Glyma.04g186400

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Report for Sequence Feature Glyma.04g186400

Feature Type:	gene_model
Chromosome:	Gm04
Start:	45656968
stop:	45664438
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.04g186400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G54170.1	AT	FKBP12 interacting protein 37	JGI	N/A	IEA
GO:0000381	GO-bp	regulation of alternative mRNA splicing, via spliceosome	EnsemblGenomes	N/A	IEA
GO:0080009	GO-bp	mRNA methylation	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
KOG2991	KOG	Splicing regulator	JGI	N/A	IEA
PTHR15217	Panther	WILMS' TUMOR 1-ASSOCIATING PROTEIN	JGI	N/A	IEA

Expression Patterns of Glyma.04g186400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g186400 not represented in the dataset	Glyma.04g186400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.04g186400

Paralog	Evidence	Comments
Glyma.06g179400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g186400 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma04g36000	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.04g186400

Limit To All Plant Sequences

>Glyma.04g186400.2 sequence-type=transcript locus=Glyma.04g186400 ID=Glyma.04g186400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CAAATCTTAAATGGAGTCTATGTAATTTAATTTTTGAATTTGTAAAAATTATGACAAATTGTAAACAATCTTACACATTTAGGTCAGATCAATCTTGCATGTTTTCCTCAATCAGAAGAATAAATTTAAATTTTTTTTATCTTTAAAGGATTAATTTATTATCATCTCAAACTTTTTCTGGGACCAAAATAGGTATTTTCAGTGTGAAGCTGCACCAGAAATCGCGTAGTGGCTGCATCTCCGTTCACCACTGATCGCTTACGAGCTCGAAAAGGTTAATGAAGGAGCACGTCATTGCGCTTCTACTACTCTTCCACTTTCACAGATAACCCTATTGCATAATCGCGCTCCTTCCTCTCTAGGGTTTCTTCAACTTCATGGCTTCCCCTACTCATTTCGACGATGACTTCGATTTCGGAGGCGGATTTGGCGGAAGGCATTCAGGTTTTTTGATTTTGACGCCAAACGCTGTTTGGATTTGACTTCTTGTCGTGTTGAGTTTGATTGTTTCGTTGCTCGGAAATTTAGGTAATAAGAGGTCGTCTCCCGATTACGACGACGAGGATTATGACAACGATCCTTTTGCACCGAAGAAGGCTATAACAAAAGCTGAAGAAGCTTCTGGTGTAACAACAGGAATGATCTTGTCACTTCGTGAGAGTCTCCAGAACTGTAAGGATACACTTGCAACATGCCAAAATGAACTTGAGGCTGCAAAATCAGAGATTCAGAGTTGGCATTCTACACTTAAAAATCAGCCATCCATACTTGCCGGGATCACTCCAGAGCCCAAGATGTTGATTAATTATCTGCAGGCCTTGAAATCCTCTGAAGAGTCTTTAAGAGAGCAGCTTGAAAAGGCAAAGAAAAAGGAAGCTGCATTCATTGTAACATTTGCAAAACGAGAACAAGAGATAGCAGAGTTGAAGTCTGCGGTGCGAGATCTGAAAGTGCAACTCAAGCCACCATCAATGCAGGCTAGGAGGTTGTTACTAGATCCAGCTGTTCATGAAGAGTTCACGCGTTTAAAGAACTTAGTTGAGGAAAAGGATAAAAAAGTAAAGGAGTTGCAAGATAACATTGCTGCTGTAAGTTTTACTCCCCAAAGCAAGATGGGGAAGATGCTGATGGCTAAATGTAGAACCCTGCAAGAGGAAAATGAAGAGATTGGAAATCAAGCGTCTGAGGGGAAGATGCATGAATTAGGGATGAAACTTGCATTGCAGAAGTCCCAAAATTCACAACTTAGAAATCAATTTGAAGGGTTGCAGAAGCACATGGAAGGACTGACAAATGATGTGGAAAGATCCAATGAAATGGTTCTTATGTTACAAGAAAAATTAGAAGAGAAGGATCGGCAGATACAGAGACTAAAACATGAGATTAAACAGAAGAACTTGGAGGATCAAAGACTAAAACATGAGCTTCAACAGAAAAACTTGGAGGATCAAAGACTAAAACATGAACTTCAACAGAAGAACTTGGAGGATGGAAATGACAATAATGCCGGGGAGGCTGCTAACTAATTTGatatatatatatatatatatatatatatatatatatatatatTTACTGCTGTACATTATATTAATTTTTTTTGCGAAAACTGTGGATATTTATGAGGAATGATTATGCTTCTGCTTTGAATGGAATTATGGAAAATATAGTAGATGGAGCTACTTTTTAATACAATTCATGACATTTAGTCTGTTACAAGGGAGGGAGGTAGGGAAAAATTATAAATAGTAAACTTTCTAAATAAATTTCAAGATAGGGCAATGCTACCGTGGACCACCTTATAAGTGATCTAAAAAGTGCACATTTTTATTCACGGCTAGATTCATCTAATCCTCACTGATATAGCATGTACCTTGGATTATTCTCTCCCCAATTAGAAACTCTCCACCACCTGCAGCACCAGCCGACGACCCCATTACTGCTGTGTATATCTCAGAAACAGAAACTCCTCCTCCATTAGCTACACTGCCTTTGCCATTGCCGTGGTCTACTGCCTTCGCCTCCCAGAAAATACCGCAGTGTATTAAATATAAACCATTCAAATATTCACAAAACAAAAATTCCAAATTAGAATGCTTCACTTGAAAAGATCGTATGATCCTTTGTGAGGGAAAAAGAATCTCCAAAAACTATAAATCATATAAATTCACCTTAATCCCACAAGGCAAAAGAAAAAACAGGAGACAAATCATGAACATGT

>Glyma.04g186400.3 sequence-type=transcript locus=Glyma.04g186400 ID=Glyma.04g186400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGAATTTGTAAAAATTATGACAAATTGTAAACAATCTTACACATTTAGGTATTTTCAGTGTGAAGCTGCACCAGAAATCGCGTAGTGGCTGCATCTCCGTTCACCACTGATCGCTTACGAGCTCGAAAAGGTTAATGAAGGAGCACGTCATTGCGCTTCTACTACTCTTCCACTTTCACAGATAACCCTATTGCATAATCGCGCTCCTTCCTCTCTAGGGTTTCTTCAACTTCATGGCTTCCCCTACTCATTTCGACGATGACTTCGATTTCGGAGGCGGATTTGGCGGAAGGCATTCAGGTAATAAGAGGTCGTCTCCCGATTACGACGACGAGGATTATGACAACGATCCTTTTGCACCGAAGAAGGCTATAACAAAAGCTGAAGAAGCTTCTGGTGTAACAACAGGAATGATCTTGTCACTTCGTGAGAGTCTCCAGAACTGTAAGGATACACTTGCAACATGCCAAAATGAACTTGAGGCTGCAAAATCAGAGATTCAGAGTTGGCATTCTACACTTAAAAATCAGCCATCCATACTTGCCGGGATCACTCCAGAGCCCAAGATGTTGATTAATTATCTGCAGGCCTTGAAATCCTCTGAAGAGTCTTTAAGAGAGCAGCTTGAAAAGGCAAAGAAAAAGGAAGCTGCATTCATTGTAACATTTGCAAAACGAGAACAAGAGATAGCAGAGTTGAAGTCTGCGGTGCGAGATCTGAAAGTGCAACTCAAGCCACCATCAATGCAGGCTAGGAGGTTGTTACTAGATCCAGCTGTTCATGAAGAGTTCACGCGTTTAAAGAACTTAGTTGAGGAAAAGGATAAAAAAGTAAAGGAGTTGCAAGATAACATTGCTGCTGTAAGTTTTACTCCCCAAAGCAAGATGGGGAAGATGCTGATGGCTAAATGTAGAACCCTGCAAGAGGAAAATGAAGAGATTGGAAATCAAGCGTCTGAGGGGAAGATGCATGAATTAGGGATGAAACTTGCATTGCAGAAGTCCCAAAATTCACAACTTAGAAATCAATTTGAAGGGTTGCAGAAGCACATGGAAGGACTGACAAATGATGTGGAAAGATCCAATGAAATGGTTCTTATGTTACAAGAAAAATTAGAAGAGAAGGATCGGCAGATACAGAGACTAAAACATGAGATTAAACAGAAGAACTTGGAGGATCAAAGACTAAAACATGAGCTTCAACAGAAAAACTTGGAGGATCAAAGACTAAAACATGAACTTCAACAGAAGAACTTGGAGGATGGAAATGACAATAATGCCGGGGAGGCTGCTAACTAATTTGatatatatatatatatatatatatatatatatatatatatatTTACTGCTGTACATTATATTAATTTTTTTTGCGAAAACTGTGGATATTTATGAGGAATGATTATGCTTCTGCTTTGAATGGAATTATGGAAAATATAGTAGATGGAGCTACTTTTTAATACAATTCATGACATTTAGTCTGTTACAAGGGAGGGAGGTAGGGAAAAATTATAAATAGTAAACTTTCTAAATAAATTTCAAGATAGGGCAATGCTACCGTGGACCACCTTATAAGTGATCTAAAAAGTGCACATTTTTATTCACGGCTAGATTCATCTAATCCTCACTGATATAGCATGTACCTTGGATTATTCTCTCCCCAATTAGAAACTCTCCACCACCTGCAGCACCAGCCGACGACCCCATTACTGCTGTGTATATCTCAGAAACAGAAACTCCTCCTCCATTAGCTACACTGCCTTTGCCATTGCCGTGGTCTACTGCCTTCGCCTCCCAGAAAATACCGCAGTGTATTAAATATAAACCATTCAAATATTCACAAAACAAAAATTCCAAATTAGAATGCTTCACTTGAAAAGATCGTATGATCCTTTGTGAGGGAAAAAGAATCTCCAAAAACTATAAATCATATAAATTCACCTTAATCCCACAAGGCAAAAGAAAAAACAGGAGACAAATCATGAACATGT

Coding sequences of Glyma.04g186400

Limit To All Plant Sequences

>Glyma.04g186400.1 sequence-type=CDS polypeptide=Glyma.04g186400.1.p locus=Glyma.04g186400 ID=Glyma.04g186400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCCCCTACTCATTTCGACGATGACTTCGATTTCGGAGGCGGATTTGGCGGAAGGCATTCAGGTAATAAGAGGTCGTCTCCCGATTACGACGACGAGGATTATGACAACGATCCTTTTGCACCGAAGAAGGCTATAACAAAAGCTGAAGAAGCTTCTGGTGTAACAACAGGAATGATCTTGTCACTTCGTGAGAGTCTCCAGAACTGTAAGGATACACTTGCAACATGCCAAAATGAACTTGAGGCTGCAAAATCAGAGATTCAGAGTTGGCATTCTACACTTAAAAATCAGCCATCCATACTTGCCGGGATCACTCCAGAGCCCAAGATGTTGATTAATTATCTGCAGGCCTTGAAATCCTCTGAAGAGTCTTTAAGAGAGCAGCTTGAAAAGGCAAAGAAAAAGGAAGCTGCATTCATTGTAACATTTGCAAAACGAGAACAAGAGATAGCAGAGTTGAAGTCTGCGGTGCGAGATCTGAAAGTGCAACTCAAGCCACCATCAATGCAGGCTAGGAGGTTGTTACTAGATCCAGCTGTTCATGAAGAGTTCACGCGTTTAAAGAACTTAGTTGAGGAAAAGGATAAAAAAGTAAAGGAGTTGCAAGATAACATTGCTGCTGTAAGTTTTACTCCCCAAAGCAAGATGGGGAAGATGCTGATGGCTAAATGTAGAACCCTGCAAGAGGAAAATGAAGAGATTGGAAATCAAGCGTCTGAGGGGAAGATGCATGAATTAGGGATGAAACTTGCATTGCAGAAGTCCCAAAATTCACAACTTAGAAATCAATTTGAAGGGTTGCAGAAGCACATGGAAGGACTGACAAATGATGTGGAAAGATCCAATGAAATGGTTCTTATGTTACAAGAAAAATTAGAAGAGAAGGATCGGCAGATACAGAGACTAAAACATGAGATTAAACAGAAGAACTTGGAGGATCAAAGACTAAAACATGAGCTTCAACAGAAAAACTTGGAGGATCAAAGACTAAAACATGAACTTCAACAGAAGAACTTGGAGGATGGAAATGACAATAATGCCGGGGAGGCTGCTAACTAA

>Glyma.04g186400.2 sequence-type=CDS polypeptide=Glyma.04g186400.2.p locus=Glyma.04g186400 ID=Glyma.04g186400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATCTTGTCACTTCGTGAGAGTCTCCAGAACTGTAAGGATACACTTGCAACATGCCAAAATGAACTTGAGGCTGCAAAATCAGAGATTCAGAGTTGGCATTCTACACTTAAAAATCAGCCATCCATACTTGCCGGGATCACTCCAGAGCCCAAGATGTTGATTAATTATCTGCAGGCCTTGAAATCCTCTGAAGAGTCTTTAAGAGAGCAGCTTGAAAAGGCAAAGAAAAAGGAAGCTGCATTCATTGTAACATTTGCAAAACGAGAACAAGAGATAGCAGAGTTGAAGTCTGCGGTGCGAGATCTGAAAGTGCAACTCAAGCCACCATCAATGCAGGCTAGGAGGTTGTTACTAGATCCAGCTGTTCATGAAGAGTTCACGCGTTTAAAGAACTTAGTTGAGGAAAAGGATAAAAAAGTAAAGGAGTTGCAAGATAACATTGCTGCTGTAAGTTTTACTCCCCAAAGCAAGATGGGGAAGATGCTGATGGCTAAATGTAGAACCCTGCAAGAGGAAAATGAAGAGATTGGAAATCAAGCGTCTGAGGGGAAGATGCATGAATTAGGGATGAAACTTGCATTGCAGAAGTCCCAAAATTCACAACTTAGAAATCAATTTGAAGGGTTGCAGAAGCACATGGAAGGACTGACAAATGATGTGGAAAGATCCAATGAAATGGTTCTTATGTTACAAGAAAAATTAGAAGAGAAGGATCGGCAGATACAGAGACTAAAACATGAGATTAAACAGAAGAACTTGGAGGATCAAAGACTAAAACATGAGCTTCAACAGAAAAACTTGGAGGATCAAAGACTAAAACATGAACTTCAACAGAAGAACTTGGAGGATGGAAATGACAATAATGCCGGGGAGGCTGCTAACTAA

>Glyma.04g186400.3 sequence-type=CDS polypeptide=Glyma.04g186400.3.p locus=Glyma.04g186400 ID=Glyma.04g186400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCCCCTACTCATTTCGACGATGACTTCGATTTCGGAGGCGGATTTGGCGGAAGGCATTCAGGTAATAAGAGGTCGTCTCCCGATTACGACGACGAGGATTATGACAACGATCCTTTTGCACCGAAGAAGGCTATAACAAAAGCTGAAGAAGCTTCTGGTGTAACAACAGGAATGATCTTGTCACTTCGTGAGAGTCTCCAGAACTGTAAGGATACACTTGCAACATGCCAAAATGAACTTGAGGCTGCAAAATCAGAGATTCAGAGTTGGCATTCTACACTTAAAAATCAGCCATCCATACTTGCCGGGATCACTCCAGAGCCCAAGATGTTGATTAATTATCTGCAGGCCTTGAAATCCTCTGAAGAGTCTTTAAGAGAGCAGCTTGAAAAGGCAAAGAAAAAGGAAGCTGCATTCATTGTAACATTTGCAAAACGAGAACAAGAGATAGCAGAGTTGAAGTCTGCGGTGCGAGATCTGAAAGTGCAACTCAAGCCACCATCAATGCAGGCTAGGAGGTTGTTACTAGATCCAGCTGTTCATGAAGAGTTCACGCGTTTAAAGAACTTAGTTGAGGAAAAGGATAAAAAAGTAAAGGAGTTGCAAGATAACATTGCTGCTGTAAGTTTTACTCCCCAAAGCAAGATGGGGAAGATGCTGATGGCTAAATGTAGAACCCTGCAAGAGGAAAATGAAGAGATTGGAAATCAAGCGTCTGAGGGGAAGATGCATGAATTAGGGATGAAACTTGCATTGCAGAAGTCCCAAAATTCACAACTTAGAAATCAATTTGAAGGGTTGCAGAAGCACATGGAAGGACTGACAAATGATGTGGAAAGATCCAATGAAATGGTTCTTATGTTACAAGAAAAATTAGAAGAGAAGGATCGGCAGATACAGAGACTAAAACATGAGATTAAACAGAAGAACTTGGAGGATCAAAGACTAAAACATGAGCTTCAACAGAAAAACTTGGAGGATCAAAGACTAAAACATGAACTTCAACAGAAGAACTTGGAGGATGGAAATGACAATAATGCCGGGGAGGCTGCTAACTAA

Predicted protein sequences of Glyma.04g186400

Limit To All Plant Sequences

>Glyma.04g186400.1.p sequence-type=predicted peptide transcript=Glyma.04g186400.1 locus=Glyma.04g186400 ID=Glyma.04g186400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASPTHFDDDFDFGGGFGGRHSGNKRSSPDYDDEDYDNDPFAPKKAITKAEEASGVTTGMILSLRESLQNCKDTLATCQNELEAAKSEIQSWHSTLKNQPSILAGITPEPKMLINYLQALKSSEESLREQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKVQLKPPSMQARRLLLDPAVHEEFTRLKNLVEEKDKKVKELQDNIAAVSFTPQSKMGKMLMAKCRTLQEENEEIGNQASEGKMHELGMKLALQKSQNSQLRNQFEGLQKHMEGLTNDVERSNEMVLMLQEKLEEKDRQIQRLKHEIKQKNLEDQRLKHELQQKNLEDQRLKHELQQKNLEDGNDNNAGEAAN*

>Glyma.04g186400.2.p sequence-type=predicted peptide transcript=Glyma.04g186400.2 locus=Glyma.04g186400 ID=Glyma.04g186400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MILSLRESLQNCKDTLATCQNELEAAKSEIQSWHSTLKNQPSILAGITPEPKMLINYLQALKSSEESLREQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKVQLKPPSMQARRLLLDPAVHEEFTRLKNLVEEKDKKVKELQDNIAAVSFTPQSKMGKMLMAKCRTLQEENEEIGNQASEGKMHELGMKLALQKSQNSQLRNQFEGLQKHMEGLTNDVERSNEMVLMLQEKLEEKDRQIQRLKHEIKQKNLEDQRLKHELQQKNLEDQRLKHELQQKNLEDGNDNNAGEAAN*

>Glyma.04g186400.3.p sequence-type=predicted peptide transcript=Glyma.04g186400.3 locus=Glyma.04g186400 ID=Glyma.04g186400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASPTHFDDDFDFGGGFGGRHSGNKRSSPDYDDEDYDNDPFAPKKAITKAEEASGVTTGMILSLRESLQNCKDTLATCQNELEAAKSEIQSWHSTLKNQPSILAGITPEPKMLINYLQALKSSEESLREQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKVQLKPPSMQARRLLLDPAVHEEFTRLKNLVEEKDKKVKELQDNIAAVSFTPQSKMGKMLMAKCRTLQEENEEIGNQASEGKMHELGMKLALQKSQNSQLRNQFEGLQKHMEGLTNDVERSNEMVLMLQEKLEEKDRQIQRLKHEIKQKNLEDQRLKHELQQKNLEDQRLKHELQQKNLEDGNDNNAGEAAN*

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