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Report for Sequence Feature Glyma.04g188700

Feature Type:gene_model
Chromosome:Gm04
Start:45946433
stop:45948511
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g188700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G20360.1AT RAB GTPase homolog E1B JGI N/AIEA
GO:0006414GO-bp translational elongation EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0003746GO-mf translation elongation factor activity EnsemblGenomesN/AIEA
GO:0003924GO-mf GTPase activity EnsemblGenomesN/AIEA
GO:0003924GO-mf GTPase activity JGI N/AIEA
GO:0005525GO-mf GTP binding EnsemblGenomesN/AIEA
GO:0005525GO-mf GTP binding JGI N/AIEA
KOG0460 KOG Mitochondrial translation elongation factor Tu JGI N/AIEA
PTHR23115Panther TRANSLATION FACTOR JGI N/AIEA
PTHR23115:SF31Panther JGI N/AIEA
PF00009PFAM Elongation factor Tu GTP binding domain JGI N/AIEA
PF03143PFAM Elongation factor Tu C-terminal domain JGI N/AIEA
PF03144PFAM Elongation factor Tu domain 2 JGI N/AIEA

Expression Patterns of Glyma.04g188700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g188700
ParalogEvidenceComments
Glyma.06g176900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g188700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g36250 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g188700
>Glyma.04g188700.1 sequence-type=CDS polypeptide=Glyma.04g188700.1.p locus=Glyma.04g188700 ID=Glyma.04g188700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAGTTTCTTCTGCATCTGCTTCCTCCAAACTTATACTATTCCCCCATGCTTCATCTTCTTCCCTTATCTCCACACCCTTCCGTTCCTCCACCAACACCCACAAACTATCCCCTCTCTCCTCCTCCTTCCTCCACCCCACCACCGTCCTCCGCCGCACCCCCTCCTCCACCACTACCACCACCTCCCCGCGCCGCCCCCTCACCGTCCGCGCCGCCCGCGGCAAGTTCGAGCGCAAGAAGCCCCACGTGAACATCGGCACCATCGGCCACGTGGACCACGGCAAGACCACCCTGACCGCCGCCCTCACCATGGCCCTTGCCGCCCTCGGCAACAGCGCCCCGAAGAAGTACGACGAGATCGACGCCGCCCCGGAGGAACGCGCCCGCGGCATCACCATCAACACCGCCACCGTCGAGTACGAGACCGAGAACCGCCACTACGCCCACGTGGACTGCCCCGGCCACGCCGACTACGTCAAGAACATGATCACCGGCGCCGCCCAGATGGACGGCGCCATCCTTGTCGTCTCCGGCGCCGACGGCCCCATGCCCCAAACCAAAGAACACATCCTCTTAGCCAAGCAAGTCGGTGTCCCCAACATGGTCGTCTTCCTCAACAAGCAAGACCAAGTCGACGACGAAGAGCTTCTCCAACTAGTCGAACTCGAAGTTCGCGACCTTCTTACCTCCTACGAATTCCCCGGTGACGATACCCCCATCGTCTCCGGCTCCGCACTCTTAGCCCTAGAAGCCCTTATGGCGAACCCTGCCATCAAACGCGGCGACAACGAGTGGGTCGACAAAATCTACAAACTCATGGACGAAGTCGACGACTACATTCCCATCCCCCAGCGCCAGACCGACCTCCCATTCCTCCTCGCCGTCGAAGACGTTTTCTCCATCACCGGCCGTGGGACCGTCGCCACCGGCCGCGTAGAGCGTGGCACCGTCAAAGTAGGGGAAACTGTTGACCTTGTAGGATTGAGAGAGACAAGAAACACAACGGTCACAGGTGTGGAAATGTTCCAGAAGATTCTAGACGAAGCCCTCGCCGGGGACAACGTGGGGCTGTTGCTGAGAGGGGTTCAAAAGACGGACATCCAGAGAGGGATGGTGTTGGCGAAGCCTGGCACGATTACGCCGCACACCAAGTTCTCAGCGATTGTGTATGTTTTGAAGAAGGAAGAAGGTGGGAGACATTCACCTTTCTTTGCAGGGTATAGGCCTCAGTTTTACATGAGGACCACCGATGTGACTGGGAAGGTTACGGCTATCACCAACGATAGGGATGAAGAGTCGCAGATGGTGATGCCCGGTGACCGTGTGAAGATGGTGGTGGAGCTCATTGTGCCTGTGGCTTGCGAACAGGGAATGAGGTTTGCTATTAGGGAAGGTGGCAAGACCGTTGGTGCAGGTGTTATCCAATCCATCATTGAGTGA
Predicted protein sequences of Glyma.04g188700
>Glyma.04g188700.1.p sequence-type=predicted peptide transcript=Glyma.04g188700.1 locus=Glyma.04g188700 ID=Glyma.04g188700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAVSSASASSKLILFPHASSSSLISTPFRSSTNTHKLSPLSSSFLHPTTVLRRTPSSTTTTTSPRRPLTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALAALGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRDLLTSYEFPGDDTPIVSGSALLALEALMANPAIKRGDNEWVDKIYKLMDEVDDYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDLVGLRETRNTTVTGVEMFQKILDEALAGDNVGLLLRGVQKTDIQRGMVLAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTAITNDRDEESQMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE*






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