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Report for Sequence Feature Glyma.04g186000

Feature Type:gene_model
Chromosome:Gm04
Start:45615287
stop:45620181
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g186000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G03340.1AT ATPase, AAA-type, CDC48 protein JGI N/AIEA
GO:0006281GO-bp DNA repair JGI N/AIEA
GO:0006310GO-bp DNA recombination JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0009378GO-mf four-way junction helicase activity JGI N/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016887GO-mf ATPase activity JGI N/AIEA
KOG0730 KOG AAA+-type ATPase JGI N/AIEA
PTHR23077Panther AAA-FAMILY ATPASE JGI N/AIEA
PTHR23077:SF18Panther JGI N/AIEA
PF00004PFAM ATPase family associated with various cellular activities (AAA) JGI N/AIEA
PF02359PFAM Cell division protein 48 (CDC48), N-terminal domain JGI N/AIEA
PF02933PFAM Cell division protein 48 (CDC48), domain 2 JGI N/AIEA
GN7V-58880SoyCyc9-rxn Vesicle-fusing ATPase Plant Metabolic Network ISS

Expression Patterns of Glyma.04g186000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g186000
ParalogEvidenceComments
Glyma.06g180000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g186000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g35950 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g186000
>Glyma.04g186000.1 sequence-type=CDS polypeptide=Glyma.04g186000.1.p locus=Glyma.04g186000 ID=Glyma.04g186000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGATCCAACCTCATCTAACCCTGATAAGGATCAATCCTCTACGGAACCGAAAAGTGAAAAGAAGGATTATTCCACAGCAATATTAGAACGCAAGAAGTCTCCTAACCGACTTGTTGTTGATGAAGCAATTAATGATGAAAATTCTGTGGTTACTTTGCACCCTGAAACAATGGAGAAGCTTCAGTTTTTCCGGGGTGACACTGTTCTGATAAAGGGAAAGAAGCGAAGGGACACAATTTGTGTTGTTCTTGCTGATGAACAATGTGATGAACCAAAAATAAGAATGAATAAGGTTGTTCGGGCTAATCTTAGAGTGAGACTTGGAGATGTTGTCTCTGTCCATCAATGTCCCGATGTAAAGTACGGGAAACGAGTTCACATCCTTCCAATTGATGACACCATTGAGGGTGTAACTGGCAACTTGTTTGATGCATATCTGAAGCCTTACTTTATGGAGTCATACCGGCCAGTGAGGAAAGGTGACTTGTTCCTTGTTCGGGGTGGGATGCGCAGCATTGAATTCAAGCTAATAGAGACTGACCCTGGTGAATACTGTGTTGTGGCACCTGATACTGAAATCTTCTGCGAGGGAGAGCCAATCAAACGGGAAGATGAAGAAAGACTAAATGATGTTGGCTATGATGATGTTGGTGGTGTTAGAAAACAAATGGCTCAAATTCGTGAGCTGGTAGAACTTCCACTTAGACATCCTCAGCTCTTCAAATCAATTGGAGTTAAGCCCCCAAAAGGAATCTTGCTTTATGGACCACCTGGTTCAGGAAAGACTCTGATTGCGAGAGCAGTTGCTAATGAGACTGGTGCATTCTTCTTTTTGATTAATGGACCAGAAATCATGTCGAAGCTGGCCGGTGAGAGTGAAAGCAATCTGAGGAAGGCATTTGAAGAAGCTGAAAAGAATTCCCCTTCTATCATTTTTATTGATGAATTAGACTCGATTGCTCCAAAGAGAGAAAAGACACATGGTGAAGTGGAGAGGCGTATCGTTTCACAACTTTTGACTCTTATGGATGGCCTCAAGACCCGATCACATGTTATCGTTATTGGAGCCACAAATAGGCCTAATAGTATTGATCCTGCTTTGAGAAGGTTTGGAAGGTTTGATCGTGAGATTGACATTGGTGTACCGGATGAAGTTGGAAGGTTGGAGGTTCTTAGAATTCATACAAAGAACATGAAACTTTCAGACAATGTTGATCTTGAAAAAGTTGCCAGAGACACCCATGGTTATGTTGGAGCAGATCTTGCTGCTCTTTGCACAGAGGCTGCATTACAGTGTATCCGGGAGAAAATGGATGTGATTGACTTAGAGGATGAAACAATCGATGCTGAGGTGTTGAATTCCATGGCTGTGACTAATGAACACTTTCAAACTGCTTTAAGTTCTTCAAACCCATCTGCTCTGCGTGAAACAGTTGTGGAGGTTCCAAATGTTTCCTGGGATGATATTGGAGGCTTAGAGAATGTCAAGAGGGAGCTTCAGGAGACTGTTCAATACCCAGTGGAACATCCTGAGAAGTTTGAGAAATTTGGCATGTCACCTTCCAAAGGTGTTCTCTTTTATGGACCTCCTGGCTGTGGTAAAACCCTGCTTGCAAAAGCAATTGCTAATGAGTGCCAGGCCAACTTTATAAGTGTTAAGGGACCTGAGTTGCTGACAATGTGGTTTGGTGAAAGTGAGGCAAATGTTCGCGAGATATTTGACAAGGCTCGGCAGTCAGCTCCATGTGTGCTTTTCTTCGACGAACTTGACTCTATTGCAACTCAACGAGGCAGTTCTGTAGGGGACGCTGGTGGTGCTGCCGATAGGGTGTTGAACCAACTCTTAACAGAAATGGATGGTATGACAGCTAAGAAAACAGTTTTCATCATAGGGGCAACAAACAGACCAGACATTATAGACCCTGCATTGCTCAGGCCCGGACGTCTGGATCAATTGATTTACATCCCTTTACCGGATGAAAGTTCACGTCTTCAAATCTTCAAGGCATGCTTGAGGAAGTCACCAATCTCAAAGGATGTTGACCTATCAGCTCTTGCCCGTTTTACTCATGGATTCAGTGGTGCAGACATTACAGAAATTTGTCAACGAGCGTGCAAATATGCCATTAGGGAAGATATTGAAAAGGGTATTGAGAAGGAGAGAAGAAAAAGAGAGAATCCTGAAGCCATGGAAGAAGATGACACTGATGAGGTCCCTGAGATAAAGCCTGCCCACTTTGAGGAGTCTATGAAGTTTGCTCGCCGGAGTGTCAGCGACGCAGACATAAGGAAATACCAACTCTTTGCTCAGACCTTGCAACAGTCTCGGGGATTTGGATCTGAGTTTCGGTTTCCAGATCAAAATGAGAACACTGCAGCAGGTGCCTCAGACCCTTTCTCATCTGTTACAGCTGAGGGAGATGATGATTTGTACAGTTAG
Predicted protein sequences of Glyma.04g186000
>Glyma.04g186000.1.p sequence-type=predicted peptide transcript=Glyma.04g186000.1 locus=Glyma.04g186000 ID=Glyma.04g186000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADPTSSNPDKDQSSTEPKSEKKDYSTAILERKKSPNRLVVDEAINDENSVVTLHPETMEKLQFFRGDTVLIKGKKRRDTICVVLADEQCDEPKIRMNKVVRANLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAYLKPYFMESYRPVRKGDLFLVRGGMRSIEFKLIETDPGEYCVVAPDTEIFCEGEPIKREDEERLNDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKTRSHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDNVDLEKVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALSSSNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDESSRLQIFKACLRKSPISKDVDLSALARFTHGFSGADITEICQRACKYAIREDIEKGIEKERRKRENPEAMEEDDTDEVPEIKPAHFEESMKFARRSVSDADIRKYQLFAQTLQQSRGFGSEFRFPDQNENTAAGASDPFSSVTAEGDDDLYS*






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