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Report for Sequence Feature Glyma.04g187500

Feature Type:gene_model
Chromosome:Gm04
Start:45829201
stop:45830410
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g187500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G70600.1AT Ribosomal protein L18e/L15 superfamily protein JGI N/AIEA
GO:0002181GO-bp cytoplasmic translation EnsemblGenomesN/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0005840GO-cc ribosome EnsemblGenomesN/AIEA
GO:0015934GO-cc large ribosomal subunit EnsemblGenomesN/AIEA
GO:0022625GO-cc cytosolic large ribosomal subunit EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome EnsemblGenomesN/AIEA
KOG1742 KOG 60s ribosomal protein L15/L27 JGI N/AIEA
PTHR11721Panther 60S RIBOSOMAL PROTEIN L27A JGI N/AIEA
PF00828PFAM Ribosomal protein L18e/L15 JGI N/AIEA

Expression Patterns of Glyma.04g187500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g187500
ParalogEvidenceComments
Glyma.06g178300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g187500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g36140 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g187500
>Glyma.04g187500.1 sequence-type=CDS polypeptide=Glyma.04g187500.1.p locus=Glyma.04g187500 ID=Glyma.04g187500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACTACACGCTTCAAGAAGAACAGGAAGAAGAGAGGCCACGTGAGTGCCGGCCATGGCCGCATCGGGAAGCACCGGAAGCACCCTGGAGGACGCGGTAATGCCGGAGGCATGCACCACCACCGGATCCTCTTTGACAAGTACCACCCTGGGTTCTTCGGCAAGGTCGGAATGCGCTATTTTCACAAGCTCCGCAACAAATTCTACTCTCCGATCCTCAACATCGACAAGCTCTGGTCCCTGGTTCCGCAAGAAGTGAAGGACAAGGCCTCCAAGGAGAACAAGGCGCCGCTGATCGACGTCACGCAGTTCGGGTACTTTAAGGTTCTCGGAAAGGGTGTTTTGCCGCAGAACCAGCCCGTTGTTGTCAAAGCTAAGCTTATTTCCAAGATCGCTGAGAAGAAGATCAAGGAGGCTGGCGGTGCTGTTGTTCTCACCGCCTGA
Predicted protein sequences of Glyma.04g187500
>Glyma.04g187500.1.p sequence-type=predicted peptide transcript=Glyma.04g187500.1 locus=Glyma.04g187500 ID=Glyma.04g187500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQNQPVVVKAKLISKIAEKKIKEAGGAVVLTA*






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