAAAGAAACCGTTTCCCCTGATTTCATTTGAAAACACAAACACAGAGGATTTCAATGGCGGATGATAGCAACCGCAGCGTGAGACTGCTATGCCGCCCGAAGCAGCTCAACACAAAAGGATCCGACCCGGGAATCCATTTCTGGCTTATCGGATCCCCATTCTTCCCGCCACTCACCGTCGCCTCCTTCCTCCGCCGCATCCACACGCTCCCCTCCTCCGCTTCCCCCGATTTGCCCAAAGAATCTGAGGACCTTCGAACACTCATCCCCAAAGGCTTCGAAGTCGTTGGAGCCCTAGCTTCTGGGGACGATACCCACGCTCGCACGGCCGTTGACGCCGCGCGTGCATTGATGAACCTTCTCTACGGCGACGGAACAGATCGACCGGTTATCGGAGCGGTTTGCGGCTCGGATTCCGGCGAGCTGCGGTTTGTTGTGTCAGAGAGTGAAAATGCCACGGGACTCGAATCTGTTTCGTCGGTAATAGAGGAAAGGGATTCGGAGAAGTTTGTGTGGGAGAATGGTTGCTTGCTTCACTGCGAGCTTCCAATTAAGTTGCCACTCTATTATAGTCTCAAGAATCCAACTGATGTTGAGAAATCATATGCACAGGTTACTGAATCTGTTATTGCCAAGTTAAGAGACCCTCAGGCTGTGTACATGTTAGAAATGTCAAACAAAGCCTCCCGGGATATATCTCCTCCTGTCATAATTCGAGGTGTACAATTAGACTTTAGCACAGACCTCTCCAAGATCAAGCCTTTGGCTGAGGATGATGATGGCTTCAATGCAAGCTCACTATCATGTTCATACTTTTCCATCAGCAGTAAAGCAGGCTCACCAGTTTTTTCTGCAGAGAATGCAGATACTATCCAAGTTAGTGTTCTCTTTAATAGCTTAGGGTCATCATCAGCTTCTACTGTGCCTGTTGCAGAATACTTTCCAGTCCAGGAAGAAACTAGACTCCTTGTTGTGGATATCAAGCTAGATGTACTCTGCTATTCTTCCAGGGAGCTTCCACTGAAATATGCAGTTTCAAATTTAATCATACCTGGCTTAGTTGACCAATTAAATGTAGTGCAGAAGTTGATGTTGCCTAACCTTTTGGCACAACACCCTCGGCTAAAATCTTATCACTTTAGTCCTCCTGGGATTCTACATCCAATAACAGTTTTCTATGAACTGAGTTTTGGGGAGACAGAAATGAAGCAAGTTGAAGTTAGGAGATCCTTGCACTCAAGGTTGGGATTACCGTATGATCGTCCCCTTCTAAGAATTTCTAATGCCTTGGATTTTTCAAAATTGAAGAACAATGATATGGTCTCTCTACAGAAAGGTTCAACTTTGCTCAGAGATGTACACATTGGGATTCCAAGTAGCGGGGTTACTGGGGGAACTGTTTCCCTTGTTCAAGGTTCATATGAATACTTCCATTATCTTCACAATGGTTATAATGATTCGGGATGGGGTTGTGCTTACCGCTCTCTCCAGACTATCATTTCATGGTTCAGACTTCAAAACTATACATCCATAGAAGTTCCTTCTCATAGGGAAATACAGCAGACACTTGTTGAAATTGGTGATAAAGACCCTTCTTTTGTTGGATCACGAGATTGGATCGGTGCCATTGAATTGAGCTTTGTTTTGGACAAACTTCTGGGTGTTACGTGCAAAGTCATCAATGTTAGATCTGGAGCTGAGCTTCCAGAAAAATGTCGAGAGCTAGCGATGCACTTTGAAAACCAAAGTACACCTGTTATGATTGGTTAGTAAATTATGTAttttttttattttttatttttgcttttATCTGCCAT

Coding sequences of Glyma.04g191400

Limit To All Plant Sequences

>Glyma.04g191400.1 sequence-type=CDS polypeptide=Glyma.04g191400.1.p locus=Glyma.04g191400 ID=Glyma.04g191400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGATGATAGCAACCGCAGCGTGAGACTGCTATGCCGCCCGAAGCAGCTCAACACAAAAGGATCCGACCCGGGAATCCATTTCTGGCTTATCGGATCCCCATTCTTCCCGCCACTCACCGTCGCCTCCTTCCTCCGCCGCATCCACACGCTCCCCTCCTCCGCTTCCCCCGATTTGCCCAAAGAATCTGAGGACCTTCGAACACTCATCCCCAAAGGCTTCGAAGTCGTTGGAGCCCTAGCTTCTGGGGACGATACCCACGCTCGCACGGCCGTTGACGCCGCGCGTGCATTGATGAACCTTCTCTACGGCGACGGAACAGATCGACCGGTTATCGGAGCGGTTTGCGGCTCGGATTCCGGCGAGCTGCGGTTTGTTGTGTCAGAGAGTGAAAATGCCACGGGACTCGAATCTGTTTCGTCGGTAATAGAGGAAAGGGATTCGGAGAAGTTTGTGTGGGAGAATGGTTGCTTGCTTCACTGCGAGCTTCCAATTAAGTTGCCACTCTATTATAGTCTCAAGAATCCAACTGATGTTGAGAAATCATATGCACAGGTTACTGAATCTGTTATTGCCAAGTTAAGAGACCCTCAGGCTGTGTACATGTTAGAAATGTCAAACAAAGCCTCCCGGGATATATCTCCTCCTGTCATAATTCGAGGTGTACAATTAGACTTTAGCACAGACCTCTCCAAGATCAAGCCTTTGGCTGAGGATGATGATGGCTTCAATGCAAGCTCACTATCATGTTCATACTTTTCCATCAGCAGTAAAGCAGGCTCACCAGTTTTTTCTGCAGAGAATGCAGATACTATCCAAGTTAGTGTTCTCTTTAATAGCTTAGGGTCATCATCAGCTTCTACTGTGCCTGTTGCAGAATACTTTCCAGTCCAGGAAGAAACTAGACTCCTTGTTGTGGATATCAAGCTAGATGTACTCTGCTATTCTTCCAGGGAGCTTCCACTGAAATATGCAGTTTCAAATTTAATCATACCTGGCTTAGTTGACCAATTAAATGTAGTGCAGAAGTTGATGTTGCCTAACCTTTTGGCACAACACCCTCGGCTAAAATCTTATCACTTTAGTCCTCCTGGGATTCTACATCCAATAACAGTTTTCTATGAACTGAGTTTTGGGGAGACAGAAATGAAGCAAGTTGAAGTTAGGAGATCCTTGCACTCAAGGTTGGGATTACCGTATGATCGTCCCCTTCTAAGAATTTCTAATGCCTTGGATTTTTCAAAATTGAAGAACAATGATATGGTCTCTCTACAGAAAGGTTCAACTTTGCTCAGAGATGTACACATTGGGATTCCAAGTAGCGGGGTTACTGGGGGAACTGTTTCCCTTGTTCAAGGTTCATATGAATACTTCCATTATCTTCACAATGGTTATAATGATTCGGGATGGGGTTGTGCTTACCGCTCTCTCCAGACTATCATTTCATGGTTCAGACTTCAAAACTATACATCCATAGAAGTTCCTTCTCATAGGGAAATACAGCAGACACTTGTTGAAATTGGTGATAAAGACCCTTCTTTTGTTGGATCACGAGATTGGATCGGTGCCATTGAATTGAGCTTTGTTTTGGACAAACTTCTGGGTGTTACGTGCAAAGTCATCAATGTTAGATCTGGAGCTGAGCTTCCAGAAAAATGTCGAGAGCTAGCGATGCACTTTGAAAACCAAAGTACACCTGTTATGATTGGTGGTGGTGTACTTGCATATACACTCTTGGGAGTGGATTACAATGAAGCAAGTGGAGATTGTGCATTTTTAATACTTGATCCCCACTATACAGGTTCGGATGACCTAAAGAAAATAGTCAATGGAGGATGGTGTGGGTGGAAAAAGGCTGTTGATAGCAAGGGAAAGAATTTCTTCTTGCATGATAAGTTTTATAATCTCCTGCTGCCACAGAGACCCAACATGGTTTGA

>Glyma.04g191400.2 sequence-type=CDS polypeptide=Glyma.04g191400.2.p locus=Glyma.04g191400 ID=Glyma.04g191400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGATGATAGCAACCGCAGCGTGAGACTGCTATGCCGCCCGAAGCAGCTCAACACAAAAGGATCCGACCCGGGAATCCATTTCTGGCTTATCGGATCCCCATTCTTCCCGCCACTCACCGTCGCCTCCTTCCTCCGCCGCATCCACACGCTCCCCTCCTCCGCTTCCCCCGATTTGCCCAAAGAATCTGAGGACCTTCGAACACTCATCCCCAAAGGCTTCGAAGTCGTTGGAGCCCTAGCTTCTGGGGACGATACCCACGCTCGCACGGCCGTTGACGCCGCGCGTGCATTGATGAACCTTCTCTACGGCGACGGAACAGATCGACCGGTTATCGGAGCGGTTTGCGGCTCGGATTCCGGCGAGCTGCGGTTTGTTGTGTCAGAGAGTGAAAATGCCACGGGACTCGAATCTGTTTCGTCGGTAATAGAGGAAAGGGATTCGGAGAAGTTTGTGTGGGAGAATGGTTGCTTGCTTCACTGCGAGCTTCCAATTAAGTTGCCACTCTATTATAGTCTCAAGAATCCAACTGATGTTGAGAAATCATATGCACAGGTTACTGAATCTGTTATTGCCAAGTTAAGAGACCCTCAGGCTGTGTACATGTTAGAAATGTCAAACAAAGCCTCCCGGGATATATCTCCTCCTGTCATAATTCGAGGTGTACAATTAGACTTTAGCACAGACCTCTCCAAGATCAAGCCTTTGGCTGAGGATGATGATGGCTTCAATGCAAGCTCACTATCATGTTCATACTTTTCCATCAGCAGTAAAGCAGGCTCACCAGTTTTTTCTGCAGAGAATGCAGATACTATCCAAGTTAGTGTTCTCTTTAATAGCTTAGGGTCATCATCAGCTTCTACTGTGCCTGTTGCAGAATACTTTCCAGTCCAGGAAGAAACTAGACTCCTTGTTGTGGATATCAAGCTAGATGTACTCTGCTATTCTTCCAGGGAGCTTCCACTGAAATATGCAGTTTCAAATTTAATCATACCTGGCTTAGTTGACCAATTAAATGTAGTGCAGAAGTTGATGTTGCCTAACCTTTTGGCACAACACCCTCGGCTAAAATCTTATCACTTTAGTCCTCCTGGGATTCTACATCCAATAACAGTTTTCTATGAACTGAGTTTTGGGGAGACAGAAATGAAGCAAGTTGAAGTTAGGAGATCCTTGCACTCAAGGTTGGGATTACCGTATGATCGTCCCCTTCTAAGAATTTCTAATGCCTTGGATTTTTCAAAATTGAAGAACAATGATATGGTCTCTCTACAGAAAGGTTCAACTTTGCTCAGAGATGTACACATTGGGATTCCAAGTAGCGGGGTTACTGGGGGAACTGTTTCCCTTGTTCAAGGTTCATATGAATACTTCCATTATCTTCACAATGGTTATAATGATTCGGGATGGGGTTGTGCTTACCGCTCTCTCCAGACTATCATTTCATGGTTCAGACTTCAAAACTATACATCCATAGAAGTTCCTTCTCATAGGGAAATACAGCAGACACTTGTTGAAATTGGTGATAAAGACCCTTCTTTTGTTGGATCACGAGATTGGATCGGTGCCATTGAATTGAGCTTTGTTTTGGACAAACTTCTGGGTGTTACGTGCAAAGTCATCAATGTTAGATCTGGAGCTGAGCTTCCAGAAAAATGTCGAGAGCTAGCGATGCACTTTGAAAACCAAAGTACACCTGTTATGATTGGTTAG

Predicted protein sequences of Glyma.04g191400

Limit To All Plant Sequences

>Glyma.04g191400.1.p sequence-type=predicted peptide transcript=Glyma.04g191400.1 locus=Glyma.04g191400 ID=Glyma.04g191400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADDSNRSVRLLCRPKQLNTKGSDPGIHFWLIGSPFFPPLTVASFLRRIHTLPSSASPDLPKESEDLRTLIPKGFEVVGALASGDDTHARTAVDAARALMNLLYGDGTDRPVIGAVCGSDSGELRFVVSESENATGLESVSSVIEERDSEKFVWENGCLLHCELPIKLPLYYSLKNPTDVEKSYAQVTESVIAKLRDPQAVYMLEMSNKASRDISPPVIIRGVQLDFSTDLSKIKPLAEDDDGFNASSLSCSYFSISSKAGSPVFSAENADTIQVSVLFNSLGSSSASTVPVAEYFPVQEETRLLVVDIKLDVLCYSSRELPLKYAVSNLIIPGLVDQLNVVQKLMLPNLLAQHPRLKSYHFSPPGILHPITVFYELSFGETEMKQVEVRRSLHSRLGLPYDRPLLRISNALDFSKLKNNDMVSLQKGSTLLRDVHIGIPSSGVTGGTVSLVQGSYEYFHYLHNGYNDSGWGCAYRSLQTIISWFRLQNYTSIEVPSHREIQQTLVEIGDKDPSFVGSRDWIGAIELSFVLDKLLGVTCKVINVRSGAELPEKCRELAMHFENQSTPVMIGGGVLAYTLLGVDYNEASGDCAFLILDPHYTGSDDLKKIVNGGWCGWKKAVDSKGKNFFLHDKFYNLLLPQRPNMV*

>Glyma.04g191400.2.p sequence-type=predicted peptide transcript=Glyma.04g191400.2 locus=Glyma.04g191400 ID=Glyma.04g191400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADDSNRSVRLLCRPKQLNTKGSDPGIHFWLIGSPFFPPLTVASFLRRIHTLPSSASPDLPKESEDLRTLIPKGFEVVGALASGDDTHARTAVDAARALMNLLYGDGTDRPVIGAVCGSDSGELRFVVSESENATGLESVSSVIEERDSEKFVWENGCLLHCELPIKLPLYYSLKNPTDVEKSYAQVTESVIAKLRDPQAVYMLEMSNKASRDISPPVIIRGVQLDFSTDLSKIKPLAEDDDGFNASSLSCSYFSISSKAGSPVFSAENADTIQVSVLFNSLGSSSASTVPVAEYFPVQEETRLLVVDIKLDVLCYSSRELPLKYAVSNLIIPGLVDQLNVVQKLMLPNLLAQHPRLKSYHFSPPGILHPITVFYELSFGETEMKQVEVRRSLHSRLGLPYDRPLLRISNALDFSKLKNNDMVSLQKGSTLLRDVHIGIPSSGVTGGTVSLVQGSYEYFHYLHNGYNDSGWGCAYRSLQTIISWFRLQNYTSIEVPSHREIQQTLVEIGDKDPSFVGSRDWIGAIELSFVLDKLLGVTCKVINVRSGAELPEKCRELAMHFENQSTPVMIG*

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