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Report for Sequence Feature Glyma.04g173900

Feature Type:gene_model
Chromosome:Gm04
Start:42368538
stop:42371615
Source:JGI
Version:Wm82.a4.v1
High confidence:yes



Annotations for Glyma.04g173900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G15110.1AT JGI N/AIEA
4.2.2.2EC pectate lyase JGI N/AIEA
GO:0030570GO-mf pectate lyase activity JGI N/AIEA
K01728KEGG Quorum sensing JGI N/AIEA
PTHR31683PantherFam PECTATE LYASE 18-RELATED JGI N/AIEA
PF00544Pfam Pectate lyase JGI N/AIEA
PF04431Pfam Pectate lyase, N terminus JGI N/AIEA

Gene model name correspondences to Glyma.04g173900 Gene Call Version Wm82.a4.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g34260 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g173900
>Glyma.04g173900.1 sequence-type=CDS polypeptide=Glyma.04g173900.1.p locus=Glyma.04g173900 id=Glyma.04g173900.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGGAAACTAGCAAGTTCAGTTTGCTATTCTTTTACGTAATTTGTCTTGCTATATTCCCTACCCTTAACGCTAACATAGGTCACTTCGATCATGTCTGGCATAGGCGATTAAAAGAAGCAAGAGAAGCCGCAAAACAAGCTTACAAGCCGAACCCCATGAAAGTTACCGCTGAGTTCAATACACATGTCATCAGGGCAATGAGAGGCTCCAACAACTCAAGAAGGGGCTTATCAAACCAATACGATGGTCCATGCAAGGCGACAAACCCCATTGACAAATGTTGGAGATGTGACCCCAATTGGGAGAAAAACCGCAAGAGGCTAGCAGATTGTGCCCTAGGCTTTGGCCATGGCACAACAGGGGGCAAAGATGGCAAAATTTACGTGGTTAACGACTCTTCCGACAATGACCTCGTAAACCCTAAACCAGGGACATTGAGACATGCTGCAATTCAAAGAGAGCCACTGTGGATCATTTTTGATCGAAACATGAACATTAAACTTCACGCGGAGCTCATGCTAACGGATAATAAGACCATAGATGCACGTGGTGCCAATGTGCACATTAGTGAGGGTGCCCAAATAACGTTGCAATATGTGAAAAACATCATCATTCACGGTCTGCACATTCATGACATTAAGAAATGTAGTGGTGGCCTCATCAGAGACTCCATGGATCACTATGGAGTCCGTGCCATGAGTGATGGGGATGCCATTTCGGTGTTTGGATCCACATATGTTTGGATAGATCATGTTTCCTTTACCAACTGCGATGACGGCCTCATCGATGTCGTTAGCGCTTCAACTGCTGTTACCATCTCCAACTGCCATCTTACCAAACATAACGATGTATTATTATTTGGTGCGAGTGATAGCTACTCGGGGGATAAAATCATGCAAGTGACTTTGGCTTTCAATCATTTCGGGAAAGGATTGATTCAGAGGATGCCAAGGTGCAGATGGGGCTTCTTTCATATTGTTAACAATGACTACACGCATTGGCTAATGTACGCCATAGGTGGTAGCCAACAACCCACCATCATCAGCCAGGGCAACCGGTTTATCGCCCCAAATGACCGAAATGCCAAAGAAGTGACAAAAAGGGACTATGCACCAGAAAGTGTGTGGAAGAACTGGAATTGGAGATCAGAGGGTGATTTATTGATGAATGGAGCCTTCTTTGTTCAGTCTGGGAAAAACGTAGCAAAAAATCCCAAGGCAGAAATCATAGCAAAGCCTGGGAAAGCCGTATCGAGTCTCACTCGCTTTGCAGGTCCTCTAAAATGTGAAGTAAACAAGTCGTGTTGA
Predicted protein sequences of Glyma.04g173900
>Glyma.04g173900.1.p sequence-type=predicted peptide transcript=Glyma.04g173900.1 locus=Glyma.04g173900 id=Glyma.04g173900.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
METSKFSLLFFYVICLAIFPTLNANIGHFDHVWHRRLKEAREAAKQAYKPNPMKVTAEFNTHVIRAMRGSNNSRRGLSNQYDGPCKATNPIDKCWRCDPNWEKNRKRLADCALGFGHGTTGGKDGKIYVVNDSSDNDLVNPKPGTLRHAAIQREPLWIIFDRNMNIKLHAELMLTDNKTIDARGANVHISEGAQITLQYVKNIIIHGLHIHDIKKCSGGLIRDSMDHYGVRAMSDGDAISVFGSTYVWIDHVSFTNCDDGLIDVVSASTAVTISNCHLTKHNDVLLFGASDSYSGDKIMQVTLAFNHFGKGLIQRMPRCRWGFFHIVNNDYTHWLMYAIGGSQQPTIISQGNRFIAPNDRNAKEVTKRDYAPESVWKNWNWRSEGDLLMNGAFFVQSGKNVAKNPKAEIIAKPGKAVSSLTRFAGPLKCEVNKSC*






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