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Report for Sequence Feature Glyma.04g171700

Feature Type:gene_model
Chromosome:Gm04
Start:42862750
stop:42865480
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g171700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G07830.1AT ribosomal protein L29 family protein JGI N/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0006412GO-bp translation JGI N/AIEA
GO:0032543GO-bp mitochondrial translation EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0005761GO-cc mitochondrial ribosome EnsemblGenomesN/AIEA
GO:0005761GO-cc mitochondrial ribosome JGI N/AIEA
GO:0005762GO-cc mitochondrial large ribosomal subunit EnsemblGenomesN/AIEA
GO:0005840GO-cc ribosome EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome JGI N/AIEA
KOG3331 KOG Mitochondrial/chloroplast ribosomal protein L4/L29 JGI N/AIEA
PTHR21183Panther RIBOSOMAL PROTEIN L47, MITOCHONDRIAL-RELATED JGI N/AIEA
PTHR21183:SF11Panther JGI N/AIEA
PF06984PFAM Mitochondrial 39-S ribosomal protein L47 (MRP-L47) JGI N/AIEA

Expression Patterns of Glyma.04g171700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g171700 not represented in the dataset
Glyma.04g171700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g171700
ParalogEvidenceComments
Glyma.06g192200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g171700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g33930 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g171700
>Glyma.04g171700.1 sequence-type=CDS polypeptide=Glyma.04g171700.1.p locus=Glyma.04g171700 ID=Glyma.04g171700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTTTTGTCAAGAACACTTGGACGAACACTATTTGCTGCAGCTGCCAGATCAAAACAATATGCCACTACAGCAGCTGCTGCTGCTGGCAGAGAAGGACACAACCCCCTTCAGGAGTTCTTTGAGGCAGACAGGAGCCCTGATGATGACAAACCTGTTGTTTATGGTCGGAGTTGGAAGGCGTCTGAACTGCGTCTGAAGTCTTGGGACGACCTTCATAAGTTGTGGTATGTGTTGTTAAAGGAAAAGAACATGTTGATGACTCAACGTCAAATGCTTAATGCACAGAACCTGCGTTTTCCTAACCCGGAGCGCATCCCTAAGGTGAGGAAGTCAATGTGTCGCATCAAGCATGTACTTACTGAGAGAGCAATTGAAGAACCAGATCCCAGGAGGTCTGCTGAGATGAAAAGAATGATAAATGCTCTTTGA
Predicted protein sequences of Glyma.04g171700
>Glyma.04g171700.1.p sequence-type=predicted peptide transcript=Glyma.04g171700.1 locus=Glyma.04g171700 ID=Glyma.04g171700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFLSRTLGRTLFAAAARSKQYATTAAAAAGREGHNPLQEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLHKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKHVLTERAIEEPDPRRSAEMKRMINAL*






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