Glyma.04g171400

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Report for Sequence Feature Glyma.04g171400

Feature Type:	gene_model
Chromosome:	Gm04
Start:	42832426
stop:	42834580
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.04g171400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G39850.1	AT	Ribosomal protein S4	JGI	N/A	IEA
GO:0006412	GO-bp	translation	EnsemblGenomes	N/A	IEA
GO:0045903	GO-bp	positive regulation of translational fidelity	EnsemblGenomes	N/A	IEA
GO:0005622	GO-cc	intracellular	EnsemblGenomes	N/A	IEA
GO:0005622	GO-cc	intracellular	JGI	N/A	IEA
GO:0005840	GO-cc	ribosome	EnsemblGenomes	N/A	IEA
GO:0015935	GO-cc	small ribosomal subunit	EnsemblGenomes	N/A	IEA
GO:0022627	GO-cc	cytosolic small ribosomal subunit	EnsemblGenomes	N/A	IEA
GO:0003723	GO-mf	RNA binding	EnsemblGenomes	N/A	IEA
GO:0003723	GO-mf	RNA binding	JGI	N/A	IEA
GO:0003735	GO-mf	structural constituent of ribosome	EnsemblGenomes	N/A	IEA
GO:0019843	GO-mf	rRNA binding	EnsemblGenomes	N/A	IEA
GO:0019843	GO-mf	rRNA binding	JGI	N/A	IEA
KOG3301	KOG	Ribosomal protein S4	JGI	N/A	IEA
PTHR11831	Panther	30S 40S RIBOSOMAL PROTEIN	JGI	N/A	IEA
PTHR11831:SF3	Panther		JGI	N/A	IEA
PF00163	PFAM	Ribosomal protein S4/S9 N-terminal domain	JGI	N/A	IEA
PF01479	PFAM	S4 domain	JGI	N/A	IEA

Expression Patterns of Glyma.04g171400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g171400 not represented in the dataset	Glyma.04g171400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.04g171400

Paralog	Evidence	Comments
Glyma.06g192500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g171400 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma04g33900	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.04g171400

Limit To All Plant Sequences

>Glyma.04g171400.2 sequence-type=transcript locus=Glyma.04g171400 ID=Glyma.04g171400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAGCTCGGGGTTGGGCCCGGACCCGTCCCTGAAGCTCAACTACACACACATGGCAGACACTAAGAACTAGGGTTTTCATTTAAAAAGGGCAAAACAAAAGGATGCAAAAAAGATCCAGTTGTCGGAGGCGCAGAGTAGAGCAGCAGAGAAGAGAGAAAACGGCACTGCAGCCGTAGAAGGAAAACCGACCATGGTGCACGTCTCCTTTTACAGGAACTATGGTAAGACGTTTAAGAAGCCCCGCCGTCCGTACGAGAAGGAGCGTCTAGACGCGGAGCTGAAGCTGGTGGGGGAGTACGGGCTGCGGTGCAAGAGGGAGCTGTGGAGGGTGCAGTACGCGCTCAGCCGCATCCGCAACAACGCGCGGAATCTCCTTACCCTCGACGAGAAGAACCCGCGCCGGATCTTCGAGGGCGAGGCTCTTCTCCGCAGAATGTTCCGCTACGGACTCCTCGACGAGACTCAGAACAAGCTCGATTACGTCCTCGCCCTCACCGTCGAGAATTTCCTCGAGCGCCGCCTTCAGACGCTCGTCTTCAAATCCGGGATGGCCAAGTCCATTCACCACGCCAGGGTTCTCATCAAGCAGAGACATATCAGGGTTGACTCACAGAAGCACATTGACTTCTCACTTACAAGTCCCCTTGGTGGCGGACGCCCTGGAAGAGTGAAGAGAAGAAACCAAAGGGCTGCTGCTAAGAAGGCCGCAGGTGGAGACGGAGACGAGGAAGACGAGGATTAGACTGTTCATTATGTCTTTCTCTAGTGCTATTAGATCTTATGCCACCTTTTACTTTGCCTACCTAATCGATTTTGGTTGTTATACATTTTCATCCTTTGGTTCCCTTGTTTGAGAAAATATTAAGTGGTGACATATTATGTTTTTGTGAATTTGGATATTTTAAAGTATCAAGATTTTCCATTAAATAATTTTTGATGATCATTGATTGGTTTCCTCTGTC

Coding sequences of Glyma.04g171400

Limit To All Plant Sequences

>Glyma.04g171400.1 sequence-type=CDS polypeptide=Glyma.04g171400.1.p locus=Glyma.04g171400 ID=Glyma.04g171400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGCACGTCTCCTTTTACAGGAACTATGGTAAGACGTTTAAGAAGCCCCGCCGTCCGTACGAGAAGGAGCGTCTAGACGCGGAGCTGAAGCTGGTGGGGGAGTACGGGCTGCGGTGCAAGAGGGAGCTGTGGAGGGTGCAGTACGCGCTCAGCCGCATCCGCAACAACGCGCGGAATCTCCTTACCCTCGACGAGAAGAACCCGCGCCGGATCTTCGAGGGCGAGGCTCTTCTCCGCAGAATGTTCCGCTACGGACTCCTCGACGAGACTCAGAACAAGCTCGATTACGTCCTCGCCCTCACCGTCGAGAATTTCCTCGAGCGCCGCCTTCAGACGCTCGTCTTCAAATCCGGGATGGCCAAGTCCATTCACCACGCCAGGGTTCTCATCAAGCAGAGACATATCAGGGTTGGGAGGCAAGTGGTGAACATCCCATCTTTCTTGGTGAGGGTTGACTCACAGAAGCACATTGACTTCTCACTTACAAGTCCCCTTGGTGGCGGACGCCCTGGAAGAGTGAAGAGAAGAAACCAAAGGGCTGCTGCTAAGAAGGCCGCAGGTGGAGACGGAGACGAGGAAGACGAGGATTAG

>Glyma.04g171400.2 sequence-type=CDS polypeptide=Glyma.04g171400.2.p locus=Glyma.04g171400 ID=Glyma.04g171400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGCACGTCTCCTTTTACAGGAACTATGGTAAGACGTTTAAGAAGCCCCGCCGTCCGTACGAGAAGGAGCGTCTAGACGCGGAGCTGAAGCTGGTGGGGGAGTACGGGCTGCGGTGCAAGAGGGAGCTGTGGAGGGTGCAGTACGCGCTCAGCCGCATCCGCAACAACGCGCGGAATCTCCTTACCCTCGACGAGAAGAACCCGCGCCGGATCTTCGAGGGCGAGGCTCTTCTCCGCAGAATGTTCCGCTACGGACTCCTCGACGAGACTCAGAACAAGCTCGATTACGTCCTCGCCCTCACCGTCGAGAATTTCCTCGAGCGCCGCCTTCAGACGCTCGTCTTCAAATCCGGGATGGCCAAGTCCATTCACCACGCCAGGGTTCTCATCAAGCAGAGACATATCAGGGTTGACTCACAGAAGCACATTGACTTCTCACTTACAAGTCCCCTTGGTGGCGGACGCCCTGGAAGAGTGAAGAGAAGAAACCAAAGGGCTGCTGCTAAGAAGGCCGCAGGTGGAGACGGAGACGAGGAAGACGAGGATTAG

Predicted protein sequences of Glyma.04g171400

Limit To All Plant Sequences

>Glyma.04g171400.1.p sequence-type=predicted peptide transcript=Glyma.04g171400.1 locus=Glyma.04g171400 ID=Glyma.04g171400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARNLLTLDEKNPRRIFEGEALLRRMFRYGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIKQRHIRVGRQVVNIPSFLVRVDSQKHIDFSLTSPLGGGRPGRVKRRNQRAAAKKAAGGDGDEEDED*

>Glyma.04g171400.2.p sequence-type=predicted peptide transcript=Glyma.04g171400.2 locus=Glyma.04g171400 ID=Glyma.04g171400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARNLLTLDEKNPRRIFEGEALLRRMFRYGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIKQRHIRVDSQKHIDFSLTSPLGGGRPGRVKRRNQRAAAKKAAGGDGDEEDED*

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