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Report for Sequence Feature Glyma.04g190900

Feature Type:gene_model
Chromosome:Gm04
Start:46152356
stop:46155245
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g190900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G48360.1AT BTB and TAZ domain protein 2 JGI N/AIEA
AT5G63160.1AT BTB and TAZ domain protein 1 JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0016573GO-bp histone acetylation EnsemblGenomesN/AIEA
GO:0030162GO-bp regulation of proteolysis EnsemblGenomesN/AIEA
GO:0043161GO-bp proteasome-mediated ubiquitin-dependent protein catabolic process EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0019005GO-cc SCF ubiquitin ligase complex EnsemblGenomesN/AIEA
GO:0003712GO-mf transcription cofactor activity EnsemblGenomesN/AIEA
GO:0003712GO-mf transcription cofactor activity JGI N/AIEA
GO:0004402GO-mf histone acetyltransferase activity EnsemblGenomesN/AIEA
GO:0004402GO-mf histone acetyltransferase activity JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0031625GO-mf ubiquitin protein ligase binding EnsemblGenomesN/AIEA
KOG1778 KOG CREB binding protein/P300 and related TAZ Zn-finger proteins JGI N/AIEA
PTHR24413Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24413:SF192Panther JGI N/AIEA
PF00651PFAM BTB/POZ domain JGI N/AIEA
PF02135PFAM TAZ zinc finger JGI N/AIEA

Expression Patterns of Glyma.04g190900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.04g190900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g36500 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g190900
>Glyma.04g190900.2 sequence-type=transcript locus=Glyma.04g190900 ID=Glyma.04g190900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTCATAGTGATTGTAATCGTCCATCTCTTGGATTTTATTCTTATCGTACTTCCTAATGAGGTGGCTTCTATATATAACATTCGTCTTCCTCGTAATTCCCACATGATATACATCATCAACCCCGAAACCAAAACCTCCTTCAACCACGCTAGTTCAACTCAACCAATTACTTCATATTCATATATATGGATTCCCCTGCAGTTTCCTCTATCCACTTTCACAACGCCCATGTCTTACCCGAACCAGACCTTTTTATGCACACTCCCGGTGGTAACCGCATTCCAGCGCACGCAACCATTCTGGCTTCGGCATCCCCAGTTTTAGAAAACGTCATTGCGTCCAACCGAGTCGTCAAAATCCACGGCGTTCCCGACGGCGCCGTCACGGCCTTCGTAGCGTTCCTCTACTCCTCCAGGTGCACGGAGGAGGACATGGACAAGTACGGAATCCACCTTCTAGCATTGTCGCACGTGTATTCGGTGCCGCAGCTGAAGCAGAGGTGCATCAAGGGACTGGCCCAGCGCTTGAGCACGGAGAACGTGGTGGACGTGTTGCAACTCTCTCGGCTCTGCGACGCACCGGATCTCTACCTCAAGTGCGTGAAGCTCCTCAGGAACCGTTTCAAAGCCGTGAAGGAAACAGAGGGCTGGAAATTCCTCGAGAGCCACGACCCCTGGCTCGAACTCGACGTTCTCCGCCTCATGGGCGAACTCGAAAAGaggaagaggagggtgaggaagtggagggaggaggagaggTTGTACGTGCAGCTGAGCGAGGCGATGGAGTGTTTGGAGCACATATGCACGGAGGGGTGTACGGAGGTGGGGCCATACGAGGTGGAGGTTGGACGACAAAAAACGCCGTGCTCAAAGTTCGCCACGTGTCAGGGTTTGCAGGTGTTGATACGACACTTGGGAACTTGCAACAGGAAGCTCAAAGGAGGGTGTTTGCGGTGTAAGCGTATGTGGCAGCTCTTCAGGCTCCACTCCTCCATTTGCCTATGCCAGAATTCATGCAAGGTTCCTCTTTGCAGACCAAATTCAAATTCATAGGATGCACAGGACAGG
Coding sequences of Glyma.04g190900
>Glyma.04g190900.1 sequence-type=CDS polypeptide=Glyma.04g190900.1.p locus=Glyma.04g190900 ID=Glyma.04g190900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTCCCCTGCAGTTTCCTCTATCCACTTTCACAACGCCCATGTCTTACCCGAACCAGACCTTTTTATGCACACTCCCGGTGGTAACCGCATTCCAGCGCACGCAACCATTCTGGCTTCGGCATCCCCAGTTTTAGAAAACGTCATTGCGTCCAACCGAGTCGTCAAAATCCACGGCGTTCCCGACGGCGCCGTCACGGCCTTCGTAGCGTTCCTCTACTCCTCCAGGTGCACGGAGGAGGACATGGACAAGTACGGAATCCACCTTCTAGCATTGTCGCACGTGTATTCGGTGCCGCAGCTGAAGCAGAGGTGCATCAAGGGACTGGCCCAGCGCTTGAGCACGGAGAACGTGGTGGACGTGTTGCAACTCTCTCGGCTCTGCGACGCACCGGATCTCTACCTCAAGTGCGTGAAGCTCCTCAGGAACCGTTTCAAAGCCGTGAAGGAAACAGAGGGCTGGAAATTCCTCGAGAGCCACGACCCCTGGCTCGAACTCGACGTTCTCCGCCTCATGGGCGAACTCGAAAAGAGGAAGAGGAGGGTGAGGAAGTGGAGGGAGGAGGAGAGGTTGTACGTGCAGCTGAGCGAGGCGATGGAGTGTTTGGAGCACATATGCACGGAGGGGTGTACGGAGGTGGGGCCATACGAGGTGGAGGTTGGACGACAAAAAACGCCGTGCTCAAAGTTCGCCACGTGTCAGGGTTTGCAGGTGTTGATACGACACTTGGGAACTTGCAACAGGAAGCTCAAAGGAGGGTGTTTGCGGTGTAAGCGTATGTGGCAGCTCTTCAGGCTCCACTCCTCCATTTGCCTATGCCAGAATTCATGCAAGGTTCCTCTTTGCAGGCAAATTCGATTAAAAATGGAGCAAGAGAACATGAAAGATGACGCAAGGTGGAAACTACTGGTGAGGAAGGTGGCCTCGGCCAAAGCCTTGTCTTCCTTGGCGCTGCCAAAGAGGAAATTAGATCAGAGCTAG

>Glyma.04g190900.2 sequence-type=CDS polypeptide=Glyma.04g190900.2.p locus=Glyma.04g190900 ID=Glyma.04g190900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTCCCCTGCAGTTTCCTCTATCCACTTTCACAACGCCCATGTCTTACCCGAACCAGACCTTTTTATGCACACTCCCGGTGGTAACCGCATTCCAGCGCACGCAACCATTCTGGCTTCGGCATCCCCAGTTTTAGAAAACGTCATTGCGTCCAACCGAGTCGTCAAAATCCACGGCGTTCCCGACGGCGCCGTCACGGCCTTCGTAGCGTTCCTCTACTCCTCCAGGTGCACGGAGGAGGACATGGACAAGTACGGAATCCACCTTCTAGCATTGTCGCACGTGTATTCGGTGCCGCAGCTGAAGCAGAGGTGCATCAAGGGACTGGCCCAGCGCTTGAGCACGGAGAACGTGGTGGACGTGTTGCAACTCTCTCGGCTCTGCGACGCACCGGATCTCTACCTCAAGTGCGTGAAGCTCCTCAGGAACCGTTTCAAAGCCGTGAAGGAAACAGAGGGCTGGAAATTCCTCGAGAGCCACGACCCCTGGCTCGAACTCGACGTTCTCCGCCTCATGGGCGAACTCGAAAAGAGGAAGAGGAGGGTGAGGAAGTGGAGGGAGGAGGAGAGGTTGTACGTGCAGCTGAGCGAGGCGATGGAGTGTTTGGAGCACATATGCACGGAGGGGTGTACGGAGGTGGGGCCATACGAGGTGGAGGTTGGACGACAAAAAACGCCGTGCTCAAAGTTCGCCACGTGTCAGGGTTTGCAGGTGTTGATACGACACTTGGGAACTTGCAACAGGAAGCTCAAAGGAGGGTGTTTGCGGTGTAAGCGTATGTGGCAGCTCTTCAGGCTCCACTCCTCCATTTGCCTATGCCAGAATTCATGCAAGGTTCCTCTTTGCAGACCAAATTCAAATTCATAG
Predicted protein sequences of Glyma.04g190900
>Glyma.04g190900.1.p sequence-type=predicted peptide transcript=Glyma.04g190900.1 locus=Glyma.04g190900 ID=Glyma.04g190900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDSPAVSSIHFHNAHVLPEPDLFMHTPGGNRIPAHATILASASPVLENVIASNRVVKIHGVPDGAVTAFVAFLYSSRCTEEDMDKYGIHLLALSHVYSVPQLKQRCIKGLAQRLSTENVVDVLQLSRLCDAPDLYLKCVKLLRNRFKAVKETEGWKFLESHDPWLELDVLRLMGELEKRKRRVRKWREEERLYVQLSEAMECLEHICTEGCTEVGPYEVEVGRQKTPCSKFATCQGLQVLIRHLGTCNRKLKGGCLRCKRMWQLFRLHSSICLCQNSCKVPLCRQIRLKMEQENMKDDARWKLLVRKVASAKALSSLALPKRKLDQS*

>Glyma.04g190900.2.p sequence-type=predicted peptide transcript=Glyma.04g190900.2 locus=Glyma.04g190900 ID=Glyma.04g190900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDSPAVSSIHFHNAHVLPEPDLFMHTPGGNRIPAHATILASASPVLENVIASNRVVKIHGVPDGAVTAFVAFLYSSRCTEEDMDKYGIHLLALSHVYSVPQLKQRCIKGLAQRLSTENVVDVLQLSRLCDAPDLYLKCVKLLRNRFKAVKETEGWKFLESHDPWLELDVLRLMGELEKRKRRVRKWREEERLYVQLSEAMECLEHICTEGCTEVGPYEVEVGRQKTPCSKFATCQGLQVLIRHLGTCNRKLKGGCLRCKRMWQLFRLHSSICLCQNSCKVPLCRPNSNS*






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