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Report for Sequence Feature Glyma.04g173100

Feature Type:gene_model
Chromosome:Gm04
Start:43294619
stop:43302116
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g173100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G74690.1AT IQ-domain 31 JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
PTHR13140Panther MYOSIN JGI N/AIEA
PTHR13140:SF187Panther JGI N/AIEA
PF00612PFAM IQ calmodulin-binding motif JGI N/AIEA

Proteins Associated with Glyma.04g173100
LocusGene SymbolProtein Name
IQD12 protein IQ-DOMAIN 12

Expression Patterns of Glyma.04g173100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g173100
ParalogEvidenceComments
Glyma.06g191200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g173100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g34150 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g173100
>Glyma.04g173100.2 sequence-type=transcript locus=Glyma.04g173100 ID=Glyma.04g173100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AACCACTGCCCCAAAACGCACCGTATCAACAGTTACACCCTCCACCGTACGATCGAGTCAAGTCATCACATCAACGGCTACAACAAGATTTGCCGCCAAATTTTCAGTTAGTGTTGACCACACGCCGTCGTTTCCCAAACGGAACAAAATAATCCAAGCTTTTTTTCAGTTTTGGTTTCAGTTTATACATTAGTTGTTGTTGTTTTTATTATTTTTCAAAAATTGTAACTTTCACTCTCTCTCAGAGAATGATGACAGCATGCAAATGCATCATCAAACAACTAATAAATTGATGAAGCCTTAGGTCACATTTTACTTTCTCAGTTCTCATTATTTTCAGTTTCACTCTCTCTTCTCTTCCATGGAATCGTAAGATTTGAGGACAAGAGCTTCCACGTTTATCAGGTTGTGATCTCAAAATGGGGAAATCACCAGGAAAATGGATCAAGACCGTACTATTTGGGAAAAAGTCATCCAAATCAAATATTTCAAAAGGAAGAGAGAAGTTTGTTAATAAAAAAGAAGCAGTGGTTTCTTCCAACGAGTTGGAAAATGGTTTGTCTTTAGATCCAACCCCCGATGAGATTGCTACAAATGAGGAGGACCATGAACTGGAGAATGAAGAATCAGAAAATATTTTACCTGACAATCAAGAAAGAGACATTATTGGATCTGTTGACCCGGATGCACCACCTGATCCAGAGAAAATCAGGCTGGAGCAAGCAGCATCAAAGGCACAAGCTGCTTTCAGGGGTTACTTGGCACGAAGGGCATTTAGGGCCCTGAAAGGCATAATAAGGTTGCAAGCACTTATTCGTGGGCACTTGGTTAGGAAACAAGCCGTTGTTACATTATGCTGCATGTATGGAATTGTAAAGTTACAAGCACTTGTCCGTGGAGGAAGGATTAGACAGTCTAATGACTTCCATGAGAAGTGCAATCTATTTAAGCCTCTGGATGCAAAACTTGGTGAGCCAGTTGGTATCTCCACAAAAATTTCAAAGCTGACTGCAAATACTTTCATCCATAAGCTTCTTGCTTCATCAATTACAATAATGGCACTGCAACTGCAATATGTTAATGGAGATCCAAATTCAGTCTTAAGTTGGTTGGAGCGCTGGTCAGCATCTTACTTTTGGAAACCAGTTCCCCAACCCAAGAAAATTCGAGACTCTAAATCTCAGAGAAAGCAGGGTAATGTTTCAAATGGGGAAGCTCAAATTACCAAGTCAAAACGCACTACCAGGAAGCTTCCTATTGCAAATTTTGAAACAGCCCTGGAGCAAACAAATCCTGAATTCGAGAAACCAAAACGTAATTTCAGGAAAACACCATACCAAGTGTCAGATCCAGAGCAAGAAAATCCACAAAGTGAGCTTGAAAAGGTTAAACGTAGCTTGAGAAAGATTCATAACCCTGTTGTTGAGAATGCTGGTCAGCCAGAAGTTGAAAGTGAGACCCCCAAGCAGCATTTGGAAATGACGAAAGTTATTCCGGGTCACGCTGTTTTAGAACAAGCGACCATTACTTCTGATGATAAGATCAAGATGGAAGAAACTTCAACCATCTCGAATGTGCCTGATGTCGAAATCACTCCAATACCATCAGTCAACAAGGAAGTGTCTGAGATTCTAAACAATTATCAAGTGTCTGTAGAATCAAAGCCCTTGTCAGAGACTCCAACTAAAGATAGGAACACTTCTCATGACGAAGTTAAAAACAAGCTAGGCAACCTACCAGAGACTATTTTCAAAGATGAAAACTCCCTATTAACAAATGGAGATTTGAGTCATAGTGATCTGACAGGTAATGAAAACCAGAAACCTACCCGTAAAATCTCAAATTTGACAAAGCAGGAGAATGGAGAAGACGGCATAAAGAACAGTCCAAAATTACCAAGTTATATGGCAGCAACTGAATCTGCCAAGGCAAAGTTGAGGGCACAAGGGTCCCCAAGGTTTGGACAAGATGGGACTGAGAAAAACAACACTGCTGGTGGTTCTGGGAGGCATTCTCTGCCATCTTCAACTAACAACCAGATTAGTTCGCATTCACCTAAGCCACAGAGATCAGTTCCGGCAGGTGGCAAAGGGGGAAACAAAAGTGACAGAACAGTACCATCTTCTAAAGCAGGGAATGGGAAGGTAACTCAAGCTGAGTGGAGGAGGTAAGTGAGGGAAACCTGGTTTTCAGGTATTGAACACGAGGAGGTTGAAAATTGTGTGGGGTCGTCTTTGATTAAAGTTGCTGAAATCATAGGACCATTGTATGAGCTGGTTTGATCAGCTTATTTTCCCTGAATTCTGGGTTGTGAGTTGTACAATATAGGTTTTAAGTTTTGCATGCTGCAACTTTTAATGTCTTATGTTCTGTTTGTCTCTGGCATGATTCCTTGTCTGTCCATATTGTACCTTATCTGTGTTCCCCAAACTTCCGTGTTTGGACAAGTATGATCTGGTAACACGAATACTTTCACACAAGATTTCTTCGGCCTTCAGAAAATTTCTTTTGGCATTTCAACTCTTCAGGTGCGTAGTGGAGGATAGATCTTATTGTAGTGTCTAGCTAGTGTAACGACAAAAAATATCACTAAACACAGTGACTTGCTGAATAATACGATCTGCCCTTATTTAGTAATACAGAGACTGATATCAGTGTAGCAGCAGAAGTAACAAAGAATGAAGGAAACCTAAAGGGTGATATTGCTTATTGTTTGCTGGGTGggaggtttcttccataaaccattttaattggagtgaagcactaactagtatgaaaagtagtgttgtattgtacgaatattctgtccttgttaagcacttggaccaacttctaggattttggaatgtaaagcatattaaatacaatttaaggcactattttggttcttat
Coding sequences of Glyma.04g173100
>Glyma.04g173100.1 sequence-type=CDS polypeptide=Glyma.04g173100.1.p locus=Glyma.04g173100 ID=Glyma.04g173100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGAAATCACCAGGAAAATGGATCAAGACCGTACTATTTGGGAAAAAGTCATCCAAATCAAATATTTCAAAAGGAAGAGAGAAGTTTGTTAATAAAAAAGAAGCAGTGGTTTCTTCCAACGAGTTGGAAAATGGTTTGTCTTTAGATCCAACCCCCGATGAGATTGCTACAAATGAGGAGGACCATGAACTGGAGAATGAAGAATCAGAAAATATTTTACCTGACAATCAAGAAAGAGACATTATTGGATCTGTTGACCCGGATGCACCACCTGATCCAGAGAAAATCAGGCTGGAGCAAGCAGCATCAAAGGCACAAGCTGCTTTCAGGGGTTACTTGGCACGAAGGGCATTTAGGGCCCTGAAAGGCATAATAAGGTTGCAAGCACTTATTCGTGGGCACTTGGTTAGGAAACAAGCCGTTGTTACATTATGCTGCATGTATGGAATTGTAAAGTTACAAGCACTTGTCCGTGGAGGAAGGATTAGACAGTCTAATGACTTCCATGAGAAGTGCAATCTATTTAAGCCTCTGGATGCAAAACTTGGTGAGCCAGTTGGTATCTCCACAAAAATTTCAAAGCTGACTGCAAATACTTTCATCCATAAGCTTCTTGCTTCATCAATTACAATAATGGCACTGCAACTGCAATATGTTAATGGAGATCCAAATTCAGTCTTAAGTTGGTTGGAGCGCTGGTCAGCATCTTACTTTTGGAAACCAGTTCCCCAACCCAAGAAAATTCGAGACTCTAAATCTCAGAGAAAGCAGGGTAATGTTTCAAATGGGGAAGCTCAAATTACCAAGTCAAAACGCACTACCAGGAAGCTTCCTATTGCAAATTTTGAAACAGCCCTGGAGCAAACAAATCCTGAATTCGAGAAACCAAAACGTAATTTCAGGAAAACACCATACCAAGTGTCAGATCCAGAGCAAGAAAATCCACAAAGTGAGCTTGAAAAGGTTAAACGTAGCTTGAGAAAGATTCATAACCCTGTTGTTGAGAATGCTGGTCAGCCAGAAGTTGAAAGTGAGACCCCCAAGCAGCATTTGGAAATGACGAAAGTTATTCCGGGTCACGCTGTTTTAGAACAAGCGACCATTACTTCTGATGATAAGATCAAGATGGAAGAAACTTCAACCATCTCGAATGTGCCTGATGTCGAAATCACTCCAATACCATCAGTCAACAAGGAAGTGTCTGAGATTCTAAACAATTATCAAGTGTCTGTAGAATCAAAGCCCTTGTCAGAGACTCCAACTAAAGATAGGAACACTTCTCATGACGAAGTTAAAAACAAGCTAGGCAACCTACCAGAGACTATTTTCAAAGATGAAAACTCCCTATTAACAAATGGAGATTTGAGTCATAGTGATCTGACAGGTAATGAAAACCAGAAACCTACCCGTAAAATCTCAAATTTGACAAAGCAGGAGAATGGAGAAGACGGCATAAAGAACAGTCCAAAATTACCAAGTTATATGGCAGCAACTGAATCTGCCAAGGCAAAGTTGAGGGCACAAGGGTCCCCAAGGTTTGGACAAGATGGGACTGAGAAAAACAACACTGCTGGTGGTTCTGGGAGGCATTCTCTGCCATCTTCAACTAACAACCAGATTAGTTCGCATTCACCTAAGCCACAGAGATCAGTTCCGGCAGGTGGCAAAGGGGGAAACAAAAGTGACAGAACAGTACCATCTTCTAAAGCAGGGAATGGGAAGGTAACTCAAGCTGAGTGGAGGAGGTAA

>Glyma.04g173100.2 sequence-type=CDS polypeptide=Glyma.04g173100.2.p locus=Glyma.04g173100 ID=Glyma.04g173100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGAAATCACCAGGAAAATGGATCAAGACCGTACTATTTGGGAAAAAGTCATCCAAATCAAATATTTCAAAAGGAAGAGAGAAGTTTGTTAATAAAAAAGAAGCAGTGGTTTCTTCCAACGAGTTGGAAAATGGTTTGTCTTTAGATCCAACCCCCGATGAGATTGCTACAAATGAGGAGGACCATGAACTGGAGAATGAAGAATCAGAAAATATTTTACCTGACAATCAAGAAAGAGACATTATTGGATCTGTTGACCCGGATGCACCACCTGATCCAGAGAAAATCAGGCTGGAGCAAGCAGCATCAAAGGCACAAGCTGCTTTCAGGGGTTACTTGGCACGAAGGGCATTTAGGGCCCTGAAAGGCATAATAAGGTTGCAAGCACTTATTCGTGGGCACTTGGTTAGGAAACAAGCCGTTGTTACATTATGCTGCATGTATGGAATTGTAAAGTTACAAGCACTTGTCCGTGGAGGAAGGATTAGACAGTCTAATGACTTCCATGAGAAGTGCAATCTATTTAAGCCTCTGGATGCAAAACTTGGTGAGCCAGTTGGTATCTCCACAAAAATTTCAAAGCTGACTGCAAATACTTTCATCCATAAGCTTCTTGCTTCATCAATTACAATAATGGCACTGCAACTGCAATATGTTAATGGAGATCCAAATTCAGTCTTAAGTTGGTTGGAGCGCTGGTCAGCATCTTACTTTTGGAAACCAGTTCCCCAACCCAAGAAAATTCGAGACTCTAAATCTCAGAGAAAGCAGGGTAATGTTTCAAATGGGGAAGCTCAAATTACCAAGTCAAAACGCACTACCAGGAAGCTTCCTATTGCAAATTTTGAAACAGCCCTGGAGCAAACAAATCCTGAATTCGAGAAACCAAAACGTAATTTCAGGAAAACACCATACCAAGTGTCAGATCCAGAGCAAGAAAATCCACAAAGTGAGCTTGAAAAGGTTAAACGTAGCTTGAGAAAGATTCATAACCCTGTTGTTGAGAATGCTGGTCAGCCAGAAGTTGAAAGTGAGACCCCCAAGCAGCATTTGGAAATGACGAAAGTTATTCCGGGTCACGCTGTTTTAGAACAAGCGACCATTACTTCTGATGATAAGATCAAGATGGAAGAAACTTCAACCATCTCGAATGTGCCTGATGTCGAAATCACTCCAATACCATCAGTCAACAAGGAAGTGTCTGAGATTCTAAACAATTATCAAGTGTCTGTAGAATCAAAGCCCTTGTCAGAGACTCCAACTAAAGATAGGAACACTTCTCATGACGAAGTTAAAAACAAGCTAGGCAACCTACCAGAGACTATTTTCAAAGATGAAAACTCCCTATTAACAAATGGAGATTTGAGTCATAGTGATCTGACAGGTAATGAAAACCAGAAACCTACCCGTAAAATCTCAAATTTGACAAAGCAGGAGAATGGAGAAGACGGCATAAAGAACAGTCCAAAATTACCAAGTTATATGGCAGCAACTGAATCTGCCAAGGCAAAGTTGAGGGCACAAGGGTCCCCAAGGTTTGGACAAGATGGGACTGAGAAAAACAACACTGCTGGTGGTTCTGGGAGGCATTCTCTGCCATCTTCAACTAACAACCAGATTAGTTCGCATTCACCTAAGCCACAGAGATCAGTTCCGGCAGGTGGCAAAGGGGGAAACAAAAGTGACAGAACAGTACCATCTTCTAAAGCAGGGAATGGGAAGGTAACTCAAGCTGAGTGGAGGAGGTAA
Predicted protein sequences of Glyma.04g173100
>Glyma.04g173100.1.p sequence-type=predicted peptide transcript=Glyma.04g173100.1 locus=Glyma.04g173100 ID=Glyma.04g173100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGKSPGKWIKTVLFGKKSSKSNISKGREKFVNKKEAVVSSNELENGLSLDPTPDEIATNEEDHELENEESENILPDNQERDIIGSVDPDAPPDPEKIRLEQAASKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRKQAVVTLCCMYGIVKLQALVRGGRIRQSNDFHEKCNLFKPLDAKLGEPVGISTKISKLTANTFIHKLLASSITIMALQLQYVNGDPNSVLSWLERWSASYFWKPVPQPKKIRDSKSQRKQGNVSNGEAQITKSKRTTRKLPIANFETALEQTNPEFEKPKRNFRKTPYQVSDPEQENPQSELEKVKRSLRKIHNPVVENAGQPEVESETPKQHLEMTKVIPGHAVLEQATITSDDKIKMEETSTISNVPDVEITPIPSVNKEVSEILNNYQVSVESKPLSETPTKDRNTSHDEVKNKLGNLPETIFKDENSLLTNGDLSHSDLTGNENQKPTRKISNLTKQENGEDGIKNSPKLPSYMAATESAKAKLRAQGSPRFGQDGTEKNNTAGGSGRHSLPSSTNNQISSHSPKPQRSVPAGGKGGNKSDRTVPSSKAGNGKVTQAEWRR*

>Glyma.04g173100.2.p sequence-type=predicted peptide transcript=Glyma.04g173100.2 locus=Glyma.04g173100 ID=Glyma.04g173100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGKSPGKWIKTVLFGKKSSKSNISKGREKFVNKKEAVVSSNELENGLSLDPTPDEIATNEEDHELENEESENILPDNQERDIIGSVDPDAPPDPEKIRLEQAASKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRKQAVVTLCCMYGIVKLQALVRGGRIRQSNDFHEKCNLFKPLDAKLGEPVGISTKISKLTANTFIHKLLASSITIMALQLQYVNGDPNSVLSWLERWSASYFWKPVPQPKKIRDSKSQRKQGNVSNGEAQITKSKRTTRKLPIANFETALEQTNPEFEKPKRNFRKTPYQVSDPEQENPQSELEKVKRSLRKIHNPVVENAGQPEVESETPKQHLEMTKVIPGHAVLEQATITSDDKIKMEETSTISNVPDVEITPIPSVNKEVSEILNNYQVSVESKPLSETPTKDRNTSHDEVKNKLGNLPETIFKDENSLLTNGDLSHSDLTGNENQKPTRKISNLTKQENGEDGIKNSPKLPSYMAATESAKAKLRAQGSPRFGQDGTEKNNTAGGSGRHSLPSSTNNQISSHSPKPQRSVPAGGKGGNKSDRTVPSSKAGNGKVTQAEWRR*






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