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Report for Sequence Feature Glyma.04g190200

Feature Type:gene_model
Chromosome:Gm04
Start:46086785
stop:46089618
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g190200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G48330.1AT protein-l-isoaspartate methyltransferase 1 JGI N/AIEA
GO:0006464GO-bp cellular protein modification process EnsemblGenomesN/AIEA
GO:0006464GO-bp cellular protein modification process JGI N/AIEA
GO:0006479GO-bp protein methylation EnsemblGenomesN/AIEA
GO:0006479GO-bp protein methylation JGI N/AIEA
GO:0032259GO-bp methylation EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm JGI N/AIEA
GO:0004719GO-mf protein-L-isoaspartate (D-aspartate) O-methyltransferase activity EnsemblGenomesN/AIEA
GO:0004719GO-mf protein-L-isoaspartate (D-aspartate) O-methyltransferase activity JGI N/AIEA
GO:0008168GO-mf methyltransferase activity EnsemblGenomesN/AIEA
GO:0008276GO-mf protein methyltransferase activity JGI N/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
KOG1661 KOG Protein-L-isoaspartate(D-aspartate) O-methyltransferase JGI N/AIEA
PTHR11579Panther PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE JGI N/AIEA
PF01135PFAM Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) JGI N/AIEA

Expression Patterns of Glyma.04g190200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g190200
ParalogEvidenceComments
Glyma.06g175300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g190200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g36430 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g190200
>Glyma.04g190200.1 sequence-type=CDS polypeptide=Glyma.04g190200.1.p locus=Glyma.04g190200 ID=Glyma.04g190200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGGGTGCAGTACCACTACTACCCTTTCCCTTCTCTGGCGTATGGTTGCAGCTACTGTTATGCTTATGCGACTACTAAATTAAAACCTACTCACTCACTCTCTCTAACACTCTCCAACCACCGTCGCATTTCTGCGTCACAACCTCACTCTTCCACCTTCTCCATCATCACCAACCTCTTCTTCTTCCAAAACCCTAATTTCATCACGGGGAACACTCTCTTCCTCAGGATGCAGAGATTTTGCTCAGTAAGTGGCTTAAGTAAGAACAAAGCACTGGTGGAGAGGTTGCAGCGCTATGGAGTGATCACATCAAGTAAGGTGGCTGAAGTGATGGAGACAGTTGATAGAGCCTTGTTTGTACCAGATGGAGCTGCACCTTATGATGACAGCCCCATGGCCATAGGGTACAATGCCACTATCTCTGCGCCGCATATGCATGCCATGTGTCTTCAGTTGCTTGAGGAGAATTTGCAGCCTGGGATGCATGCTCTGGATGTTGGCTCTGGAACGGGGTACCTGACTGCATGCTTTGCCTTGATGGTTGGGCCCCAAGGCCGTGCTGTTGGTGTGGAGCATATTCCTGAGTTGGTGTCTTTTTCAATAGAGAATATTCAGAAAAGTGCTGCAGCTGCACAATTGAAAGATGGTTCCCTTTCTGTCCATGCTGGTGATGGAAGGCAAGGTTGGCCAGAGTTTGCCCCTTATGATGCCATTCACGTTGGAGCAGCAGCACCAGAAATTCCCCAACCACTTATTGACCAGTTGAAGCCTGGAGGGAGAATGGTGATTCCTGTCGGAAACATATTCCAAGATTTAAAGGTGGTGGATAAGAATTCTGATGGTTCTATCAGTGTCCGCACTGAGACATCTGTTCGTTATGTACCCCTCACCAGTCGAGAAGCTCAACTGCGAGGTTACTAA
Predicted protein sequences of Glyma.04g190200
>Glyma.04g190200.1.p sequence-type=predicted peptide transcript=Glyma.04g190200.1 locus=Glyma.04g190200 ID=Glyma.04g190200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRVQYHYYPFPSLAYGCSYCYAYATTKLKPTHSLSLTLSNHRRISASQPHSSTFSIITNLFFFQNPNFITGNTLFLRMQRFCSVSGLSKNKALVERLQRYGVITSSKVAEVMETVDRALFVPDGAAPYDDSPMAIGYNATISAPHMHAMCLQLLEENLQPGMHALDVGSGTGYLTACFALMVGPQGRAVGVEHIPELVSFSIENIQKSAAAAQLKDGSLSVHAGDGRQGWPEFAPYDAIHVGAAAPEIPQPLIDQLKPGGRMVIPVGNIFQDLKVVDKNSDGSISVRTETSVRYVPLTSREAQLRGY*






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