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Report for Sequence Feature Glyma.04g188800

Feature Type:gene_model
Chromosome:Gm04
Start:45964497
stop:45969090
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g188800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G48260.1AT with no lysine (K) kinase 3 JGI N/AIEA
GO:0006468GO-bp protein phosphorylation EnsemblGenomesN/AIEA
GO:0006468GO-bp protein phosphorylation JGI N/AIEA
GO:0016310GO-bp phosphorylation EnsemblGenomesN/AIEA
GO:0035556GO-bp intracellular signal transduction EnsemblGenomesN/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity JGI N/AIEA
GO:0004674GO-mf protein serine/threonine kinase activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0016301GO-mf kinase activity EnsemblGenomesN/AIEA
KOG0192 KOG Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs JGI N/AIEA
KOG0584 KOG Serine/threonine protein kinase JGI N/AIEA
PTHR13902Panther SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-RELATED JGI N/AIEA
PTHR13902:SF34Panther JGI N/AIEA
PF00069PFAM Protein kinase domain JGI N/AIEA

Proteins Associated with Glyma.04g188800
LocusGene SymbolProtein Name
WNK3 with no lysine kinase

Expression Patterns of Glyma.04g188800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g188800
ParalogEvidenceComments
Glyma.06g176800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g188800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g36260 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g188800
>Glyma.04g188800.2 sequence-type=transcript locus=Glyma.04g188800 ID=Glyma.04g188800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAGATTAGTATTTGACTTACCTGCCTAAGCTAATAACAATAACATGTTTATTATGTTAGTTGCTTCTCGTGTCACCTACACTCACACATCCTCGTCGTCTTCATCTTCGTTGCAACAAAGAAATCAAAACCACAACGAAAAGGGAGCGTCGTTTTAATGAATGCCATTTGATTTTCAGCTTTGACCCTCCCAACAACTACTACAATCACCACCTTAACTGTTCCCGCACCTAATACCATCGTGTTCTTCGTAATTCCATTAAATATCAACTGCAATAATTTTTGTTCGTTTTCTATTCCCAACAACAATCGACGACGTTGTTCGTTCCACATAGCTAGGGTTTCCGCCAATGCCGCCGGATTCCTCCGAGCTAGACCTCGACGATCCTGACATCGAGTTTGTTGAGGTTGATCCCACGGGTCGCTATGGTCGGTACAAGGAAGTTTTAGGGAAAGGGGCTTTCAAGAAAGTATATCGAGCGTTTGATGAGTTGGAAGGGATTGAAGTGGCGTGGAATCAGGTTAAGGTGGCGGATCTGTTGCGTAACTCTGAAGATTTGGAGCGACTTTATTCAGAAGTTCATTTGCTCAAGACTTTGAAGCATAAGAATATAATTAAGTTTTACAATTCATGGGTTGACACCAAGAATGAGAACATCAACTTCATTACTGAAATTTTCACCTCTGGAACGTTGCGCCAATACCGGAAGAAACATAAGCACGTTGATTTGAGAGCTGTGAAGAAATGGTCTAGGCAGATTTTGGAAGGCCTTTTATATCTTCACAGTCACAATCCACCGGTTATTCACCGAGACCTTAAGTGCGATAACATTTTTGTCAATGGGAATCAAGGGGAGGTGAAAATTGGTGATTTAGGATTGGCGGCTATCCTTCAACAGGCCAATTCAGCTCACAGTGTCATAGGTACCCCTGAGTTCATGGCCCCAGAACTTTATGAAGAGGAATACAATGAGCTTGTTGACATCTATGCTTTTGGCATGTGCTTGCTAGAGTTGGTAACTGTTGAGTACCCATATATTGAATGTACCAATGCTGCTCAAATATACAAGAAAGTGACATCTGGAATAAAGCCAGCGTCATTGGCAAAGGTGGCGGATCTTGAAGTTAAAGCATTTATTGAAAAGTGTATTGCTGATGTATCGGAACGGTTGTCTGCAAAAGACCTCCTGATGGATCCCTTCCTTCAGTCAGATAATGATAATGATAGTGTAGGAAATAGTTCTCATATAGCTGTTGAGCCAAGTAGGGAATTCACGGTGGAAGGTAATATTCGCAATATCCACTTTCCTTTTGATATTGAAGCAGACACATCAATCTCTGTTGCTGGTGAAATGGTTGAGGAGTTGGAACTCACTGATCAAGATGTTACAACTATTGCTAGGATGATTGATTCTGAAATTCGATATCACATTCCTAGTTGGAATTTCAGTGAAACTCCTCTTGACATTAACCATCAAGATTCAAGCTGTACCTCTGAAACTAGGCCAGAGACCTCTCCTATGAAAAATGATTCCATTGCTTCTCCTGGCAGTCTTGCATTAGAAATATTACCTTCAGGTCGTAGGTACTGGTCAGATTCACCAAGGGGAGTTGGAGGAAACTCTCCATCTCAACATTTTACTTCAATCTTGTCTAATGAAACAGGTGTGAATGCTGAGGAAGGCAACCTGATTACAAATGGTGATATTTCAGCTAATGATTGTGTTGATGGTACTGCTGAGCGGGAATGTGATGAGATTGCTGATTCCCCTTCCAGTGAGATAAGTATTACATCGGGAGCAACTAGTGAAAAATCTTCTCAGAAAGAAATATCTCGAAGTCTAAAAGATTCTGAAACGGAATACATCAATCAAATAACAACTAAATTGGAGAATTTGTTGGTTAAACAAAGAGAGGAGTTAGATGAACTAAAGAGGAAGCACAAATTAGCTGTCTCAGATCTTTTGATGGAAATTCCTCCAGAAATGTGCCAGAAGGTCCTAAACGTATGCAACCTGCAGATGCCTGACGGTGAAATGGCGATGCTTGTCCTTCATTAATCTAAATGACCCTTTGTGTGGTTTATGGTAGTAGTTCACTTAGAAAGCTCATCTTAGGAGTGAAATTTAGAAGTTGTGATCTTGCTTGTTGCTCGGAACTTGTGCACTGTTGATATTTTGGGTTTCATAATTCATGCATGAGAGGGTAATTTTTTAATGGCACGAGGTTCTTGGTATATATGTTGTCAAGAGGAATTGCAGGTGGGTTAACTGAGAACTGGGGAGTCATAGTCATCTTTGTAGGAGAAATCTCATTGAGGGACGACTTAATGTCCTAAGAACTTGGAGGACTTATGCTATTTCTGCATTTACCCAAAAAACATGGGGTTGAAATGAGAAATTAGCTTTGAGAGGTCGCAAGACTGGATTATATGGATTTCATTTCACATCTGTAAATAGTACAATTCATTAAACTATAGAAAAGTATACATTGTACATATGTAACTACTTGCTGTTGTTTCAGTTTACAGGAAGGTCTTCCCATCTAGTATTACAGGAAGGTCTTCTTCCCATTTGGTATTTCTGGGCTTGGAGGTCAACTACTGGAAATTTAAAATTTATTCCCCTGGATTATAATTTTAGTATTACTGACTTGTGTTTGGGCAGTATTTGTAAACTTGATTTTAA
Coding sequences of Glyma.04g188800
>Glyma.04g188800.1 sequence-type=CDS polypeptide=Glyma.04g188800.1.p locus=Glyma.04g188800 ID=Glyma.04g188800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCGCCGGATTCCTCCGAGCTAGACCTCGACGATCCTGACATCGAGTTTGTTGAGGTTGATCCCACGGGTCGCTATGGTCGGTACAAGGAAGTTTTAGGGAAAGGGGCTTTCAAGAAAGTATATCGAGCGTTTGATGAGTTGGAAGGGATTGAAGTGGCGTGGAATCAGGTTAAGGTGGCGGATCTGTTGCGTAACTCTGAAGATTTGGAGCGACTTTATTCAGAAGTTCATTTGCTCAAGACTTTGAAGCATAAGAATATAATTAAGTTTTACAATTCATGGGTTGACACCAAGAATGAGAACATCAACTTCATTACTGAAATTTTCACCTCTGGAACGTTGCGCCAATACCGGAAGAAACATAAGCACGTTGATTTGAGAGCTGTGAAGAAATGGTCTAGGCAGATTTTGGAAGGCCTTTTATATCTTCACAGTCACAATCCACCGGTTATTCACCGAGACCTTAAGTGCGATAACATTTTTGTCAATGGGAATCAAGGGGAGGTGAAAATTGGTGATTTAGGATTGGCGGCTATCCTTCAACAGGCCAATTCAGCTCACAGTGTCATAGGTACCCCTGAGTTCATGGCCCCAGAACTTTATGAAGAGGAATACAATGAGCTTGTTGACATCTATGCTTTTGGCATGTGCTTGCTAGAGTTGGTAACTGTTGAGTACCCATATATTGAATGTACCAATGCTGCTCAAATATACAAGAAAGTGACATCTGGAATAAAGCCAGCGTCATTGGCAAAGGTGGCGGATCTTGAAGTTAAAGCATTTATTGAAAAGTGTATTGCTGATGTATCGGAACGGTTGTCTGCAAAAGACCTCCTGATGGATCCCTTCCTTCAGTCAGATAATGATAATGATAGTGTAGGTCAATCTTCAAGATCTCAAACCCATCATTCAGGAAATAGTTCTCATATAGCTGTTGAGCCAAGTAGGGAATTCACGGTGGAAGGTCAGAGGAGAGATAATCATACAATATTTTTAAAATTGCGAATTGCAGATTCCTCAGGTAATATTCGCAATATCCACTTTCCTTTTGATATTGAAGCAGACACATCAATCTCTGTTGCTGGTGAAATGGTTGAGGAGTTGGAACTCACTGATCAAGATGTTACAACTATTGCTAGGATGATTGATTCTGAAATTCGATATCACATTCCTAGTTGGAATTTCAGTGAAACTCCTCTTGACATTAACCATCAAGATTCAAGCTGTACCTCTGAAACTAGGCCAGAGACCTCTCCTATGAAAAATGATTCCATTGCTTCTCCTGGCAGTCTTGCATTAGAAATATTACCTTCAGGTCGTAGGTACTGGTCAGATTCACCAAGGGGAGTTGGAGGAAACTCTCCATCTCAACATTTTACTTCAATCTTGTCTAATGAAACAGGTGTGAATGCTGAGGAAGGCAACCTGATTACAAATGGTGATATTTCAGCTAATGATTGTGTTGATGGTACTGCTGAGCGGGAATGTGATGAGATTGCTGATTCCCCTTCCAGTGAGATAAGTATTACATCGGGAGCAACTAGTGAAAAATCTTCTCAGAAAGAAATATCTCGAAGTCTAAAAGATTCTGAAACGGAATACATCAATCAAATAACAACTAAATTGGAGAATTTGTTGGTTAAACAAAGAGAGGAGTTAGATGAACTAAAGAGGAAGCACAAATTAGCTGTCTCAGATCTTTTGATGGAAATTCCTCCAGAAATGTGCCAGAAGGTCCTAAACGTATGCAACCTGCAGATGCCTGACGGTGAAATGGCGATGCTTGTCCTTCATTAA

>Glyma.04g188800.2 sequence-type=CDS polypeptide=Glyma.04g188800.2.p locus=Glyma.04g188800 ID=Glyma.04g188800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCGCCGGATTCCTCCGAGCTAGACCTCGACGATCCTGACATCGAGTTTGTTGAGGTTGATCCCACGGGTCGCTATGGTCGGTACAAGGAAGTTTTAGGGAAAGGGGCTTTCAAGAAAGTATATCGAGCGTTTGATGAGTTGGAAGGGATTGAAGTGGCGTGGAATCAGGTTAAGGTGGCGGATCTGTTGCGTAACTCTGAAGATTTGGAGCGACTTTATTCAGAAGTTCATTTGCTCAAGACTTTGAAGCATAAGAATATAATTAAGTTTTACAATTCATGGGTTGACACCAAGAATGAGAACATCAACTTCATTACTGAAATTTTCACCTCTGGAACGTTGCGCCAATACCGGAAGAAACATAAGCACGTTGATTTGAGAGCTGTGAAGAAATGGTCTAGGCAGATTTTGGAAGGCCTTTTATATCTTCACAGTCACAATCCACCGGTTATTCACCGAGACCTTAAGTGCGATAACATTTTTGTCAATGGGAATCAAGGGGAGGTGAAAATTGGTGATTTAGGATTGGCGGCTATCCTTCAACAGGCCAATTCAGCTCACAGTGTCATAGGTACCCCTGAGTTCATGGCCCCAGAACTTTATGAAGAGGAATACAATGAGCTTGTTGACATCTATGCTTTTGGCATGTGCTTGCTAGAGTTGGTAACTGTTGAGTACCCATATATTGAATGTACCAATGCTGCTCAAATATACAAGAAAGTGACATCTGGAATAAAGCCAGCGTCATTGGCAAAGGTGGCGGATCTTGAAGTTAAAGCATTTATTGAAAAGTGTATTGCTGATGTATCGGAACGGTTGTCTGCAAAAGACCTCCTGATGGATCCCTTCCTTCAGTCAGATAATGATAATGATAGTGTAGGAAATAGTTCTCATATAGCTGTTGAGCCAAGTAGGGAATTCACGGTGGAAGGTAATATTCGCAATATCCACTTTCCTTTTGATATTGAAGCAGACACATCAATCTCTGTTGCTGGTGAAATGGTTGAGGAGTTGGAACTCACTGATCAAGATGTTACAACTATTGCTAGGATGATTGATTCTGAAATTCGATATCACATTCCTAGTTGGAATTTCAGTGAAACTCCTCTTGACATTAACCATCAAGATTCAAGCTGTACCTCTGAAACTAGGCCAGAGACCTCTCCTATGAAAAATGATTCCATTGCTTCTCCTGGCAGTCTTGCATTAGAAATATTACCTTCAGGTCGTAGGTACTGGTCAGATTCACCAAGGGGAGTTGGAGGAAACTCTCCATCTCAACATTTTACTTCAATCTTGTCTAATGAAACAGGTGTGAATGCTGAGGAAGGCAACCTGATTACAAATGGTGATATTTCAGCTAATGATTGTGTTGATGGTACTGCTGAGCGGGAATGTGATGAGATTGCTGATTCCCCTTCCAGTGAGATAAGTATTACATCGGGAGCAACTAGTGAAAAATCTTCTCAGAAAGAAATATCTCGAAGTCTAAAAGATTCTGAAACGGAATACATCAATCAAATAACAACTAAATTGGAGAATTTGTTGGTTAAACAAAGAGAGGAGTTAGATGAACTAAAGAGGAAGCACAAATTAGCTGTCTCAGATCTTTTGATGGAAATTCCTCCAGAAATGTGCCAGAAGGTCCTAAACGTATGCAACCTGCAGATGCCTGACGGTGAAATGGCGATGCTTGTCCTTCATTAA
Predicted protein sequences of Glyma.04g188800
>Glyma.04g188800.1.p sequence-type=predicted peptide transcript=Glyma.04g188800.1 locus=Glyma.04g188800 ID=Glyma.04g188800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPPDSSELDLDDPDIEFVEVDPTGRYGRYKEVLGKGAFKKVYRAFDELEGIEVAWNQVKVADLLRNSEDLERLYSEVHLLKTLKHKNIIKFYNSWVDTKNENINFITEIFTSGTLRQYRKKHKHVDLRAVKKWSRQILEGLLYLHSHNPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQANSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTVEYPYIECTNAAQIYKKVTSGIKPASLAKVADLEVKAFIEKCIADVSERLSAKDLLMDPFLQSDNDNDSVGQSSRSQTHHSGNSSHIAVEPSREFTVEGQRRDNHTIFLKLRIADSSGNIRNIHFPFDIEADTSISVAGEMVEELELTDQDVTTIARMIDSEIRYHIPSWNFSETPLDINHQDSSCTSETRPETSPMKNDSIASPGSLALEILPSGRRYWSDSPRGVGGNSPSQHFTSILSNETGVNAEEGNLITNGDISANDCVDGTAERECDEIADSPSSEISITSGATSEKSSQKEISRSLKDSETEYINQITTKLENLLVKQREELDELKRKHKLAVSDLLMEIPPEMCQKVLNVCNLQMPDGEMAMLVLH*

>Glyma.04g188800.2.p sequence-type=predicted peptide transcript=Glyma.04g188800.2 locus=Glyma.04g188800 ID=Glyma.04g188800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPPDSSELDLDDPDIEFVEVDPTGRYGRYKEVLGKGAFKKVYRAFDELEGIEVAWNQVKVADLLRNSEDLERLYSEVHLLKTLKHKNIIKFYNSWVDTKNENINFITEIFTSGTLRQYRKKHKHVDLRAVKKWSRQILEGLLYLHSHNPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQANSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTVEYPYIECTNAAQIYKKVTSGIKPASLAKVADLEVKAFIEKCIADVSERLSAKDLLMDPFLQSDNDNDSVGNSSHIAVEPSREFTVEGNIRNIHFPFDIEADTSISVAGEMVEELELTDQDVTTIARMIDSEIRYHIPSWNFSETPLDINHQDSSCTSETRPETSPMKNDSIASPGSLALEILPSGRRYWSDSPRGVGGNSPSQHFTSILSNETGVNAEEGNLITNGDISANDCVDGTAERECDEIADSPSSEISITSGATSEKSSQKEISRSLKDSETEYINQITTKLENLLVKQREELDELKRKHKLAVSDLLMEIPPEMCQKVLNVCNLQMPDGEMAMLVLH*






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