Glyma.04g162700

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Report for Sequence Feature Glyma.04g162700

Feature Type:	gene_model
Chromosome:	Gm04
Start:	40326865
stop:	40331483
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.04g162700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G18640.2	AT	3-phosphoserine phosphatase	JGI	N/A	IEA
GO:0006564	GO-bp	L-serine biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0016311	GO-bp	dephosphorylation	EnsemblGenomes	N/A	IEA
GO:0004647	GO-mf	phosphoserine phosphatase activity	EnsemblGenomes	N/A	IEA
KOG1615	KOG	Phosphoserine phosphatase	JGI	N/A	IEA
PTHR10000	Panther	PHOSPHOSERINE PHOSPHATASE	JGI	N/A	IEA
PF00702	PFAM	haloacid dehalogenase-like hydrolase	JGI	N/A	IEA
SERSYN-PWY	SoyCyc9	L-serine biosynthesis	Plant Metabolic Network		ISS
GN7V-64505	SoyCyc9-rxn	phosphoserine phosphatase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.04g162700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g162700 not represented in the dataset	Glyma.04g162700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.04g162700

Paralog	Evidence	Comments
Glyma.06g203300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g162700 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma04g32450	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.04g162700

Limit To All Plant Sequences

>Glyma.04g162700.2 sequence-type=transcript locus=Glyma.04g162700 ID=Glyma.04g162700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAACATTGCTCCAAGAAAAAAAAAATTATTCCATTTCATAGACGTTGAGCCTTTAACCCCACTAACTAACCCTCTCAGATTTCCTCACGCGCCTGCAAACGCTTTTCCTTCACTTCTAACATCTGCAGATACTCAATAAGATTCATACACGTTCAGTCTCGCATCACACCCTTTTGATCCTAAAATCTAGCACCCTTGATCCTCTAATGGGATTTTGATAAATCAACGTTTTTTTGTCCCTGGATTTGGAAAACAGCTTGTTCCATGGAAGGTTTGGTGAGTTCTGGGATCAACACAGTTCGTGTTTTTAGCATTACAAACCACCAATCTCGTTTTCTTCCTTCATCAACTCTGCATCTCAGGAATAATAGTTTGTGTGGATTTGGAATTGGAGTTGAGAAGAAGAATAAACAGTGTTCCGTTGTGGCTGCTTCTGTTGGGGGCTCCAAAGTGGGCCATTTTGAGAACACACTCCCTTCCAAAGAGGTTCTTGAGCTTTGGAGAAATGGTGATGCTGTGTGCTTTGATGTGGATAGCACTGTGTGCTTGGATGAAGGGATTGATGAACTTGCTGAATTCTGTGGGGCTGGAAAGGCAGTGGCTGAATGGACTGCTAGAGCAATGGGTGGTTCTGTTCCGTTTGAGGAAGCCTTGGCTGCTAGGCTGTCTTTGTTCAATCCCTCTTTGTCCCAGCTTCAGAATTTTCTTGAACAAAAGCCACCAAGGCTTTCCCCTGGCATTGAAGAGTTAGTCCAGAAGTTGAAGGCTAATGGCATAGTTGTTTATCTGATCTCTGGTGGCTTCCGTCAAATGATCAATGATGATGGATTAAGTACTTTAGTTTTCTAACTACTTGGACGCTTCTTACTTAGCCTGTTGCATCAATACTTGGGATTCCACAAGAGAATATTTTTGCCAATCAACTACTTTTTGGAAGCTCTGGAGAGTTTCTGGGGTTCGATAAAAATGAGCCTACTTCAAGGAGTGGAGGAAAAGCTGTTGCTGTCCAACAAATCAAGAAGGCTAATGGTTTCAAAACTTTAACTATGGTGGGGGATGGTGCAACTGATTTTGAGGCTCGTAAACCAGGTGGTGCTGACATGTTCGTTTGCTATGCGGGTGTTCAACTTCGAGAATCTGTTGCTGCAAAAGCTGATTGGCTAGTTTTCAATTTTAAAGACCTCATAAATTCGTTAGGGTAACTTTTTATTTTTCTTTTTTCATTTGTTTCCTTCTGAGCCGGCATGGGGAGTTTCCTATATTCTAAGAGGATGGGAATGCAGTCACCATCTCACTGTTTTAAATTTTTTTAGACTTATGTTTTATTGATTTTTTTAATGTATAAAAAAATATTTAGCGGGGGATTCTCTACACTTGAAAAAGTGTATAGAAACCTTTCGGATGATAGAAGAGTGAGAAATCGAATAAATGTACATTTGATGGCTTTTCTTACTAATTGCCATTAAATTTTATTCTTGGTGAA

>Glyma.04g162700.3 sequence-type=transcript locus=Glyma.04g162700 ID=Glyma.04g162700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCAGATTTCCTCACGCGCCTGCAAACGCTTTTCCTTCACTTCTAACATCTGCAGATACTCAATAAGATTCATACACGTTCAGTCTCGCATCACACCCTTTTGATCCTAAAATCTAGCACCCTTGATCCTCTAATGGGATTTTGATAAATCAACGTTTTTTTGTCCCTGGATTTGGAAAACAGCTTGTTCCATGGAAGGTTTGGTGAGTTCTGGGATCAACACAGTTCGTGTTTTTAGCATTACAAACCACCAATCTCGTTTTCTTCCTTCATCAACTCTGCATCTCAGGAATAATAGTTTGTGTGGATTTGGAATTGGAGTTGAGAAGAAGAATAAACAGTGTTCCGTTGTGGCTGCTTCTGTTGGGGGCTCCAAAGTGGGCCATTTTGAGAACACACTCCCTTCCAAAGAGGTTCTTGAGCTTTGGAGAAATGGTGATGCTGTGTGCTTTGATGTGGATAGCACTGTGTGCTTGGATGAAGGGATTGATGAACTTGCTGAATTCTGTGGGGCTGGAAAGGCAGTGGCTGAATGGACTGCTAGAGCAATGGGTGGTTCTGTTCCGTTTGAGGAAGCCTTGGCTGCTAGGCTGTCTTTGTTCAATCCCTCTTTGTCCCAGCTTCAGAATTTTCTTGAACAAAAGCCACCAAGGCTTTCCCCTGGCATTGAAGAGTTAGTCCAGAAGTTGAAGGCTAATGGCATAGTTGTTTATCTGATCTCTGGTGGCTTCCGTCAAATGATCAATTTCTTTTGACATTTGATATGTTCTATGTATAAAGGATGATGGATTAAGTACTTTAGTTTTCTAACTACTTGGACGCTTCTTACTTAGCCTGTTGCATCAATACTTGGGATTCCACAAGAGAATATTTTTGCCAATCAACTACTTTTTGGAAGCTCTGGAGAGTTTCTGGGGTTCGATAAAAATGAGCCTACTTCAAGGAGTGGAGGAAAAGCTGTTGCTGTCCAACAAATCAAGAAGGCTAATGGTTTCAAAACTTTAACTATGGTGGGGGATGGTGCAACTGATTTTGAGGCTCGTAAACCAGGTGGTGCTGACATGTTCGTTTGCTATGCGGGTGTTCAACTTCGAGAATCTGTTGCTGCAAAAGCTGATTGGCTAGTTTTCAATTTTAAAGACCTCATAAATTCGTTAGGGTAACTTTTTATTTTTCTTTTTTCATTTGTTTCCTTCTGAGCCGGCATGGGGAGTTTCCTATATTCTAAGAGGATGGGAATGCAGTCACCATCTCACTGTTTTAAATTTTTTTAGACTTATGTTTTATTGATTTTTTTAATGTATAAAAAAATATTTAGCGGGGGATTCTCTACACTTGAAAAAGTGTATAGAAACCTTTCGGATGATAGAAGAGTGAGAAATCGAATAAATGTACATTTGATGGCTTTTCTTACTAATTGCCATTAAATTTTATTCTTGGTGAA

>Glyma.04g162700.4 sequence-type=transcript locus=Glyma.04g162700 ID=Glyma.04g162700.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
CACGCGCCTGCAAACGCTTTTCCTTCACTTCTAACATCTGCAGATACTCAATAAGATTCATACACGTTCAGTCTCGCATCACACCCTTTTGATCCTAAAATCTAGCACCCTTGATCCTCTAATGGGATTTTGATAAATCAACGTTTTTTTGTCCCTGGATTTGGAAAACAGCTTGTTCCATGGAAGGTTTGGTGAGTTCTGGGATCAACACAGTTCGTGTTTTTAGCATTACAAACCACCAATCTCGTTTTCTTCCTTCATCAACTCTGCATCTCAGGAATAATAGTTTGTGTGGATTTGGAATTGGAGTTGAGAAGAAGAATAAACAGTGTTCCGTTGTGGCTGCTTCTGTTGGGGGCTCCAAAGTGGGCCATTTTGAGAACACACTCCCTTCCAAAGAGGTTCTTGAGCTTTGGAGAAATGGTGATGCTGTGTGCTTTGATGTGGATAGCACTGTGTGCTTGGATGAAGGGATTGATGAACTTGCTGAATTCTGTGGGGCTGGAAAGGCAGTGGCTGAATGGACTGCTAGAGCAATGGGTGGTTCTGTTCCGTTTGAGGAAGCCTTGGCTGCTAGGCTGTCTTTGTTCAATCCCTCTTTGTCCCAGCTTCAGAATTTTCTTGAACAAAAGCCACCAAGGCTTTCCCCTGGCATTGAAGAGTTAGTCCAGAAGTTGAAGGCTAATGGCATAGTTGTTTATCTGATCTCTGGTGGCTTCCGTCAAATGATCAATGTACAGAGAATATTGGTAATTAATGGTTTTTCTGATTCATTTTGGGCTCGGGAGGAAATCAATAGTTACTGACATATTGTGAATTTGGATAGACTTTTTAATCTGTATTGCACACTGCCATTGAAAATATTTCAGAACTAGT

Coding sequences of Glyma.04g162700

Limit To All Plant Sequences

>Glyma.04g162700.1 sequence-type=CDS polypeptide=Glyma.04g162700.1.p locus=Glyma.04g162700 ID=Glyma.04g162700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGGTTTGGTGAGTTCTGGGATCAACACAGTTCGTGTTTTTAGCATTACAAACCACCAATCTCGTTTTCTTCCTTCATCAACTCTGCATCTCAGGAATAATAGTTTGTGTGGATTTGGAATTGGAGTTGAGAAGAAGAATAAACAGTGTTCCGTTGTGGCTGCTTCTGTTGGGGGCTCCAAAGTGGGCCATTTTGAGAACACACTCCCTTCCAAAGAGGTTCTTGAGCTTTGGAGAAATGGTGATGCTGTGTGCTTTGATGTGGATAGCACTGTGTGCTTGGATGAAGGGATTGATGAACTTGCTGAATTCTGTGGGGCTGGAAAGGCAGTGGCTGAATGGACTGCTAGAGCAATGGGTGGTTCTGTTCCGTTTGAGGAAGCCTTGGCTGCTAGGCTGTCTTTGTTCAATCCCTCTTTGTCCCAGCTTCAGAATTTTCTTGAACAAAAGCCACCAAGGCTTTCCCCTGGCATTGAAGAGTTAGTCCAGAAGTTGAAGGCTAATGGCATAGTTGTTTATCTGATCTCTGGTGGCTTCCGTCAAATGATCAATCCTGTTGCATCAATACTTGGGATTCCACAAGAGAATATTTTTGCCAATCAACTACTTTTTGGAAGCTCTGGAGAGTTTCTGGGGTTCGATAAAAATGAGCCTACTTCAAGGAGTGGAGGAAAAGCTGTTGCTGTCCAACAAATCAAGAAGGCTAATGGTTTCAAAACTTTAACTATGGTGGGGGATGGTGCAACTGATTTTGAGGCTCGTAAACCAGGTGGTGCTGACATGTTCGTTTGCTATGCGGGTGTTCAACTTCGAGAATCTGTTGCTGCAAAAGCTGATTGGCTAGTTTTCAATTTTAAAGACCTCATAAATTCGTTAGGGTAA

>Glyma.04g162700.2 sequence-type=CDS polypeptide=Glyma.04g162700.2.p locus=Glyma.04g162700 ID=Glyma.04g162700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGGTTTGGTGAGTTCTGGGATCAACACAGTTCGTGTTTTTAGCATTACAAACCACCAATCTCGTTTTCTTCCTTCATCAACTCTGCATCTCAGGAATAATAGTTTGTGTGGATTTGGAATTGGAGTTGAGAAGAAGAATAAACAGTGTTCCGTTGTGGCTGCTTCTGTTGGGGGCTCCAAAGTGGGCCATTTTGAGAACACACTCCCTTCCAAAGAGGTTCTTGAGCTTTGGAGAAATGGTGATGCTGTGTGCTTTGATGTGGATAGCACTGTGTGCTTGGATGAAGGGATTGATGAACTTGCTGAATTCTGTGGGGCTGGAAAGGCAGTGGCTGAATGGACTGCTAGAGCAATGGGTGGTTCTGTTCCGTTTGAGGAAGCCTTGGCTGCTAGGCTGTCTTTGTTCAATCCCTCTTTGTCCCAGCTTCAGAATTTTCTTGAACAAAAGCCACCAAGGCTTTCCCCTGGCATTGAAGAGTTAGTCCAGAAGTTGAAGGCTAATGGCATAGTTGTTTATCTGATCTCTGGTGGCTTCCGTCAAATGATCAATGATGATGGATTAAGTACTTTAGTTTTCTAA

>Glyma.04g162700.3 sequence-type=CDS polypeptide=Glyma.04g162700.3.p locus=Glyma.04g162700 ID=Glyma.04g162700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGGTTTGGTGAGTTCTGGGATCAACACAGTTCGTGTTTTTAGCATTACAAACCACCAATCTCGTTTTCTTCCTTCATCAACTCTGCATCTCAGGAATAATAGTTTGTGTGGATTTGGAATTGGAGTTGAGAAGAAGAATAAACAGTGTTCCGTTGTGGCTGCTTCTGTTGGGGGCTCCAAAGTGGGCCATTTTGAGAACACACTCCCTTCCAAAGAGGTTCTTGAGCTTTGGAGAAATGGTGATGCTGTGTGCTTTGATGTGGATAGCACTGTGTGCTTGGATGAAGGGATTGATGAACTTGCTGAATTCTGTGGGGCTGGAAAGGCAGTGGCTGAATGGACTGCTAGAGCAATGGGTGGTTCTGTTCCGTTTGAGGAAGCCTTGGCTGCTAGGCTGTCTTTGTTCAATCCCTCTTTGTCCCAGCTTCAGAATTTTCTTGAACAAAAGCCACCAAGGCTTTCCCCTGGCATTGAAGAGTTAGTCCAGAAGTTGAAGGCTAATGGCATAGTTGTTTATCTGATCTCTGGTGGCTTCCGTCAAATGATCAATTTCTTTTGA

>Glyma.04g162700.4 sequence-type=CDS polypeptide=Glyma.04g162700.4.p locus=Glyma.04g162700 ID=Glyma.04g162700.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGGTTTGGTGAGTTCTGGGATCAACACAGTTCGTGTTTTTAGCATTACAAACCACCAATCTCGTTTTCTTCCTTCATCAACTCTGCATCTCAGGAATAATAGTTTGTGTGGATTTGGAATTGGAGTTGAGAAGAAGAATAAACAGTGTTCCGTTGTGGCTGCTTCTGTTGGGGGCTCCAAAGTGGGCCATTTTGAGAACACACTCCCTTCCAAAGAGGTTCTTGAGCTTTGGAGAAATGGTGATGCTGTGTGCTTTGATGTGGATAGCACTGTGTGCTTGGATGAAGGGATTGATGAACTTGCTGAATTCTGTGGGGCTGGAAAGGCAGTGGCTGAATGGACTGCTAGAGCAATGGGTGGTTCTGTTCCGTTTGAGGAAGCCTTGGCTGCTAGGCTGTCTTTGTTCAATCCCTCTTTGTCCCAGCTTCAGAATTTTCTTGAACAAAAGCCACCAAGGCTTTCCCCTGGCATTGAAGAGTTAGTCCAGAAGTTGAAGGCTAATGGCATAGTTGTTTATCTGATCTCTGGTGGCTTCCGTCAAATGATCAATGTACAGAGAATATTGGTAATTAATGGTTTTTCTGATTCATTTTGGGCTCGGGAGGAAATCAATAGTTACTGA

Predicted protein sequences of Glyma.04g162700

Limit To All Plant Sequences

>Glyma.04g162700.1.p sequence-type=predicted peptide transcript=Glyma.04g162700.1 locus=Glyma.04g162700 ID=Glyma.04g162700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEGLVSSGINTVRVFSITNHQSRFLPSSTLHLRNNSLCGFGIGVEKKNKQCSVVAASVGGSKVGHFENTLPSKEVLELWRNGDAVCFDVDSTVCLDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFNPSLSQLQNFLEQKPPRLSPGIEELVQKLKANGIVVYLISGGFRQMINPVASILGIPQENIFANQLLFGSSGEFLGFDKNEPTSRSGGKAVAVQQIKKANGFKTLTMVGDGATDFEARKPGGADMFVCYAGVQLRESVAAKADWLVFNFKDLINSLG*

>Glyma.04g162700.2.p sequence-type=predicted peptide transcript=Glyma.04g162700.2 locus=Glyma.04g162700 ID=Glyma.04g162700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEGLVSSGINTVRVFSITNHQSRFLPSSTLHLRNNSLCGFGIGVEKKNKQCSVVAASVGGSKVGHFENTLPSKEVLELWRNGDAVCFDVDSTVCLDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFNPSLSQLQNFLEQKPPRLSPGIEELVQKLKANGIVVYLISGGFRQMINDDGLSTLVF*

>Glyma.04g162700.3.p sequence-type=predicted peptide transcript=Glyma.04g162700.3 locus=Glyma.04g162700 ID=Glyma.04g162700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEGLVSSGINTVRVFSITNHQSRFLPSSTLHLRNNSLCGFGIGVEKKNKQCSVVAASVGGSKVGHFENTLPSKEVLELWRNGDAVCFDVDSTVCLDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFNPSLSQLQNFLEQKPPRLSPGIEELVQKLKANGIVVYLISGGFRQMINFF*

>Glyma.04g162700.4.p sequence-type=predicted peptide transcript=Glyma.04g162700.4 locus=Glyma.04g162700 ID=Glyma.04g162700.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEGLVSSGINTVRVFSITNHQSRFLPSSTLHLRNNSLCGFGIGVEKKNKQCSVVAASVGGSKVGHFENTLPSKEVLELWRNGDAVCFDVDSTVCLDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFNPSLSQLQNFLEQKPPRLSPGIEELVQKLKANGIVVYLISGGFRQMINVQRILVINGFSDSFWAREEINSY*

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