Glyma.04g186900

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Report for Sequence Feature Glyma.04g186900

Feature Type:	gene_model
Chromosome:	Gm04
Start:	45715339
stop:	45718155
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.04g186900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G63090.1	AT	Lateral organ boundaries (LOB) domain family protein	JGI	N/A	IEA
PF03195	PFAM	Protein of unknown function DUF260	JGI	N/A	IEA

Proteins Associated with Glyma.04g186900

Locus	Gene Symbol	Protein Name
	LBD18	LBD domain-containing transcription factor

Expression Patterns of Glyma.04g186900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.04g186900

Paralog	Evidence	Comments
Glyma.06g178900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g186900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma04g36080	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.04g186900

Limit To All Plant Sequences

>Glyma.04g186900.2 sequence-type=transcript locus=Glyma.04g186900 ID=Glyma.04g186900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAAAATGGGAGTCATCCCCACATTCGTGATATTATTATTAGATGCAAGTTAGGGTTTCCTCTTTAAGGGTGCTCTTCCTGTGACAAATCTGTGCCTTATATCTCTCATTGGCTAAGGCTCTTTTGTCTTGTGAGGGTAAAAGAGCAGCTTCTAAAGGGCCTCCCAACAAGGGGAAAAAAAAGGTACTTCCCTTTTAGTTCATCTGATCAAAGAAACCTATACATCACAAACAGGGAAATCAGaaaagaaagaaaagaaaaaaaaaaacaaaTGGCATCATCAAGCTCCTACAATTCTCCATGTGCAGCCTGCAAATTCTTGAGGAGGAAGTGCCTTCCCGGGTGCATCTTTGCACCTTACTTCCCACCAGAAGAGCCTCAAAAATTCGCCAACGTGCACAAGATCTTCGGTGCCAGCAATGTGACGAAGCTCCTCAATGAACTTCTCCCTCACCAGAGGGAAGATGCAGTGAACTCTCTTGCATATGAAGCCGAGGCACGCGTGAGAGACCCCGTTTATGGTTGCGTAGGTGCCATATCTTTCCTCCAGAGACAAGTCCAAAAGCTCCAGAAGGAGCTTGATTCCGCAAATGCTGATCTCCTTCGCTTTGCCTGCAATGACATGCCTCCACCCTCTCTTTCTGTGCCACCACAAATCCCCCAAAGGTCTTTTAGTGCAGGGTTTGGTAATAATAATGAATCAGCAAGTGGAGGAGAGTTCTATAGGCCTTCTCCTACCACCACTTACTCTTACCCTTATTCTCTTCCATGGACTGATACCTCTTCTGAGGATATCAATGATGGAGGAGGTAACTTGTGAGTGAATTATGAATAATATTGCACATCTAGGGTTTGTGCCTCTTTGAGGGCATGGCCCTGCAATATTTATAATATCTAGTTATGGTCTCTCTGGCTATTGTAGCCTCACTTGGACTCTTCTGGCTAGATGTGACTGATCAAGGTCTACTCTTAAATTAAATTAATATGAAGGGGTTTTGTTTAATTTAATTTCTAGGTGTGGTGATTATCAACATGTGGTGTTTATTTAAGACCTAAGGTGCCAAAAACTTTAGTTCTAAATAAGTCGGTGGAAGAGGAGCATGCATAGTAATGTATGCCTACTACTACTACTAGACCTACTCTTTATTGTGTATTAATTCAGTGCAACTCTCTACAGGCATGTGCAGTGAGCATGCGGAGTTGACATGCTCTGTCATTGTTTATGATTAAGAATAAATTGAG

>Glyma.04g186900.3 sequence-type=transcript locus=Glyma.04g186900 ID=Glyma.04g186900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAAAATGGGAGTCATCCCCACATTCGTGATATTATTATTAGATGCAAGTTAGGGTTTCCTCTTTAAGGGTGCTCTTCCTGTGACAAATCTGTGCCTTATATCTCTCATTGGCTAAGGCTCTTTTGTCTTGTGAGGGTAAAAGAGCAGCTTCTAAAGGGCCTCCCAACAAGGGGAAAAAAAAGGGAAATCAGaaaagaaagaaaagaaaaaaaaaaacaaaTGGCATCATCAAGCTCCTACAATTCTCCATGTGCAGCCTGCAAATTCTTGAGGAGGAAGTGCCTTCCCGGGTGCATCTTTGCACCTTACTTCCCACCAGAAGAGCCTCAAAAATTCGCCAACGTGCACAAGATCTTCGGTGCCAGCAATGTGACGAAGCTCCTCAATGAACTTCTCCCTCACCAGAGGGAAGATGCAGTGAACTCTCTTGCATATGAAGCCGAGGCACGCGTGAGAGACCCCGTTTATGGTTGCGTAGGTGCCATATCTTTCCTCCAGAGACAAGTCCAAAAGCTCCAGAAGGAGCTTGATTCCGCAAATGCTGATCTCCTTCGCTTTGCCTGCAATGACATGCCTCCACCCTCTCTTTCTGTGCCACCACAAATCCCCCAAAGGTCTTTTAGTGCAGGGTTTGGTAATAATAATGAATCAGCAAGTGGAGGAGAGTTCTATAGGCCTTCTCCTACCACCACTTACTCTTACCCTTATTCTCTTCCATGGACTGATACCTCTTCTGAGGATATCAATGATGGAGGAGGTAACTTGTGAGTGAATTATGAATAATATTGCACATCTAGGGTTTGTGCCTCTTTGAGGGCATGGCCCTGCAATATTTATAATATCTAGTTATGGTCTCTCTGGCTATTGTAGCCTCACTTGGACTCTTCTGGCTAGATGTGACTGATCAAGGTCTACTCTTAAATTAAATTAATATGAAGGGGTTTTGTTTAATTTAATTTCTAGGTGTGGTGATTATCAACATGTGGTGTTTATTTAAGACCTAAGGTGCCAAAAACTTTAGTTCTAAATAAGTCGGTGGAAGAGGAGCATGCATAGTAATGTATGCCTACTACTACTACTAGACCTACTCTTTATTGTGTATTAATTCAGTGCAACTCTCTACAGGCATGTGCAGTGAGCATGCGGAGTTGACATGCTCTGTCATTGTTTATGATTAAGAATAAATTGAG

Coding sequences of Glyma.04g186900

Limit To All Plant Sequences

>Glyma.04g186900.1 sequence-type=CDS polypeptide=Glyma.04g186900.1.p locus=Glyma.04g186900 ID=Glyma.04g186900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATCATCAAGCTCCTACAATTCTCCATGTGCAGCCTGCAAATTCTTGAGGAGGAAGTGCCTTCCCGGGTGCATCTTTGCACCTTACTTCCCACCAGAAGAGCCTCAAAAATTCGCCAACGTGCACAAGATCTTCGGTGCCAGCAATGTGACGAAGCTCCTCAATGAACTTCTCCCTCACCAGAGGGAAGATGCAGTGAACTCTCTTGCATATGAAGCCGAGGCACGCGTGAGAGACCCCGTTTATGGTTGCGTAGGTGCCATATCTTTCCTCCAGAGACAAGTCCAAAAGCTCCAGAAGGAGCTTGATTCCGCAAATGCTGATCTCCTTCGCTTTGCCTGCAATGACATGCCTCCACCCTCTCTTTCTGTGCCACCACAAATCCCCCAAAGGTCTTTTAGTGCAGGGTTTGGTAATAATAATGAATCAGCAAGTGGAGGAGAGTTCTATAGGCCTTCTCCTACCACCACTTACTCTTACCCTTATTCTCTTCCATGGACTGATACCTCTTCTGAGGATATCAATGATGGAGGAGGTAACTTGTGA

>Glyma.04g186900.2 sequence-type=CDS polypeptide=Glyma.04g186900.2.p locus=Glyma.04g186900 ID=Glyma.04g186900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATCATCAAGCTCCTACAATTCTCCATGTGCAGCCTGCAAATTCTTGAGGAGGAAGTGCCTTCCCGGGTGCATCTTTGCACCTTACTTCCCACCAGAAGAGCCTCAAAAATTCGCCAACGTGCACAAGATCTTCGGTGCCAGCAATGTGACGAAGCTCCTCAATGAACTTCTCCCTCACCAGAGGGAAGATGCAGTGAACTCTCTTGCATATGAAGCCGAGGCACGCGTGAGAGACCCCGTTTATGGTTGCGTAGGTGCCATATCTTTCCTCCAGAGACAAGTCCAAAAGCTCCAGAAGGAGCTTGATTCCGCAAATGCTGATCTCCTTCGCTTTGCCTGCAATGACATGCCTCCACCCTCTCTTTCTGTGCCACCACAAATCCCCCAAAGGTCTTTTAGTGCAGGGTTTGGTAATAATAATGAATCAGCAAGTGGAGGAGAGTTCTATAGGCCTTCTCCTACCACCACTTACTCTTACCCTTATTCTCTTCCATGGACTGATACCTCTTCTGAGGATATCAATGATGGAGGAGGTAACTTGTGA

>Glyma.04g186900.3 sequence-type=CDS polypeptide=Glyma.04g186900.3.p locus=Glyma.04g186900 ID=Glyma.04g186900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATCATCAAGCTCCTACAATTCTCCATGTGCAGCCTGCAAATTCTTGAGGAGGAAGTGCCTTCCCGGGTGCATCTTTGCACCTTACTTCCCACCAGAAGAGCCTCAAAAATTCGCCAACGTGCACAAGATCTTCGGTGCCAGCAATGTGACGAAGCTCCTCAATGAACTTCTCCCTCACCAGAGGGAAGATGCAGTGAACTCTCTTGCATATGAAGCCGAGGCACGCGTGAGAGACCCCGTTTATGGTTGCGTAGGTGCCATATCTTTCCTCCAGAGACAAGTCCAAAAGCTCCAGAAGGAGCTTGATTCCGCAAATGCTGATCTCCTTCGCTTTGCCTGCAATGACATGCCTCCACCCTCTCTTTCTGTGCCACCACAAATCCCCCAAAGGTCTTTTAGTGCAGGGTTTGGTAATAATAATGAATCAGCAAGTGGAGGAGAGTTCTATAGGCCTTCTCCTACCACCACTTACTCTTACCCTTATTCTCTTCCATGGACTGATACCTCTTCTGAGGATATCAATGATGGAGGAGGTAACTTGTGA

Predicted protein sequences of Glyma.04g186900

Limit To All Plant Sequences

>Glyma.04g186900.1.p sequence-type=predicted peptide transcript=Glyma.04g186900.1 locus=Glyma.04g186900 ID=Glyma.04g186900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASSSSYNSPCAACKFLRRKCLPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQKLQKELDSANADLLRFACNDMPPPSLSVPPQIPQRSFSAGFGNNNESASGGEFYRPSPTTTYSYPYSLPWTDTSSEDINDGGGNL*

>Glyma.04g186900.2.p sequence-type=predicted peptide transcript=Glyma.04g186900.2 locus=Glyma.04g186900 ID=Glyma.04g186900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASSSSYNSPCAACKFLRRKCLPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQKLQKELDSANADLLRFACNDMPPPSLSVPPQIPQRSFSAGFGNNNESASGGEFYRPSPTTTYSYPYSLPWTDTSSEDINDGGGNL*

>Glyma.04g186900.3.p sequence-type=predicted peptide transcript=Glyma.04g186900.3 locus=Glyma.04g186900 ID=Glyma.04g186900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASSSSYNSPCAACKFLRRKCLPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQKLQKELDSANADLLRFACNDMPPPSLSVPPQIPQRSFSAGFGNNNESASGGEFYRPSPTTTYSYPYSLPWTDTSSEDINDGGGNL*

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