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Report for Sequence Feature Glyma.04g160000

Feature Type:gene_model
Chromosome:Gm04
Start:39655881
stop:39658301
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g160000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G15630.1AT COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family JGI N/AIEA
GO:0010215GO-bp cellulose microfibril organization EnsemblGenomesN/AIEA
GO:0010215GO-bp cellulose microfibril organization JGI N/AIEA
GO:0016049GO-bp cell growth EnsemblGenomesN/AIEA
GO:0016049GO-bp cell growth JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0031225GO-cc anchored component of membrane EnsemblGenomesN/AIEA
GO:0031225GO-cc anchored component of membrane JGI N/AIEA
PF04833PFAM COBRA-like protein JGI N/AIEA

Proteins Associated with Glyma.04g160000
LocusGene SymbolProtein Name
COBL4 Regulates cell wall expansion and cellulose depostion

Expression Patterns of Glyma.04g160000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g160000
ParalogEvidenceComments
Glyma.06g205500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g160000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g32120 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g160000
>Glyma.04g160000.1 sequence-type=CDS polypeptide=Glyma.04g160000.1.p locus=Glyma.04g160000 ID=Glyma.04g160000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAATTTGTTAACGGTAAACAGCAGCCAAAGAGCACATTTACATGCTTGAAGTTGGTTGCCTTAATTGCTCTATACCTCGTCTTAATTTCTCCAGCAGAATCATTTGATCCGTTGGATCCAACCGGGAACGTGACAATAAGATGGGATATAATGTCCTGGACATCAGATGGTTATTTGGCCACTGTGACATTGTTTAACTTCCAACTATACCGCAATATTATGAATCCTGGGTGGACACTAGGGTGGACATGGGCAAAGAAGGAAATAATCTGGGCCATGATGGGAGCTCAAGCCACAGAACAAGGAGATTGTGCAAAGTTCAAGTTGAAGATTCCTCATAGCTGCAAGAGGAACCCTCAAGTGGTTGACTTGCTACCTGGAGCTCCTTTTAACACGCAGTTCACAAACTGCTGCAAGGGTGGTGTGCTTACATCTTGGGGGCAGAACCCTTCAGGTGCAGTCTCAGCATTTCAGATAGGTGTTGGCCTCTCTGGCACCTCTAACAAGACAGTCAAATTGCCCAAAAACTTCAAATTGCTAGGACCAGGACCAGGATACTCATGTGGCCCAGCCAAGATTGTTCCATCCACTGCCATCCTCACAGAAGATCGTAGGCGAAAAATGCAAGCACTGATGTCCTGGAATGTGACATGCACGTACTCACAGTTTCTTGCCTCCAAGAATCCAAGCTGTTGTGTTTCTTTGTCATCTTTCTACAGTGACAAAGTCACAGGTTGCCCACCTTGTGCTTGTGGTTGTCAAAATAACGATACTTGTGTCACGAAAGATTCAAAGATCCTGCAACAGAATGTCACGTCACCTCACCAAAAATCAGACATCACACTCACACCAAAACCATTATTACAATGCACACACCACCTGTGTCATGTCAGGGTGCACTGGCATTTGAAAGACAACTATAAGGACTATTGGCGTGTCAAGATTGCCATCATCAACTTCAACTATCGGTTGAATTTCACCGATTGGTCTCTTGTTGTGCAGCACCCTAATCTCAATAATGTCACCCAAGTCTACAGCTTTGAATACATGCCACTTCTTCCCTATGAATCCACAAATGACACAGGCATGTTCTATGGTTTGAAATATTACAATGATCTGTTGATGGAAGCTGGGCCTAAAGGGAATGTGCAGTCTGAGGTGCTCATGAAGAAGGACAAGAACACATTTACTCTCAAGCAGGGATGGGCATTTCCTAGGAGGGTCTACTTCAATGGTGATGAATGTATGCTGCCACCTCCTGATTCATATCCTATGCTGCCAAACTCTGCCCATAAACTACCAACAACTATTACATTGATGGCAGCCTATGTGGTTTTTACATTATTCTTTCATTTGGTTGTAACACTTTTTTGA
Predicted protein sequences of Glyma.04g160000
>Glyma.04g160000.1.p sequence-type=predicted peptide transcript=Glyma.04g160000.1 locus=Glyma.04g160000 ID=Glyma.04g160000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEFVNGKQQPKSTFTCLKLVALIALYLVLISPAESFDPLDPTGNVTIRWDIMSWTSDGYLATVTLFNFQLYRNIMNPGWTLGWTWAKKEIIWAMMGAQATEQGDCAKFKLKIPHSCKRNPQVVDLLPGAPFNTQFTNCCKGGVLTSWGQNPSGAVSAFQIGVGLSGTSNKTVKLPKNFKLLGPGPGYSCGPAKIVPSTAILTEDRRRKMQALMSWNVTCTYSQFLASKNPSCCVSLSSFYSDKVTGCPPCACGCQNNDTCVTKDSKILQQNVTSPHQKSDITLTPKPLLQCTHHLCHVRVHWHLKDNYKDYWRVKIAIINFNYRLNFTDWSLVVQHPNLNNVTQVYSFEYMPLLPYESTNDTGMFYGLKYYNDLLMEAGPKGNVQSEVLMKKDKNTFTLKQGWAFPRRVYFNGDECMLPPPDSYPMLPNSAHKLPTTITLMAAYVVFTLFFHLVVTLF*






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