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Report for Sequence Feature Glyma.04g173300

Feature Type:gene_model
Chromosome:Gm04
Start:43367265
stop:43372330
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g173300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G02760.1AT ubiquiting-conjugating enzyme 2 JGI N/AIEA
GO:0000209GO-bp protein polyubiquitination EnsemblGenomesN/AIEA
GO:0006281GO-bp DNA repair EnsemblGenomesN/AIEA
GO:0016574GO-bp histone ubiquitination EnsemblGenomesN/AIEA
GO:0043161GO-bp proteasome-mediated ubiquitin-dependent protein catabolic process EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016881GO-mf acid-amino acid ligase activity JGI N/AIEA
GO:0031625GO-mf ubiquitin protein ligase binding EnsemblGenomesN/AIEA
GO:0061630GO-mf ubiquitin protein ligase activity EnsemblGenomesN/AIEA
KOG0419 KOG Ubiquitin-protein ligase JGI N/AIEA
PTHR24067Panther UBIQUITIN-CONJUGATING ENZYME E2 JGI N/AIEA
PF00179PFAM Ubiquitin-conjugating enzyme JGI N/AIEA

Expression Patterns of Glyma.04g173300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g173300
ParalogEvidenceComments
Glyma.06g190900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g173300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g34170 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g173300
>Glyma.04g173300.1 sequence-type=CDS polypeptide=Glyma.04g173300.1.p locus=Glyma.04g173300 ID=Glyma.04g173300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGACTCCTGCTAGGAAGAGGCTGATGAGAGACTTCAAGAGGCTGCAACAAGACCCGCCTGCAGGGATCAGCGGTGCCCCCCAGGATAACAACATAATGCTGTGGAATGCTGTCATATTTGGTCCTGATGATACTCCATGGGATGGAGGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCACCAACTGTGCGATTTGTGTCTCGCATGTTTCATCCAAATATTTATGCTGATGGAAGTATTTGTTTGGATATACTACAAAATCAGTGGAGTCCTATATATGATGTGGCTGCTATACTCACATCTATCCAGTCATTGCTTTGTGATCCCAACCCAAATTCTCCTGCAAACTCTGAAGCAGCTCGAATGTTTAGCGAGAACAAGCGTGAATACAATCGAAGAGTGAGGGAAATCGTGGAGCAGAGTTGGACAGCCGACTAA
Predicted protein sequences of Glyma.04g173300
>Glyma.04g173300.1.p sequence-type=predicted peptide transcript=Glyma.04g173300.1 locus=Glyma.04g173300 ID=Glyma.04g173300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD*






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