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Report for Sequence Feature Glyma.04g189200

Feature Type:gene_model
Chromosome:Gm04
Start:46020865
stop:46023009
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g189200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G45590.1AT splicing endonuclease 1 JGI N/AIEA
GO:0000379GO-bp tRNA-type intron splice site recognition and cleavage EnsemblGenomesN/AIEA
GO:0006388GO-bp tRNA splicing, via endonucleolytic cleavage and ligation EnsemblGenomesN/AIEA
GO:0006388GO-bp tRNA splicing, via endonucleolytic cleavage and ligation JGI N/AIEA
GO:0090305GO-bp nucleic acid phosphodiester bond hydrolysis EnsemblGenomesN/AIEA
GO:0090501GO-bp RNA phosphodiester bond hydrolysis EnsemblGenomesN/AIEA
GO:0090502GO-bp RNA phosphodiester bond hydrolysis, endonucleolytic EnsemblGenomesN/AIEA
GO:0000214GO-cc tRNA-intron endonuclease complex EnsemblGenomesN/AIEA
GO:0000213GO-mf tRNA-intron endonuclease activity EnsemblGenomesN/AIEA
GO:0000213GO-mf tRNA-intron endonuclease activity JGI N/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0004518GO-mf nuclease activity EnsemblGenomesN/AIEA
KOG4685 KOG tRNA splicing endonuclease SEN2 JGI N/AIEA
PTHR21227Panther TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2 JGI N/AIEA
PF01974PFAM tRNA intron endonuclease, catalytic C-terminal domain JGI N/AIEA
PF02778PFAM tRNA intron endonuclease, N-terminal domain JGI N/AIEA

Expression Patterns of Glyma.04g189200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.04g189200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g36310 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g189200
>Glyma.04g189200.2 sequence-type=transcript locus=Glyma.04g189200 ID=Glyma.04g189200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ttAAATATTAAAACCTCAAGGAATATAAATAAAAAATAGGTCAATGGGTATGAGGTGGAGGGAGTACTTTCTTCCCAAGTCCAAATCCATTCCATTCATTTTGCTGTCTCTCTGTTTTCAACAAACGTCCACAACAACACATTTCGCCGTTTCAAATTACTACTTGACACCGGACGTTAGACCAGAGATAGAAGAAGGGAGAGTGGAAAATTTCGGAGGCAAGAGGGACGGCGCGGACGCTTTCTAGCGATAGTTTTAAGTGTCGCTTCGCAAATCGCCACAAAAAAACACGCGTGACGGGAGAGGTGCTCATATTTAGTGTCCATCGTGTCTTGAAAAGGATTGCTTCCAAAGGAAGAGAGTCTTGCGGTGTAGCGGCGCTATTGACTACATAGCTTATATCCAAATGGCACCAAGATGGAAAGGAAAAGATGCAAAAGCTAAAAAGGATGCACAAGCTGAAGCACTCAAGGAACCCATGTCAAAGATTGTATCTCAAATTCAGTCTTCTCTAGTTCAATCAGATACTCGTGGATTTCTCTCTGGTAGTAGTGTACACTTAGTAGTGGAAGCAGAACAACTTCATTTGCTCGATAAAGCATGTTTTGGCTCACCTGTGAGAACAGTTGAAAAGGACAAACCCCGGTTTCAATTAAGCTTTGAGGAGGCATTCTACCTATGCTATTCCTTGAAATGCCTTAAGATTAATAATGACAGTGATGATACTAGTTCCCAAACCGATGAAGAGCTGTGGCATTACATGAAGTCAAAGAAAGAAACATTCCCCTGTTTCTACAAGGCTTATTCCCACCTGAGAATGAAAAACTGGGTAGTGAGGTCAGGAGCTCAGTATGGTGCAGATTTCGTTGTCTATCGTCACCATCCAGCTCGGGTCCATTCGGAGTATGGTGTGCTTGTTTTATCAGATGAGGAAGATAAAGATCTAAATGGAAGGTTGAGAGTATGGTCTGATGTTCATTGCACAACTCGACTTCTTGGAGGCGTTGCAAAAATCTTATTGGTTTTGTATGTCAATAGAAATGGTGGCAGCAATGAGTCTCCATTATGTTTGGCAAACTACACCGTTGAAGAGCGCACAATCACCAGATGGAATCCAGAACAATGCCGCGAAAAGATGGTAGTTCATGCTAATTCTGATAACGGAACTGGGTAATACTTCATCATATGGACACAACAAAATATATCAAACATGAAAAGAAAGGTATTTTTTTATTGTCTTTGTCCAAAGATATTAGTTATTCAAGCATAACAATATTCTTAAAGATTTATGCATTTATAATATTCTTAAGATTTCATTCCTTTTTTA
Coding sequences of Glyma.04g189200
>Glyma.04g189200.1 sequence-type=CDS polypeptide=Glyma.04g189200.1.p locus=Glyma.04g189200 ID=Glyma.04g189200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCACCAAGATGGAAAGGAAAAGATGCAAAAGCTAAAAAGGATGCACAAGCTGAAGCACTCAAGGAACCCATGTCAAAGATTGTATCTCAAATTCAGTCTTCTCTAGTTCAATCAGATACTCGTGGATTTCTCTCTGGTAGTAGTGTACACTTAGTAGTGGAAGCAGAACAACTTCATTTGCTCGATAAAGCATGTTTTGGCTCACCTGTGAGAACAGTTGAAAAGGACAAACCCCGGTTTCAATTAAGCTTTGAGGAGGCATTCTACCTATGCTATTCCTTGAAATGCCTTAAGATTAATAATGACAGTGATGATACTAGTTCCCAAACCGATGAAGAGCTGTGGCATTACATGAAGTCAAAGAAAGAAACATTCCCCTGTTTCTACAAGGCTTATTCCCACCTGAGAATGAAAAACTGGGTAGTGAGGTCAGGAGCTCAGTATGGTGCAGATTTCGTTGTCTATCGTCACCATCCAGCTCGGGTCCATTCGGAGTATGGTGTGCTTGTTTTATCAGATGAGGAAGATAAAGATCTAAATGGAAGGTTGAGAGTATGGTCTGATGTTCATTGCACAACTCGACTTCTTGGAGGCGTTGCAAAAATCTTATTGGTTTTGTATGTCAATAGAAATGGTGGCAGCAATGAGTCTCCATTATGTTTGGCAAACTACACCGTTGAAGAGCGCACAATCACCAGATGGAATCCAGAACAATGCCGCGAAAAGATGGTAGTTCATGCTAATTCTGATAACGGAACTGGGTAA

>Glyma.04g189200.2 sequence-type=CDS polypeptide=Glyma.04g189200.2.p locus=Glyma.04g189200 ID=Glyma.04g189200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCACCAAGATGGAAAGGAAAAGATGCAAAAGCTAAAAAGGATGCACAAGCTGAAGCACTCAAGGAACCCATGTCAAAGATTGTATCTCAAATTCAGTCTTCTCTAGTTCAATCAGATACTCGTGGATTTCTCTCTGGTAGTAGTGTACACTTAGTAGTGGAAGCAGAACAACTTCATTTGCTCGATAAAGCATGTTTTGGCTCACCTGTGAGAACAGTTGAAAAGGACAAACCCCGGTTTCAATTAAGCTTTGAGGAGGCATTCTACCTATGCTATTCCTTGAAATGCCTTAAGATTAATAATGACAGTGATGATACTAGTTCCCAAACCGATGAAGAGCTGTGGCATTACATGAAGTCAAAGAAAGAAACATTCCCCTGTTTCTACAAGGCTTATTCCCACCTGAGAATGAAAAACTGGGTAGTGAGGTCAGGAGCTCAGTATGGTGCAGATTTCGTTGTCTATCGTCACCATCCAGCTCGGGTCCATTCGGAGTATGGTGTGCTTGTTTTATCAGATGAGGAAGATAAAGATCTAAATGGAAGGTTGAGAGTATGGTCTGATGTTCATTGCACAACTCGACTTCTTGGAGGCGTTGCAAAAATCTTATTGGTTTTGTATGTCAATAGAAATGGTGGCAGCAATGAGTCTCCATTATGTTTGGCAAACTACACCGTTGAAGAGCGCACAATCACCAGATGGAATCCAGAACAATGCCGCGAAAAGATGGTAGTTCATGCTAATTCTGATAACGGAACTGGGTAA
Predicted protein sequences of Glyma.04g189200
>Glyma.04g189200.1.p sequence-type=predicted peptide transcript=Glyma.04g189200.1 locus=Glyma.04g189200 ID=Glyma.04g189200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAPRWKGKDAKAKKDAQAEALKEPMSKIVSQIQSSLVQSDTRGFLSGSSVHLVVEAEQLHLLDKACFGSPVRTVEKDKPRFQLSFEEAFYLCYSLKCLKINNDSDDTSSQTDEELWHYMKSKKETFPCFYKAYSHLRMKNWVVRSGAQYGADFVVYRHHPARVHSEYGVLVLSDEEDKDLNGRLRVWSDVHCTTRLLGGVAKILLVLYVNRNGGSNESPLCLANYTVEERTITRWNPEQCREKMVVHANSDNGTG*

>Glyma.04g189200.2.p sequence-type=predicted peptide transcript=Glyma.04g189200.2 locus=Glyma.04g189200 ID=Glyma.04g189200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAPRWKGKDAKAKKDAQAEALKEPMSKIVSQIQSSLVQSDTRGFLSGSSVHLVVEAEQLHLLDKACFGSPVRTVEKDKPRFQLSFEEAFYLCYSLKCLKINNDSDDTSSQTDEELWHYMKSKKETFPCFYKAYSHLRMKNWVVRSGAQYGADFVVYRHHPARVHSEYGVLVLSDEEDKDLNGRLRVWSDVHCTTRLLGGVAKILLVLYVNRNGGSNESPLCLANYTVEERTITRWNPEQCREKMVVHANSDNGTG*






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