SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.04g187100

Feature Type:gene_model
Chromosome:Gm04
Start:44561890
stop:44563067
Source:JGI
Version:Wm82.a4.v1
High confidence:yes



Annotations for Glyma.04g187100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G63110.1AT ATHDA6,AXE1,HDA6,RPD3B,RTS1,SIL1 JGI N/AIEA
3.5.1.98EC histone deacetylase JGI N/AIEA
K06067KEGG Chromosome and associated proteins JGI N/AIEA
PF00850Pfam Histone deacetylase domain JGI N/AIEA

Proteins Associated with Glyma.04g187100
LocusGene SymbolProtein Name
HDA4 histone deacetylase

Gene model name correspondences to Glyma.04g187100 Gene Call Version Wm82.a4.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g36101 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g187100
>Glyma.04g187100.1 sequence-type=CDS polypeptide=Glyma.04g187100.1.p locus=Glyma.04g187100 id=Glyma.04g187100.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGGCAACAAGGGAGAGAGCAGAAATAGAGAATGGTGTTTCATTACCATCTGTGGGTATGGATGCAAATAAGCGTAGAGTGACATATTTCTACAAACCGAACATCGACGCCCACTATCATGGTGAAGAGTACCCAATGAATCCTTTTCGTGTTGACATTACCCACAACCTCATCGTCCACTATGGGCTACATCGACTCATGCAAATCAATCGCCCTTTCCTTGCCGACAAGGTTGACATTGCTCGCTTCCATTCCGATGACTATGTCGAGTTCCTGTCCACTGTTTCACCACAGATCCTTGCTGAAAACTTTGATTCCAACTATTGCCAACTTAAGCGCTTCAACATCGGTGGGGATTTCCCTATCTTGAACGGCCTTTTCGACTTTTGTCGTGTCTCTGCTGGCGGCTCTATCGGTGCTGCTGTTTGCCTAAACTGCTCCAATGCCGACATCACCATCAATTGGGCTGGGGGTTGGCACCATGCTAAAAAGACTAAAGCCTCTGGATTTTGCTACGTCAACGACATTGTTCTTGGCATTCTTGAACTTCTCAAAGTTCATAGGGTATTGGAATTTTGTGATTTTGGTCCCTAA
Predicted protein sequences of Glyma.04g187100
>Glyma.04g187100.1.p sequence-type=predicted peptide transcript=Glyma.04g187100.1 locus=Glyma.04g187100 id=Glyma.04g187100.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MATRERAEIENGVSLPSVGMDANKRRVTYFYKPNIDAHYHGEEYPMNPFRVDITHNLIVHYGLHRLMQINRPFLADKVDIARFHSDDYVEFLSTVSPQILAENFDSNYCQLKRFNIGGDFPILNGLFDFCRVSAGGSIGAAVCLNCSNADITINWAGGWHHAKKTKASGFCYVNDIVLGILELLKVHRVLEFCDFGP*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo