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Report for Sequence Feature Glyma.04g161300

Feature Type:gene_model
Chromosome:Gm04
Start:39978926
stop:39980814
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g161300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G08360.1AT Ribosomal protein L1p/L10e family JGI N/AIEA
AT2G27530.1AT Ribosomal protein L1p/L10e family JGI N/AIEA
GO:0000470GO-bp maturation of LSU-rRNA EnsemblGenomesN/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0006412GO-bp translation JGI N/AIEA
GO:0015934GO-cc large ribosomal subunit JGI N/AIEA
GO:0022625GO-cc cytosolic large ribosomal subunit EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding JGI N/AIEA
GO:0003735GO-mf structural constituent of ribosome JGI N/AIEA
PTHR23105Panther RIBOSOMAL PROTEIN L7AE FAMILY MEMBER JGI N/AIEA
PTHR23105:SF4Panther JGI N/AIEA
PF00687PFAM Ribosomal protein L1p/L10e family JGI N/AIEA

Expression Patterns of Glyma.04g161300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g161300 not represented in the dataset
Glyma.04g161300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.04g161300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g32312 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g161300
>Glyma.04g161300.2 sequence-type=transcript locus=Glyma.04g161300 ID=Glyma.04g161300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGCTAGGGTTTCAATGTGTTAGATCTGTACCCGCCTAGCAATTGATTTGGAAAAGTCCAAGCTTCAAAGATGAGGTATTCATTCTCTCATCTTCAACTTATCTTTGTTCAAATTTCTTAGTTTGTTCGTACGTTTTATTGTGAAAGCAATGTTGTTGATTGTTTTTCGTTGATAGCTGATGTGTACTTTGCGTGGTCTTACTGTGTATGATGTTAATGAAAATTGTTCGGTGAAAATTGTGCATTTGGAAAATCTATGTTTTGTGTTTTCTGATCTGTATTGGGTGTTGGTTGTTATAGTAAGCTTTAGAGTGATGCTTTTAGAGAAGCTATCTCAGGAATCATGACTGATTCCAAGGAAAAGAACAGGAAATTTGTGGAGACCATTGAACTCCAAATTAGGCTGAAAAACTATGATCCTCAGAAGGACAAGCGTTTTAGTGGCTCTGTTAAGTTGCGTCACATTCCTTGCCCCAAGATGAAGATTTGTATGCTTGGAGATGCCCAACATGTTGAAGAGGCTGAGAAGGTAGGATTGGACTACATGGATGTTGAGGCCTTGAAGAAGCTTAACAAAAACAAGAAATTGGTGAAAAAACTAGCCAAAAAATATCTTGTTACTCAACTTCTTCAACAAGTGATTATTAGTGTCAAACAATATCATGTACGAAATTAAAAGTGTACTATAGGGACTAAGTAATTATACCTTACTAATTTATCACCGGTTAAAAACAAGTCATTGTCTCTTATTGTGGGATTTTGTGACTTATTTTATTTTCATTTTCCTTTGTGAATAGTTATTCTCTTGGTATGGGCAATGTTCCATAATTATGGCTACAATCTGTTGGCATCTCCTACTATCCAAGCATATTAGACGCCAGTTATGTTCCTGTTGTTATTGAAGCTTTGGCAACTATTAGAAGCAACTGTTTGTGTGCAGAAAACAATAAATTTTCATTGATAAAATGAAATTCTGGAGTGTTAATTTTAAGGTGCATGAAACAAGTTTAGCGAGCTTTTAATTAGCTAGCTACTTAGTGACGTAGGGCTTTTGGGTGGGATGGAGTGTAGTAAGCCCAACTTCTCCCTTCAGAGTCCTTAATAACGAAAATATATGGAAGAAAGATCTTAAATCAATTGTGTATGTGAAAATATATGGAAGAAAAATAATGTCTCTTACACCCAGAATGATGGTTGTCTTGTGCCCATGGCCACCCTTCACCGACTTAAGCTGCTTGAGTTGGGATAACTCTATGTACACTCAAGCTTCACACATGGATTCATATTAATGTTAGATATTATGTTGTGATATCCTTTGCCAAGATTAAGAAGCTCGTCTTTGTAATGTGGCATTGGCATTGTATATTTGAATCAAACATCCCATATTCTATTATTACCTTTGTTCTATTGAT

>Glyma.04g161300.3 sequence-type=transcript locus=Glyma.04g161300 ID=Glyma.04g161300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGCTAGGGTTTCAATGGTACTTTCTCTAATCCGAAGATATTGCTATTTGATTTTCCTACATTTTATTCTGCTTACTTCATTGATTCCAATTCTTACTTTCTTCTTCTCTGCGATTTTGTTTGCAAGTGTTAGATCTGTACCCGCCTAGCAATTGATTTGGAAAAGTCCAAGCTTCAAAGATGAGGTATTCATTCTCTCATCTTCAACTTATCTTTGTTCAAATTTCTTAGTTTGTTCGTACGTTTTATTGTGAAAGCAATGTTGTTGATTGTTTTTCGTTGATAGCTGATGTGTACTTTGCGTGGTCTTACTGTGTATGATGTTAATGAAAATTGTTCGGTGAAAATTGTGCATTTGGAAAATCTATGTTTTGTGTTTTCTGATCTGTATTGGGTGTTGGTTGTTATAGTAAGCTTTAGAGTGATGCTTTTAGAGAAGCTATCTCAGGAATCATGACTGATTCCAAGGAAAAGAACAGGAAATTTGTGGAGACCATTGAACTCCAAATTAGGCTGAAAAACTATGATCCTCAGAAGGACAAGCGTTTTAGTGGCTCTGTTAAGTTGCGTCACATTCCTTGCCCCAAGATGAAGATTTGTATGCTTGGAGATGCCCAACATGTTGAAGAGGCTGAGAAGGTAGGATTGGACTACATGGATGTTGAGGCCTTGAAGAAGCTTAACAAAAACAAGAAATTGGTGAAAAAACTAGCCAAAAAATATCTTGTTACTCAACTTCTTCAACAAGTGATTATTAGTGTCAAACAATATCATGTACGAAATTAAAAGTGTACTATAGGGACTAAGTAATTATACCTTACTAATTTATCACCGGTTAAAAACAAGTCATTGTCTCTTATTGTGGGATTTTGTGACTTATTTTATTTTCATTTTCCTTTGTGAATAGTTATTCTCTTGGTATGGGCAATGTTCCATAATTATGGCTACAATCTGTTGGCATCTCCTACTATCCAAGCATATTAGACGCCAGTTATGTTCCTGTTGTTATTGAAGCTTTGGCAACTATTAGAAGCAACTGTTTGTGTGCAGAAAACAATAAATTTTCATTGATAAAATGAAATTCTGGAGTGTTAATTTTAAGGTGCATGAAACAAGTTTAGCGAGCTTTTAATTAGCTAGCTACTTAGTGACGTAGGGCTTTTGGGTGGGATGGAGTGTAGTAAGCCCAACTTCTCCCTTCAGAGTCCTTAATAACGAAAATATATGGAAGAAAGATCTTAAATCAATTGTGTATGTGAAAATATATGGAAGAAAAATAATGTCTCTTACACCCAGAATGATGGTTGTCTTGTGCCCATGGCCACCCTTCACCGACTTAAGCTGCTTGAGTTGGGATAACTCTATGTACACTCAAGCTTCACACATGGATTCATATTAATGTTAGATATTATGTTGTGATATCCTTTGCCAAGATTAAGAAGCTCGTCTTTGTAATGTGGCATTGGCATTGTATATTTGAATCAAACATCCCATATTCTATTATTACCTTTGTTCTATTGAT
Coding sequences of Glyma.04g161300
>Glyma.04g161300.1 sequence-type=CDS polypeptide=Glyma.04g161300.1.p locus=Glyma.04g161300 ID=Glyma.04g161300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGAGAAGCTATCTCAGGAATCATGACTGATTCCAAGGAAAAGAACAGGAAATTTGTGGAGACCATTGAACTCCAAATTAGGCTGAAAAACTATGATCCTCAGAAGGACAAGCGTTTTAGTGGCTCTGTTAAGTTGCGTCACATTCCTTGCCCCAAGATGAAGATTTGTATGCTTGGAGATGCCCAACATGTTGAAGAGGCTGAGAAGGTAGGATTGGACTACATGGATGTTGAGGCCTTGAAGAAGCTTAACAAAAACAAGAAATTGGTGAAAAAACTAGCCAAAAAATATCTTGTTACTCAACTTCTTCAACAAGTGATTATTAGTGTCAAACAATATCATGTACGAAATTAA

>Glyma.04g161300.2 sequence-type=CDS polypeptide=Glyma.04g161300.2.p locus=Glyma.04g161300 ID=Glyma.04g161300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACTGATTCCAAGGAAAAGAACAGGAAATTTGTGGAGACCATTGAACTCCAAATTAGGCTGAAAAACTATGATCCTCAGAAGGACAAGCGTTTTAGTGGCTCTGTTAAGTTGCGTCACATTCCTTGCCCCAAGATGAAGATTTGTATGCTTGGAGATGCCCAACATGTTGAAGAGGCTGAGAAGGTAGGATTGGACTACATGGATGTTGAGGCCTTGAAGAAGCTTAACAAAAACAAGAAATTGGTGAAAAAACTAGCCAAAAAATATCTTGTTACTCAACTTCTTCAACAAGTGATTATTAGTGTCAAACAATATCATGTACGAAATTAA

>Glyma.04g161300.3 sequence-type=CDS polypeptide=Glyma.04g161300.3.p locus=Glyma.04g161300 ID=Glyma.04g161300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACTGATTCCAAGGAAAAGAACAGGAAATTTGTGGAGACCATTGAACTCCAAATTAGGCTGAAAAACTATGATCCTCAGAAGGACAAGCGTTTTAGTGGCTCTGTTAAGTTGCGTCACATTCCTTGCCCCAAGATGAAGATTTGTATGCTTGGAGATGCCCAACATGTTGAAGAGGCTGAGAAGGTAGGATTGGACTACATGGATGTTGAGGCCTTGAAGAAGCTTAACAAAAACAAGAAATTGGTGAAAAAACTAGCCAAAAAATATCTTGTTACTCAACTTCTTCAACAAGTGATTATTAGTGTCAAACAATATCATGTACGAAATTAA
Predicted protein sequences of Glyma.04g161300
>Glyma.04g161300.1.p sequence-type=predicted peptide transcript=Glyma.04g161300.1 locus=Glyma.04g161300 ID=Glyma.04g161300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MREAISGIMTDSKEKNRKFVETIELQIRLKNYDPQKDKRFSGSVKLRHIPCPKMKICMLGDAQHVEEAEKVGLDYMDVEALKKLNKNKKLVKKLAKKYLVTQLLQQVIISVKQYHVRN*

>Glyma.04g161300.2.p sequence-type=predicted peptide transcript=Glyma.04g161300.2 locus=Glyma.04g161300 ID=Glyma.04g161300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTDSKEKNRKFVETIELQIRLKNYDPQKDKRFSGSVKLRHIPCPKMKICMLGDAQHVEEAEKVGLDYMDVEALKKLNKNKKLVKKLAKKYLVTQLLQQVIISVKQYHVRN*

>Glyma.04g161300.3.p sequence-type=predicted peptide transcript=Glyma.04g161300.3 locus=Glyma.04g161300 ID=Glyma.04g161300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTDSKEKNRKFVETIELQIRLKNYDPQKDKRFSGSVKLRHIPCPKMKICMLGDAQHVEEAEKVGLDYMDVEALKKLNKNKKLVKKLAKKYLVTQLLQQVIISVKQYHVRN*






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