Glyma.04g180500

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Report for Sequence Feature Glyma.04g180500

Feature Type:	gene_model
Chromosome:	Gm04
Start:	44625427
stop:	44626807
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.04g180500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G70310.1	AT	spermidine synthase 2	JGI	N/A	IEA
GO:0006596	GO-bp	polyamine biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0003824	GO-mf	catalytic activity	JGI	N/A	IEA
GO:0004766	GO-mf	spermidine synthase activity	EnsemblGenomes	N/A	IEA
GO:0016740	GO-mf	transferase activity	EnsemblGenomes	N/A	IEA
PTHR11558	Panther	SPERMIDINE/SPERMINE SYNTHASE	JGI	N/A	IEA
PTHR11558:SF11	Panther	SPERMIDINE SYNTHASE	JGI	N/A	IEA
PF01564	PFAM	Spermine/spermidine synthase	JGI	N/A	IEA
BSUBPOLYAMSYN-PWY	SoyCyc9	spermidine biosynthesis I	Plant Metabolic Network		ISS
POLYAMINSYN3-PWY	SoyCyc9	superpathway of polyamine biosynthesis II	Plant Metabolic Network		ISS
PWY-7528	SoyCyc9	L-methionine salvage cycle I (bacteria and plants)	Plant Metabolic Network		ISS
GN7V-48134	SoyCyc9-rxn	spermidine synthase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.04g180500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g180500 not represented in the dataset	Glyma.04g180500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.04g180500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma04g35140	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.04g180500

Limit To All Plant Sequences

>Glyma.04g180500.2 sequence-type=transcript locus=Glyma.04g180500 ID=Glyma.04g180500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATTAGAAGAACTAAAATAAAATAACAATGACTAAAAGAAAAAAAAAGGAATCTTATAATAAAGAATTGATTACATTATAAGAAATAAAACTATATTCATGAGCAAGGTTAGTAAACTCAAAAGTTCATGTAAATTTATAAAATTTGTGTAAACTCGACTCGTAAAGTTGACTAGTAGACTCGTAAGATTTATATAATAAAAAATAATTTAAAAACCTATTAATTAATAATTAACCAAAAAGATCAAACGTGTTACTCCCACAGCTGAGACACTTTCTAACAAGCCTATTAAAAAAATACTTTCTAACAAAAGGATCAACCTCACATTTGATTTTGTTTTTGTTTTTCATAATCTATGTTCTTCCTCTCTACTAGTTATTTTCCTTTGTTTTTAGGCTGTCTTATTCACCGATAATTGGAGATGATCTATGTTTCTATATATAATATTCACCGATGCATCTTTCAATAAAGCTAACCAAATTACGTGTATTGCAGGCCGAGCACACTTCTTGAAGGTAGAAAAGATTTGTTTCCAAGGGAAATCTGAATACCAGACTATGCTAGTTTTTCAGTCATCAACATATGGTAAGGTTTTTGTCCTTGATGGAGCACTCCAACTCACAGAGAAGGACGAATGTGCTTACCAAGAAATGATGACTCACCTTCCTCTTTGCTCTATCCTTAACCCAAAAAAGGTTTCGTATGAGACAAATACATAGTCTTACGTACATTTCAATTTTCAATATTGCATATTAGTCTATAACTATATATGACTAACCATAATCTGTGGAAATTAATTAATCTCTAAGATTATCTACCCTCACTTCTCATATATGTTTAGGTGCTGCTTATTGGTGGTGGAGATGGTGGCATTCTAAGGGAAATTTCCCGCCACTCGTCCGTTGAACAAATCGACATATGTGAAATAGACACAATGCTGATTGATGTAAATAAAATGTTTGACTCCTTAATTTCCCTTGAATAAAGAGTCAAATTTTGACTTTATGTACACTTATCGCGTAATTAAAGTGTCCAACTGTTTGTATAAAGGATATAAAAGTTATATTCATTCCTTAAGTATTTTTAGTATTATTTTTAATCTAAATTAAAATTTTACTTTAATAATTTATATGCATCTTTAATATAAAATTTTATTACACGGATTATTGAAGTAAAAGTACAATTTTGATTGAAGAAGACTTAAGAAACTACATTTAAGTTTAGTCATAACTTCCTCTTTTCTTATTTATAAGA

Coding sequences of Glyma.04g180500

Limit To All Plant Sequences

>Glyma.04g180500.1 sequence-type=CDS polypeptide=Glyma.04g180500.1.p locus=Glyma.04g180500 ID=Glyma.04g180500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTTCTATATATAATATTCACCGATGCATCTTTCAATAAAGCTAACCAAATTACGTGTATTGCAGGCCGAGCACACTTCTTGAAGGTAGAAAAGATTTGTTTCCAAGGGAAATCTGAATACCAGACTATGCTAGTTTTTCAGTCATCAACATATGGTAAGGTTTTTGTCCTTGATGGAGCACTCCAACTCACAGAGAAGGACGAATGTGCTTACCAAGAAATGATGACTCACCTTCCTCTTTGCTCTATCCTTAACCCAAAAAAGGTGCTGCTTATTGGTGGTGGAGATGGTGGCATTCTAAGGGAAATTTCCCGCCACTCGTCCGTTGAACAAATCGACATATGTGAAATAGACACAATGCTGATTGATGTAAATAAAATGTTTGACTCCTTAATTTCCCTTGAATAA

>Glyma.04g180500.2 sequence-type=CDS polypeptide=Glyma.04g180500.2.p locus=Glyma.04g180500 ID=Glyma.04g180500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTTCTATATATAATATTCACCGATGCATCTTTCAATAAAGCTAACCAAATTACGTGTATTGCAGGCCGAGCACACTTCTTGAAGGTAGAAAAGATTTGTTTCCAAGGGAAATCTGAATACCAGACTATGCTAGTTTTTCAGTCATCAACATATGGTAAGGTTTTTGTCCTTGATGGAGCACTCCAACTCACAGAGAAGGACGAATGTGCTTACCAAGAAATGATGACTCACCTTCCTCTTTGCTCTATCCTTAACCCAAAAAAGGTTTCGTATGAGACAAATACATAG

Predicted protein sequences of Glyma.04g180500

Limit To All Plant Sequences

>Glyma.04g180500.1.p sequence-type=predicted peptide transcript=Glyma.04g180500.1 locus=Glyma.04g180500 ID=Glyma.04g180500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFLYIIFTDASFNKANQITCIAGRAHFLKVEKICFQGKSEYQTMLVFQSSTYGKVFVLDGALQLTEKDECAYQEMMTHLPLCSILNPKKVLLIGGGDGGILREISRHSSVEQIDICEIDTMLIDVNKMFDSLISLE*

>Glyma.04g180500.2.p sequence-type=predicted peptide transcript=Glyma.04g180500.2 locus=Glyma.04g180500 ID=Glyma.04g180500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFLYIIFTDASFNKANQITCIAGRAHFLKVEKICFQGKSEYQTMLVFQSSTYGKVFVLDGALQLTEKDECAYQEMMTHLPLCSILNPKKVSYETNT*

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